Wall clock time and date at job start Sun Mar 29 2020 23:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38317 * 120.74652 * 2 1 4 4 C 1.39156 * 119.09480 * 180.25385 * 3 2 1 5 5 S 1.76193 * 119.71185 * 179.74905 * 4 3 2 6 6 C 1.81397 * 103.00251 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47247 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99958 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99974 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99656 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00036 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47414 * 90.00230 * 11 9 7 13 13 H 1.48508 * 109.47351 * 210.00396 * 11 9 7 14 14 H 1.48501 * 109.47147 * 330.00204 * 11 9 7 15 15 N 1.32494 * 120.57791 * 359.77054 * 4 3 2 16 16 C 1.31934 * 121.61611 * 359.97438 * 15 4 3 17 17 C 1.38068 * 120.85809 * 359.97438 * 16 15 4 18 18 N 1.48012 * 120.33023 * 180.02562 * 17 16 15 19 19 O 1.21796 * 120.00174 * 143.32016 * 18 17 16 20 20 O 1.21796 * 119.99387 * 323.04717 * 18 17 16 21 21 H 1.09001 * 109.47314 * 264.61355 * 1 2 3 22 22 H 1.09003 * 109.47187 * 24.61082 * 1 2 3 23 23 H 1.09003 * 109.47457 * 144.61336 * 1 2 3 24 24 H 1.08002 * 120.45211 * 0.02562 * 3 2 1 25 25 H 1.08992 * 109.47074 * 300.00075 * 6 5 4 26 26 H 1.09005 * 109.46751 * 60.00153 * 6 5 4 27 27 H 0.97007 * 119.99393 * 179.97438 * 10 9 7 28 28 H 1.07999 * 119.56921 * 179.97438 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1887 0.0000 4 6 3.6051 1.1486 -0.0054 5 16 4.5221 2.6531 -0.0122 6 6 6.2437 2.0817 -0.0185 7 6 7.1680 3.2719 -0.0254 8 1 6.7605 4.2721 -0.0255 9 6 8.5339 3.0840 -0.0316 10 7 9.3405 4.1228 -0.0371 11 14 9.2387 1.3541 -0.0322 12 1 9.4189 0.8935 -1.4323 13 1 10.5517 1.3542 0.6617 14 1 8.3059 0.4393 0.6737 15 7 4.2459 -0.0110 -0.0059 16 6 3.5971 -1.1598 -0.0008 17 6 2.2169 -1.1935 0.0057 18 7 1.5009 -2.4889 0.0119 19 8 0.4689 -2.6114 0.6471 20 8 1.9412 -3.4310 -0.6223 21 1 -0.3634 -0.0965 1.0231 22 1 -0.3634 0.9343 -0.4280 23 1 -0.3634 -0.8378 -0.5951 24 1 1.6938 2.1352 0.0004 25 1 6.4305 1.4813 0.8717 26 1 6.4228 1.4779 -0.9082 27 1 10.3015 3.9905 -0.0410 28 1 4.1529 -2.0858 -0.0019 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413467761.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:24 Heat of formation + Delta-G solvation = 20.698281 kcal Electronic energy + Delta-G solvation = -15671.565863 eV Core-core repulsion = 12816.958118 eV Total energy + Delta-G solvation = -2854.607745 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.29315 -40.26378 -36.63262 -34.48240 -33.25425 -32.16531 -29.65239 -28.63771 -26.63799 -23.53722 -22.90201 -22.47677 -19.28145 -18.84653 -17.90753 -17.74923 -16.92445 -16.49255 -15.10175 -14.82576 -14.63815 -14.23142 -13.51089 -13.40168 -13.23632 -12.87226 -12.72662 -12.42213 -11.62962 -11.31544 -11.12874 -11.02293 -10.95174 -10.45692 -10.38982 -10.06215 -9.98570 -9.89860 -9.54213 -8.88682 -7.44844 -6.36940 -4.43431 -0.19328 0.74881 1.02696 1.28899 1.70123 2.89497 3.13665 3.14357 3.23040 3.25318 4.02490 4.07509 4.17538 4.41421 4.43388 4.88848 4.95467 5.17115 5.22827 5.25678 5.48576 5.65285 5.82947 6.32607 6.44101 6.47549 7.16166 7.31947 7.59535 8.04826 8.59122 9.17385 10.74052 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.035327 B = 0.005222 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.398951 B = 5360.587470 C = 6091.711108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 C -0.166 4.166 4 C 0.158 3.842 5 S -0.019 6.019 6 C 0.028 3.972 7 C -0.532 4.532 8 H 0.085 0.915 9 C 0.087 3.913 10 N -0.884 5.884 11 Si 0.877 3.123 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.261 1.261 15 N -0.482 5.482 16 C 0.199 3.801 17 C -0.133 4.133 18 N 0.040 4.960 19 O -0.160 6.160 20 O -0.165 6.165 21 H 0.098 0.902 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.159 0.841 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.271 0.729 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.953 -7.865 0.197 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.025 3.975 3 C -0.194 4.194 4 C -0.089 4.089 5 S 0.232 5.768 6 C -0.120 4.120 7 C -0.571 4.571 8 H 0.103 0.897 9 C -0.119 4.119 10 N -0.520 5.520 11 Si 0.702 3.298 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.185 1.185 15 N -0.197 5.197 16 C 0.034 3.966 17 C -0.224 4.224 18 N 0.559 4.441 19 O -0.376 6.376 20 O -0.380 6.380 21 H 0.117 0.883 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.177 0.823 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.716 -5.823 0.188 14.902 hybrid contribution -0.005 -2.492 -0.028 2.492 sum -13.721 -8.314 0.160 16.044 Atomic orbital electron populations 1.21029 0.88081 1.04095 1.04764 1.19988 0.97834 0.90005 0.89721 1.21622 0.92705 0.98476 1.06580 1.24418 0.94859 0.98769 0.90819 1.85841 1.06274 1.00890 1.83793 1.21800 0.87671 1.00979 1.01551 1.20384 0.89980 0.91994 1.54783 0.89721 1.24791 0.96237 0.97374 0.93490 1.69850 1.04001 1.29951 1.48224 0.86810 0.79151 0.84577 0.79220 1.19628 1.20622 1.18494 1.68718 1.37408 0.96665 1.16892 1.22712 0.88215 0.98088 0.87619 1.21839 0.94003 0.83644 1.22947 1.43367 1.00252 1.02320 0.98161 1.94505 1.12385 1.89621 1.41130 1.94549 1.70367 1.31673 1.41408 0.88314 0.89793 0.90482 0.82318 0.92850 0.93290 0.91872 0.80749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 8.74 36.00 0.31 -0.78 15 2 C 0.04 0.42 5.90 -104.36 -0.62 -0.19 15 3 C -0.17 -2.10 9.52 -39.21 -0.37 -2.47 15 4 C 0.16 2.54 7.00 -16.92 -0.12 2.42 15 5 S -0.02 -0.34 21.83 -107.50 -2.35 -2.69 15 6 C 0.03 0.63 4.03 36.01 0.14 0.78 15 7 C -0.53 -14.15 9.68 -34.44 -0.33 -14.49 15 8 H 0.08 2.42 7.96 -52.49 -0.42 2.00 15 9 C 0.09 2.38 5.47 -17.82 -0.10 2.28 15 10 N -0.88 -25.48 13.96 55.43 0.77 -24.71 15 11 Si 0.88 20.27 27.47 -169.99 -4.67 15.60 15 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 14 H -0.26 -5.85 6.54 56.52 0.37 -5.48 15 15 N -0.48 -8.13 9.43 -12.11 -0.11 -8.24 15 16 C 0.20 2.86 10.81 -17.57 -0.19 2.67 15 17 C -0.13 -1.81 6.51 -79.78 -0.52 -2.33 15 18 N 0.04 0.57 4.18 34.05 0.14 0.71 15 19 O -0.16 -2.23 16.91 -29.46 -0.50 -2.73 15 20 O -0.16 -2.45 18.95 -29.46 -0.56 -3.00 15 21 H 0.10 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.08 0.56 8.07 -51.93 -0.42 0.14 15 23 H 0.08 0.73 7.03 -51.93 -0.36 0.37 15 24 H 0.16 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.05 1.22 7.20 -51.93 -0.37 0.85 15 26 H 0.05 1.11 7.57 -51.92 -0.39 0.71 15 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 28 H 0.18 2.13 8.00 -52.49 -0.42 1.71 15 LS Contribution 271.47 15.07 4.09 4.09 Total: -1.00 -28.75 271.47 -7.37 -36.12 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -2.40 Total: -3.04 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.79 Total: -12.11 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.80 Total: -32.24 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -1.06 Total: -5.74 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.35 Total: -2.69 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.75 -7.37 -36.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413467761.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.820 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds