Wall clock time and date at job start Sun Mar 29 2020 23:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46730 * 2 1 4 4 C 1.50696 * 109.47129 * 119.99560 * 2 1 3 5 5 H 1.08010 * 119.99679 * 120.00333 * 4 2 1 6 6 C 1.37877 * 120.00432 * 300.00584 * 4 2 1 7 7 N 1.31516 * 120.00082 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99882 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46929 * 90.00151 * 8 6 4 10 10 H 1.48500 * 109.47334 * 210.00122 * 8 6 4 11 11 H 1.48503 * 109.47230 * 330.00195 * 8 6 4 12 12 N 1.46893 * 109.47291 * 240.00411 * 2 1 3 13 13 C 1.46907 * 111.00057 * 183.95276 * 12 2 1 14 14 C 1.46902 * 111.00580 * 59.99625 * 12 2 1 15 15 C 1.52994 * 109.47188 * 198.87533 * 14 12 2 16 16 H 1.08999 * 109.47470 * 305.31527 * 15 14 12 17 17 C 1.52999 * 109.47188 * 185.31685 * 15 14 12 18 18 C 1.52997 * 109.47529 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47139 * 59.99773 * 18 17 15 20 20 C 1.53000 * 109.47382 * 300.00240 * 19 18 17 21 21 C 1.52998 * 109.46835 * 299.99866 * 20 19 18 22 22 C 1.52995 * 109.47013 * 179.97438 * 20 19 18 23 23 C 1.52994 * 109.46838 * 59.99887 * 20 19 18 24 24 H 1.09001 * 109.47569 * 299.99620 * 1 2 3 25 25 H 1.09002 * 109.47333 * 60.00305 * 1 2 3 26 26 H 1.09002 * 109.46730 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99854 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.46657 * 302.52011 * 13 12 2 29 29 H 1.09002 * 109.47077 * 62.52284 * 13 12 2 30 30 H 1.09003 * 109.47224 * 182.51857 * 13 12 2 31 31 H 1.09000 * 109.46709 * 78.87333 * 14 12 2 32 32 H 1.09001 * 109.46671 * 318.87501 * 14 12 2 33 33 H 1.09004 * 109.47226 * 300.00189 * 17 15 14 34 34 H 1.09005 * 109.47297 * 59.99745 * 17 15 14 35 35 H 1.08999 * 109.47216 * 299.99895 * 18 17 15 36 36 H 1.09004 * 109.47212 * 180.02562 * 18 17 15 37 37 H 1.09006 * 109.47222 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47261 * 60.00668 * 19 18 17 39 39 H 1.09004 * 109.46802 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47684 * 299.99679 * 21 20 19 41 41 H 1.09004 * 109.47158 * 60.00223 * 21 20 19 42 42 H 1.08997 * 109.47648 * 299.99901 * 22 20 19 43 43 H 1.09003 * 109.47488 * 60.00589 * 22 20 19 44 44 H 1.09004 * 109.46925 * 179.97438 * 22 20 19 45 45 H 1.09004 * 109.47362 * 180.02562 * 23 20 19 46 46 H 1.08999 * 109.47470 * 60.00295 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9954 3.9070 11 1 0.8489 2.1773 1.4923 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 6 1.6596 -0.9913 -3.6032 16 1 2.6812 -1.3647 -3.6729 17 6 1.2953 -0.2583 -4.8958 18 6 1.4056 -1.2233 -6.0779 19 6 0.4463 -2.3968 -5.8694 20 6 0.8105 -3.1299 -4.5768 21 6 2.2444 -3.6546 -4.6748 22 6 -0.1492 -4.3030 -4.3681 23 6 0.7002 -2.1648 -3.3948 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9031 -0.5279 4.4376 28 1 3.9181 0.2033 -1.1139 29 1 3.8006 -1.3911 -0.3311 30 1 3.8240 -1.2711 -2.1069 31 1 2.1602 0.8553 -2.6131 32 1 0.5086 0.2737 -2.2933 33 1 0.2736 0.1152 -4.8262 34 1 1.9785 0.5781 -5.0442 35 1 2.4271 -1.5971 -6.1477 36 1 1.1465 -0.7009 -6.9989 37 1 0.5252 -3.0846 -6.7114 38 1 -0.5753 -2.0231 -5.7997 39 1 2.5041 -4.1764 -3.7537 40 1 2.3230 -4.3421 -5.5169 41 1 2.9279 -2.8185 -4.8233 42 1 -1.1705 -3.9289 -4.2981 43 1 -0.0710 -4.9908 -5.2101 44 1 0.1106 -4.8255 -3.4474 45 1 0.9601 -2.6869 -2.4739 46 1 -0.3213 -1.7910 -3.3250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538738907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:29 Heat of formation + Delta-G solvation = -19.572130 kcal Electronic energy + Delta-G solvation = -20425.684481 eV Core-core repulsion = 17735.335899 eV Total energy + Delta-G solvation = -2690.348583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.62192 -37.04788 -33.59933 -32.50712 -31.10304 -29.81509 -27.24699 -26.50394 -26.21177 -24.46835 -23.59767 -21.67374 -20.13197 -19.16588 -18.25165 -16.73529 -15.51697 -14.92923 -14.76223 -14.53610 -14.28803 -13.83692 -13.72370 -13.18434 -12.87205 -12.76949 -12.44461 -12.41466 -12.04770 -11.84286 -11.72190 -11.59239 -11.34089 -11.29109 -10.91998 -10.83679 -10.78304 -10.62919 -10.45711 -10.34524 -10.10606 -9.84472 -9.74216 -9.63154 -9.41740 -8.95282 -8.54021 -7.25349 -6.04709 -4.02692 3.27666 3.37539 3.39610 4.41574 4.71142 4.76513 4.79534 4.97458 5.24725 5.28803 5.30882 5.45099 5.48374 5.54677 5.70229 5.75598 5.77872 5.83016 5.90862 5.97112 6.02713 6.04465 6.08351 6.14090 6.18391 6.20775 6.25487 6.33699 6.37068 6.40782 6.44024 6.50015 6.54666 6.62370 6.63779 6.77303 6.88363 6.90697 6.95337 7.32944 7.63781 8.01836 8.16647 8.69999 9.02307 9.57902 11.08128 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.005476 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.971707 B = 5112.003561 C = 5251.585048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.181 3.819 3 H -0.006 1.006 4 C -0.503 4.503 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.523 5.523 13 C 0.039 3.961 14 C 0.049 3.951 15 C -0.080 4.080 16 H 0.070 0.930 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.106 4.106 20 C -0.067 4.067 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.092 4.092 24 H 0.039 0.961 25 H 0.029 0.971 26 H 0.060 0.940 27 H 0.263 0.737 28 H 0.010 0.990 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.020 0.980 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 -1.739 -18.334 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 H 0.012 0.988 4 C -0.541 4.541 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.195 1.195 12 N -0.247 5.247 13 C -0.109 4.109 14 C -0.080 4.080 15 C -0.098 4.098 16 H 0.089 0.911 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.144 4.144 20 C -0.067 4.067 21 C -0.198 4.198 22 C -0.197 4.197 23 C -0.129 4.129 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.712 -2.217 -18.112 18.448 hybrid contribution -0.334 1.709 0.271 1.762 sum -3.046 -0.508 -17.841 18.106 Atomic orbital electron populations 1.22219 0.98692 1.01283 0.98035 1.19671 0.91336 0.92516 0.89091 0.98812 1.21005 1.31708 1.13466 0.87923 0.89931 1.24925 0.95864 0.96572 0.95861 1.69884 1.45890 1.40306 0.97838 0.86888 0.80798 0.83922 0.76722 1.20584 1.22571 1.19541 1.61889 1.09654 1.51907 1.01240 1.22232 0.88209 0.99315 1.01158 1.22255 1.00458 0.94339 0.90927 1.21157 1.00033 0.95684 0.92973 0.91136 1.21575 1.01295 0.97666 0.94721 1.21542 0.99942 0.96445 0.97618 1.21581 0.99081 0.96790 0.96917 1.20566 0.95325 0.95235 0.95533 1.21936 0.96097 1.00596 1.01218 1.21847 0.98974 0.97573 1.01330 1.21503 0.98643 0.95235 0.97551 0.94217 0.95195 0.92064 0.92696 0.97095 0.90323 0.93642 0.96181 0.91082 0.92320 0.92628 0.91916 0.92731 0.92721 0.92330 0.92535 0.93606 0.92238 0.92976 0.93346 0.92458 0.90093 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.51 37.16 0.32 -2.90 16 2 C 0.18 4.33 1.65 -68.87 -0.11 4.22 16 3 H -0.01 -0.14 7.20 -51.93 -0.37 -0.51 16 4 C -0.50 -14.07 8.53 -34.44 -0.29 -14.36 16 5 H 0.08 2.50 6.64 -52.48 -0.35 2.15 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 8 Si 0.89 22.20 24.37 -169.99 -4.14 18.06 16 9 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 10 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.56 6.53 56.52 0.37 -6.19 16 12 N -0.52 -10.70 4.02 -236.29 -0.95 -11.66 16 13 C 0.04 0.76 9.04 60.07 0.54 1.31 16 14 C 0.05 0.83 4.24 -3.83 -0.02 0.81 16 15 C -0.08 -1.12 1.96 -90.62 -0.18 -1.29 16 16 H 0.07 1.02 4.93 -51.93 -0.26 0.76 16 17 C -0.11 -1.36 5.20 -26.73 -0.14 -1.50 16 18 C -0.12 -1.22 5.65 -26.73 -0.15 -1.37 16 19 C -0.11 -1.11 4.73 -26.73 -0.13 -1.24 16 20 C -0.07 -0.78 0.77 -154.52 -0.12 -0.89 16 21 C -0.14 -1.61 7.78 37.16 0.29 -1.33 16 22 C -0.14 -1.55 8.47 37.16 0.31 -1.23 16 23 C -0.09 -1.29 3.90 -26.73 -0.10 -1.39 16 24 H 0.04 0.92 3.27 -51.93 -0.17 0.75 16 25 H 0.03 0.57 6.05 -51.93 -0.31 0.26 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 1.70 6.33 -51.93 -0.33 1.37 16 30 H 0.04 0.76 6.58 -51.93 -0.34 0.41 16 31 H 0.02 0.34 8.01 -51.93 -0.42 -0.07 16 32 H 0.07 1.23 5.55 -51.93 -0.29 0.94 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.35 7.76 -51.93 -0.40 0.94 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -28.95 326.47 -7.78 -36.73 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -8.50 Total: -2.01 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 0.12 Total: -19.27 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.18 Total: -38.43 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.95 -7.78 -36.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538738907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.157 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds