Wall clock time and date at job start Sun Mar 29 2020 23:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46492 * 109.47043 * 2 1 4 4 C 1.36932 * 120.00479 * 271.87175 * 3 2 1 5 5 H 1.08001 * 120.00471 * 176.76339 * 4 3 2 6 6 C 1.38817 * 119.99731 * 356.76204 * 4 3 2 7 7 N 1.31610 * 120.00130 * 32.89333 * 6 4 3 8 8 Si 1.86804 * 120.00030 * 212.89273 * 6 4 3 9 9 H 1.48496 * 109.47232 * 94.99705 * 8 6 4 10 10 H 1.48500 * 109.47096 * 214.99539 * 8 6 4 11 11 H 1.48507 * 109.46891 * 334.99710 * 8 6 4 12 12 C 1.46501 * 120.00028 * 91.87921 * 3 2 1 13 13 C 1.53002 * 109.46901 * 269.99823 * 12 3 2 14 14 H 1.09004 * 109.47260 * 54.99477 * 13 12 3 15 15 C 1.52996 * 109.47214 * 294.99940 * 13 12 3 16 16 C 1.52997 * 109.47186 * 174.99457 * 13 12 3 17 17 C 1.53008 * 109.46909 * 185.48307 * 16 13 12 18 18 C 1.52991 * 109.46887 * 66.64004 * 17 16 13 19 19 C 1.53008 * 109.47254 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.46598 * 299.99810 * 19 18 17 21 21 C 1.53002 * 109.47372 * 59.99671 * 20 19 18 22 22 C 1.52997 * 109.47212 * 300.00184 * 21 20 19 23 23 H 1.09000 * 109.47114 * 299.99273 * 1 2 3 24 24 H 1.08995 * 109.47315 * 59.99990 * 1 2 3 25 25 H 1.09008 * 109.47428 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46803 * 240.00334 * 2 1 3 27 27 H 1.08997 * 109.47496 * 120.00764 * 2 1 3 28 28 H 0.97004 * 120.00481 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47689 * 149.99808 * 12 3 2 30 30 H 1.09003 * 109.46920 * 29.99355 * 12 3 2 31 31 H 1.09001 * 109.47368 * 184.61863 * 15 13 12 32 32 H 1.09005 * 109.46827 * 304.61789 * 15 13 12 33 33 H 1.09001 * 109.47090 * 64.61039 * 15 13 12 34 34 H 1.08997 * 109.47183 * 65.48915 * 16 13 12 35 35 H 1.09000 * 109.47653 * 305.48337 * 16 13 12 36 36 H 1.08994 * 109.47328 * 306.63474 * 17 16 13 37 37 H 1.08994 * 109.47570 * 59.99617 * 18 17 16 38 38 H 1.09003 * 109.46907 * 299.99366 * 18 17 16 39 39 H 1.08995 * 109.47509 * 180.02562 * 19 18 17 40 40 H 1.08994 * 109.47209 * 59.99318 * 19 18 17 41 41 H 1.08997 * 109.47174 * 180.02562 * 20 19 18 42 42 H 1.09003 * 109.47139 * 299.99663 * 20 19 18 43 43 H 1.09003 * 109.46995 * 59.99904 * 21 20 19 44 44 H 1.08996 * 109.47320 * 179.97438 * 21 20 19 45 45 H 1.09003 * 109.46912 * 299.99771 * 22 21 20 46 46 H 1.08993 * 109.47283 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3811 0.0000 4 6 2.2100 2.0397 -1.1852 5 1 2.5197 3.0743 -1.1842 6 6 2.0062 1.3773 -2.3880 7 7 1.0808 0.4458 -2.4778 8 14 3.0454 1.8082 -3.8793 9 1 4.1963 0.8738 -3.9673 10 1 2.2195 1.6933 -5.1081 11 1 3.5467 3.1999 -3.7479 12 6 2.3016 2.0579 1.2681 13 6 1.0410 2.7741 1.7567 14 1 0.2189 2.0610 1.8188 15 6 0.6753 3.8895 0.7755 16 6 1.2997 3.3756 3.1395 17 6 0.0017 3.9727 3.6869 18 6 -1.0028 2.8502 3.9546 19 6 -2.3011 3.4472 4.5015 20 6 -2.0099 4.1928 5.8055 21 6 -1.0053 5.3153 5.5378 22 6 0.2928 4.7183 4.9909 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.9386 -0.0173 -3.3182 29 1 3.0993 2.7861 1.1210 30 1 2.6128 1.3230 2.0105 31 1 -0.1734 4.4521 1.1646 32 1 1.5276 4.5576 0.6509 33 1 0.4114 3.4537 -0.1881 34 1 2.0543 4.1582 3.0598 35 1 1.6542 2.5964 3.8143 36 1 -0.4151 4.6669 2.9572 37 1 -0.5860 2.1560 4.6843 38 1 -1.2106 2.3193 3.0255 39 1 -3.0166 2.6475 4.6926 40 1 -2.7177 4.1411 3.7715 41 1 -2.9348 4.6177 6.1953 42 1 -1.5933 3.4988 6.5356 43 1 -1.4219 6.0093 4.8077 44 1 -0.7983 5.8467 6.4666 45 1 0.7094 4.0243 5.7210 46 1 1.0087 5.5179 4.8007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543632901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:07 Heat of formation + Delta-G solvation = -16.675655 kcal Electronic energy + Delta-G solvation = -20147.134629 eV Core-core repulsion = 17456.911647 eV Total energy + Delta-G solvation = -2690.222982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.92940 -36.67088 -34.27592 -31.37718 -30.70020 -30.24709 -28.71930 -26.17722 -25.23828 -23.12371 -22.57685 -21.41724 -20.18646 -19.57800 -18.89347 -16.58624 -15.43342 -14.97505 -14.55381 -14.25036 -13.98377 -13.81650 -13.50308 -13.29459 -12.85032 -12.55423 -12.11779 -12.01620 -11.77407 -11.57831 -11.45862 -11.22158 -11.15140 -11.03774 -10.77264 -10.74977 -10.51636 -10.44173 -10.34447 -10.13608 -9.90863 -9.83106 -9.73684 -9.50952 -9.38410 -9.13830 -8.09763 -6.83325 -5.74026 -2.89566 3.46266 3.55568 3.56581 4.59883 4.73129 4.79007 4.83878 5.21714 5.26563 5.35940 5.46131 5.52387 5.56993 5.59346 5.64193 5.69593 5.77459 5.94913 6.02719 6.04855 6.06413 6.16554 6.19517 6.24175 6.33783 6.36372 6.40383 6.46473 6.59906 6.65949 6.66897 6.71090 6.85181 6.91296 6.98267 7.08142 7.26035 7.33684 7.36274 7.80060 7.86886 8.20188 8.42194 9.33733 9.99970 10.45582 11.31872 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.035228 B = 0.004882 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.625113 B = 5734.169326 C = 6029.395624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.165 3.835 3 N -0.599 5.599 4 C -0.242 4.242 5 H 0.076 0.924 6 C 0.001 3.999 7 N -0.886 5.886 8 Si 0.875 3.125 9 H -0.291 1.291 10 H -0.296 1.296 11 H -0.282 1.282 12 C 0.158 3.842 13 C -0.115 4.115 14 H 0.068 0.932 15 C -0.134 4.134 16 C -0.108 4.108 17 C -0.087 4.087 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.114 4.114 23 H 0.012 0.988 24 H 0.090 0.910 25 H 0.015 0.985 26 H 0.082 0.918 27 H 0.003 0.997 28 H 0.250 0.750 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 5.947 14.511 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.040 3.960 3 N -0.321 5.321 4 C -0.370 4.370 5 H 0.094 0.906 6 C -0.196 4.196 7 N -0.532 5.532 8 Si 0.705 3.295 9 H -0.219 1.219 10 H -0.224 1.224 11 H -0.208 1.208 12 C 0.031 3.969 13 C -0.136 4.136 14 H 0.086 0.914 15 C -0.191 4.191 16 C -0.146 4.146 17 C -0.105 4.105 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.151 4.151 23 H 0.031 0.969 24 H 0.108 0.892 25 H 0.034 0.966 26 H 0.100 0.900 27 H 0.021 0.979 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.064 5.846 14.364 16.032 hybrid contribution 0.378 0.229 -0.824 0.935 sum -3.686 6.075 13.540 15.291 Atomic orbital electron populations 1.22370 0.99401 0.97867 1.01030 1.20872 0.92484 0.84792 0.97840 1.44265 1.76143 1.10756 1.00909 1.19203 1.38628 0.95881 0.83337 0.90621 1.24647 0.98927 0.99040 0.96976 1.70273 1.28888 1.29061 1.24988 0.86642 0.81831 0.77802 0.83264 1.21891 1.22370 1.20766 1.20813 0.94098 0.94379 0.87655 1.21958 1.01172 0.97793 0.92680 0.91354 1.21757 0.98994 0.97389 1.00974 1.21669 0.96216 0.99475 0.97276 1.21204 0.96140 0.96991 0.96178 1.21610 0.94772 0.97694 1.01085 1.21542 0.97789 0.99474 0.96930 1.21528 0.98620 0.97695 0.97720 1.21530 0.96077 0.97670 1.00375 1.21599 0.96745 0.99405 0.97396 0.96900 0.89181 0.96595 0.90021 0.97905 0.93987 0.94001 0.94849 0.94958 0.94327 0.90557 0.92709 0.92874 0.91030 0.92456 0.91364 0.92441 0.92198 0.92632 0.92291 0.92217 0.92599 0.92361 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.71 37.15 0.36 -3.07 16 2 C 0.17 4.01 5.71 -4.05 -0.02 3.98 16 3 N -0.60 -14.56 2.42 -173.24 -0.42 -14.98 16 4 C -0.24 -6.42 7.78 -15.06 -0.12 -6.54 16 5 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 6 C 0.00 0.03 4.88 -17.43 -0.09 -0.05 16 7 N -0.89 -24.72 8.58 55.49 0.48 -24.24 16 8 Si 0.87 21.52 29.66 -169.99 -5.04 16.47 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 C 0.16 3.21 5.21 -4.04 -0.02 3.19 16 13 C -0.12 -2.05 2.48 -90.62 -0.22 -2.27 16 14 H 0.07 1.32 4.49 -51.93 -0.23 1.09 16 15 C -0.13 -2.51 8.33 37.16 0.31 -2.20 16 16 C -0.11 -1.56 4.13 -26.73 -0.11 -1.67 16 17 C -0.09 -1.12 2.07 -90.62 -0.19 -1.30 16 18 C -0.11 -1.46 4.99 -26.73 -0.13 -1.59 16 19 C -0.12 -1.34 5.92 -26.72 -0.16 -1.49 16 20 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 21 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 22 C -0.11 -1.26 5.20 -26.73 -0.14 -1.40 16 23 H 0.01 0.27 6.24 -51.93 -0.32 -0.06 16 24 H 0.09 2.38 6.29 -51.93 -0.33 2.06 16 25 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.08 2.21 5.87 -51.93 -0.30 1.90 16 27 H 0.00 0.06 7.87 -51.93 -0.41 -0.35 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 30 H 0.03 0.64 7.88 -51.93 -0.41 0.23 16 31 H 0.03 0.54 6.26 -51.93 -0.32 0.21 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.71 6.66 -51.93 -0.35 1.37 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.99 6.21 -51.93 -0.32 0.67 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.99 6.51 -51.93 -0.34 0.66 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -26.75 334.58 -9.59 -36.34 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.80 Total: -1.53 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -0.85 Total: -17.10 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.06 Total: -39.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.04 Total: 16.47 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.75 -9.59 -36.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543632901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.661 kcal (2) G-P(sol) polarization free energy of solvation -26.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds