Wall clock time and date at job start Sun Mar 29 2020 23:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46730 * 2 1 4 4 C 1.50696 * 109.47129 * 119.99560 * 2 1 3 5 5 H 1.08010 * 119.99679 * 120.00333 * 4 2 1 6 6 C 1.37877 * 120.00432 * 300.00584 * 4 2 1 7 7 N 1.31516 * 120.00082 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99882 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46929 * 90.00151 * 8 6 4 10 10 H 1.48500 * 109.47334 * 210.00122 * 8 6 4 11 11 H 1.48503 * 109.47230 * 330.00195 * 8 6 4 12 12 N 1.46893 * 109.47291 * 240.00411 * 2 1 3 13 13 C 1.46907 * 111.00057 * 183.95276 * 12 2 1 14 14 C 1.46902 * 111.00580 * 59.99625 * 12 2 1 15 15 C 1.52994 * 109.47188 * 198.87533 * 14 12 2 16 16 H 1.08999 * 109.47470 * 305.31527 * 15 14 12 17 17 C 1.52999 * 109.47188 * 185.31685 * 15 14 12 18 18 C 1.52997 * 109.47529 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47139 * 59.99773 * 18 17 15 20 20 C 1.53000 * 109.47382 * 300.00240 * 19 18 17 21 21 C 1.52998 * 109.46835 * 299.99866 * 20 19 18 22 22 C 1.52995 * 109.47013 * 179.97438 * 20 19 18 23 23 C 1.52994 * 109.46838 * 59.99887 * 20 19 18 24 24 H 1.09001 * 109.47569 * 299.99620 * 1 2 3 25 25 H 1.09002 * 109.47333 * 60.00305 * 1 2 3 26 26 H 1.09002 * 109.46730 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99854 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.46657 * 302.52011 * 13 12 2 29 29 H 1.09002 * 109.47077 * 62.52284 * 13 12 2 30 30 H 1.09003 * 109.47224 * 182.51857 * 13 12 2 31 31 H 1.09000 * 109.46709 * 78.87333 * 14 12 2 32 32 H 1.09001 * 109.46671 * 318.87501 * 14 12 2 33 33 H 1.09004 * 109.47226 * 300.00189 * 17 15 14 34 34 H 1.09005 * 109.47297 * 59.99745 * 17 15 14 35 35 H 1.08999 * 109.47216 * 299.99895 * 18 17 15 36 36 H 1.09004 * 109.47212 * 180.02562 * 18 17 15 37 37 H 1.09006 * 109.47222 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47261 * 60.00668 * 19 18 17 39 39 H 1.09004 * 109.46802 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47684 * 299.99679 * 21 20 19 41 41 H 1.09004 * 109.47158 * 60.00223 * 21 20 19 42 42 H 1.08997 * 109.47648 * 299.99901 * 22 20 19 43 43 H 1.09003 * 109.47488 * 60.00589 * 22 20 19 44 44 H 1.09004 * 109.46925 * 179.97438 * 22 20 19 45 45 H 1.09004 * 109.47362 * 180.02562 * 23 20 19 46 46 H 1.08999 * 109.47470 * 60.00295 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9954 3.9070 11 1 0.8489 2.1773 1.4923 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 6 1.6596 -0.9913 -3.6032 16 1 2.6812 -1.3647 -3.6729 17 6 1.2953 -0.2583 -4.8958 18 6 1.4056 -1.2233 -6.0779 19 6 0.4463 -2.3968 -5.8694 20 6 0.8105 -3.1299 -4.5768 21 6 2.2444 -3.6546 -4.6748 22 6 -0.1492 -4.3030 -4.3681 23 6 0.7002 -2.1648 -3.3948 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9031 -0.5279 4.4376 28 1 3.9181 0.2033 -1.1139 29 1 3.8006 -1.3911 -0.3311 30 1 3.8240 -1.2711 -2.1069 31 1 2.1602 0.8553 -2.6131 32 1 0.5086 0.2737 -2.2933 33 1 0.2736 0.1152 -4.8262 34 1 1.9785 0.5781 -5.0442 35 1 2.4271 -1.5971 -6.1477 36 1 1.1465 -0.7009 -6.9989 37 1 0.5252 -3.0846 -6.7114 38 1 -0.5753 -2.0231 -5.7997 39 1 2.5041 -4.1764 -3.7537 40 1 2.3230 -4.3421 -5.5169 41 1 2.9279 -2.8185 -4.8233 42 1 -1.1705 -3.9289 -4.2981 43 1 -0.0710 -4.9908 -5.2101 44 1 0.1106 -4.8255 -3.4474 45 1 0.9601 -2.6869 -2.4739 46 1 -0.3213 -1.7910 -3.3250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000538738907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:28 Heat of formation + Delta-G solvation = -36.300266 kcal Electronic energy + Delta-G solvation = -20426.409868 eV Core-core repulsion = 17735.335899 eV Total energy + Delta-G solvation = -2691.073969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68333 -38.63159 -35.12348 -34.04935 -32.50973 -31.42015 -28.26082 -28.02941 -27.16579 -26.31533 -25.10373 -22.76865 -21.44411 -20.77180 -19.23403 -18.81282 -17.18486 -16.32063 -16.03236 -15.74760 -15.48948 -15.34574 -15.01371 -14.69770 -14.32756 -14.25954 -13.85353 -13.67738 -13.55776 -13.02202 -12.91987 -12.65807 -12.64089 -12.53305 -12.45299 -12.35501 -12.18880 -12.05400 -11.77810 -11.70539 -11.50091 -11.42875 -11.04433 -10.91658 -10.72716 -10.69794 -10.61124 -8.92257 -8.28209 -6.30763 1.28374 1.33178 1.43153 2.30884 3.05279 3.25517 3.77015 3.87651 3.97316 4.21250 4.30441 4.39026 4.46443 4.52724 4.53650 4.58233 4.63099 4.65582 4.69901 4.81462 4.85885 4.88179 4.89299 4.92313 4.95443 5.02483 5.08460 5.11817 5.17381 5.21929 5.26063 5.28289 5.29109 5.40978 5.44604 5.46772 5.57099 5.60622 5.65943 5.74008 5.80189 6.06793 6.42169 6.74267 6.77737 7.34132 8.88118 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.005476 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.971707 B = 5112.003561 C = 5251.585048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.184 3.816 3 H -0.016 1.016 4 C -0.504 4.504 5 H 0.043 0.957 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.298 1.298 11 H -0.254 1.254 12 N -0.532 5.532 13 C 0.045 3.955 14 C 0.049 3.951 15 C -0.072 4.072 16 H 0.067 0.933 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.103 4.103 20 C -0.065 4.065 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.088 4.088 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.265 0.735 28 H 0.009 0.991 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.047 0.953 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -0.603 -21.223 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.076 3.924 3 H 0.002 0.998 4 C -0.543 4.543 5 H 0.061 0.939 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.775 3.225 9 H -0.191 1.191 10 H -0.226 1.226 11 H -0.179 1.179 12 N -0.255 5.255 13 C -0.103 4.103 14 C -0.079 4.079 15 C -0.091 4.091 16 H 0.085 0.915 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.140 4.140 20 C -0.065 4.065 21 C -0.197 4.197 22 C -0.196 4.196 23 C -0.126 4.126 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.937 -1.084 -21.033 21.426 hybrid contribution 0.124 1.265 1.144 1.710 sum -3.813 0.181 -19.889 20.252 Atomic orbital electron populations 1.22107 0.96954 1.01331 0.99291 1.19512 0.92636 0.91393 0.88898 0.99842 1.21247 1.30711 1.12290 0.90007 0.93893 1.25753 0.97431 0.99853 0.95442 1.70034 1.47893 1.42469 0.98494 0.85878 0.79435 0.80174 0.77028 1.19092 1.22604 1.17879 1.61840 1.10021 1.52154 1.01531 1.22146 0.87969 0.98878 1.01302 1.22371 1.00236 0.95079 0.90178 1.21094 0.99868 0.95144 0.92979 0.91509 1.21539 1.01544 0.97951 0.93790 1.21530 1.00076 0.96077 0.97526 1.21558 0.99165 0.96987 0.96305 1.20546 0.95647 0.94977 0.95303 1.21917 0.95906 1.00781 1.01053 1.21837 0.98877 0.97602 1.01328 1.21422 0.98268 0.95569 0.97293 0.94891 0.91864 0.92702 0.92595 0.97255 0.93493 0.90641 0.95764 0.90973 0.92051 0.92002 0.91716 0.90958 0.91210 0.92175 0.94196 0.91983 0.92224 0.92802 0.91733 0.93873 0.93438 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 8.51 71.98 0.61 -5.37 16 2 C 0.18 8.76 1.65 44.17 0.07 8.83 16 3 H -0.02 -0.78 7.20 -2.39 -0.02 -0.80 16 4 C -0.50 -29.10 8.53 25.60 0.22 -28.88 16 5 H 0.04 2.76 6.64 -2.91 -0.02 2.74 16 6 C 0.01 0.72 5.45 84.65 0.46 1.18 16 7 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 8 Si 0.95 45.69 24.37 68.60 1.67 47.36 16 9 H -0.26 -12.12 6.87 99.48 0.68 -11.44 16 10 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 11 H -0.25 -11.54 6.53 99.48 0.65 -10.89 16 12 N -0.53 -21.71 4.02 -901.48 -3.63 -25.34 16 13 C 0.05 1.79 9.04 127.69 1.15 2.95 16 14 C 0.05 1.59 4.24 86.30 0.37 1.96 16 15 C -0.07 -1.88 1.96 -10.80 -0.02 -1.91 16 16 H 0.07 1.81 4.93 -2.39 -0.01 1.80 16 17 C -0.11 -2.26 5.20 30.59 0.16 -2.10 16 18 C -0.11 -1.96 5.65 30.59 0.17 -1.78 16 19 C -0.10 -1.80 4.73 30.59 0.14 -1.66 16 20 C -0.06 -1.39 0.77 -52.19 -0.04 -1.43 16 21 C -0.14 -2.95 7.78 71.98 0.56 -2.39 16 22 C -0.14 -2.87 8.47 71.98 0.61 -2.26 16 23 C -0.09 -2.38 3.90 30.59 0.12 -2.26 16 24 H 0.03 1.45 3.27 -2.39 -0.01 1.44 16 25 H 0.06 2.27 6.05 -2.39 -0.01 2.25 16 26 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.05 2.13 6.33 -2.39 -0.02 2.11 16 30 H 0.08 2.48 6.58 -2.39 -0.02 2.46 16 31 H 0.02 0.77 8.01 -2.39 -0.02 0.75 16 32 H 0.07 2.31 5.55 -2.39 -0.01 2.30 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.06 1.10 6.43 -2.39 -0.02 1.09 16 36 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.25 4.81 -2.38 -0.01 1.24 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.05 1.59 7.76 -2.39 -0.02 1.58 16 46 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -63.77 326.47 3.77 -60.00 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.84 Total: 12.67 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.59 Total: -35.11 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -3.33 Total: -84.91 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.36 kcal Total: -63.77 3.77 -60.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538738907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.698 kcal (2) G-P(sol) polarization free energy of solvation -63.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds