Wall clock time and date at job start Sun Mar 29 2020 23:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 N 1.46901 * 109.47143 * 294.99574 * 4 2 1 6 6 C 1.46848 * 111.00211 * 294.21601 * 5 4 2 7 7 C 1.53037 * 109.52194 * 174.16050 * 6 5 4 8 8 C 1.53113 * 109.28068 * 59.17736 * 7 6 5 9 9 C 1.53114 * 109.16102 * 302.34556 * 8 7 6 10 10 H 1.09006 * 109.50349 * 297.71393 * 9 8 7 11 11 C 1.50704 * 109.50574 * 177.59719 * 9 8 7 12 12 H 1.07999 * 119.99735 * 240.19722 * 11 9 8 13 13 C 1.37880 * 119.99941 * 60.19151 * 11 9 8 14 14 N 1.31517 * 119.99785 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00055 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47280 * 90.00063 * 15 13 11 17 17 H 1.48491 * 109.47398 * 210.00486 * 15 13 11 18 18 H 1.48505 * 109.47116 * 330.00408 * 15 13 11 19 19 C 1.46848 * 110.99986 * 170.00179 * 5 4 2 20 20 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 21 21 C 1.52997 * 109.47415 * 59.99873 * 20 2 1 22 22 C 1.53006 * 109.46711 * 180.02562 * 20 2 1 23 23 C 1.52996 * 109.46972 * 299.99733 * 20 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 28 28 H 1.09001 * 109.46952 * 174.99972 * 4 2 1 29 29 H 1.09000 * 109.45974 * 294.17102 * 6 5 4 30 30 H 1.09002 * 109.46166 * 54.14146 * 6 5 4 31 31 H 1.09000 * 109.50107 * 299.23175 * 7 6 5 32 32 H 1.09001 * 109.50288 * 179.12082 * 7 6 5 33 33 H 1.08999 * 109.52149 * 182.44059 * 8 7 6 34 34 H 1.08996 * 109.52259 * 62.24927 * 8 7 6 35 35 H 0.97001 * 119.99459 * 180.02562 * 14 13 11 36 36 H 1.08995 * 109.46424 * 305.85576 * 19 5 4 37 37 H 1.08992 * 109.46022 * 65.82649 * 19 5 4 38 38 H 1.09002 * 109.47045 * 59.99931 * 21 20 2 39 39 H 1.08998 * 109.47171 * 179.97438 * 21 20 2 40 40 H 1.09000 * 109.47140 * 300.00024 * 21 20 2 41 41 H 1.08996 * 109.47165 * 59.99875 * 22 20 2 42 42 H 1.09001 * 109.46726 * 179.97438 * 22 20 2 43 43 H 1.09002 * 109.46589 * 299.99365 * 22 20 2 44 44 H 1.09004 * 109.47552 * 60.00305 * 23 20 2 45 45 H 1.09001 * 109.46993 * 180.02562 * 23 20 2 46 46 H 1.09004 * 109.47298 * 300.00176 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0373 2.4456 6 6 2.3292 1.3394 2.4863 7 6 1.7932 2.1584 3.6627 8 6 2.0395 1.3929 4.9656 9 6 1.3640 0.0216 4.8782 10 1 0.2874 0.1526 4.7687 11 6 1.6511 -0.7617 6.1333 12 1 2.1728 -1.7055 6.0732 13 6 1.2480 -0.2735 7.3581 14 7 0.6124 0.8756 7.4310 15 14 1.6045 -1.2440 8.9138 16 1 2.9219 -0.8334 9.4624 17 1 0.5445 -0.9757 9.9185 18 1 1.6306 -2.6947 8.5971 19 6 1.9124 -0.7356 3.6667 20 6 2.0399 -0.7212 -1.2493 21 6 1.5299 0.0000 -2.4985 22 6 3.5700 -0.7218 -1.2490 23 6 1.5299 -2.1637 -1.2493 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 1.6054 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2055 29 1 3.4015 1.1869 2.6087 30 1 2.1425 1.8752 1.5556 31 1 0.7234 2.3231 3.5340 32 1 2.3076 3.1186 3.7020 33 1 1.6206 1.9527 5.8018 34 1 3.1114 1.2621 5.1142 35 1 0.3291 1.2193 8.2927 36 1 1.4230 -1.7067 3.5933 37 1 2.9866 -0.8783 3.7834 38 1 1.8932 1.0277 -2.4985 39 1 1.8936 -0.5136 -3.3885 40 1 0.4399 0.0000 -2.4985 41 1 3.9329 -1.2359 -0.3590 42 1 3.9332 -1.2360 -2.1388 43 1 3.9336 0.3058 -1.2488 44 1 0.4399 -2.1638 -1.2492 45 1 1.8936 -2.6776 -2.1391 46 1 1.8933 -2.6776 -0.3593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:36 Heat of formation + Delta-G solvation = -30.532051 kcal Electronic energy + Delta-G solvation = -20179.296983 eV Core-core repulsion = 17488.473142 eV Total energy + Delta-G solvation = -2690.823841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.24832 -37.38557 -33.69784 -31.89245 -30.35278 -29.64129 -27.81738 -27.32036 -25.24964 -24.90085 -22.87041 -21.63332 -20.73136 -18.53518 -17.91158 -16.40242 -15.58132 -14.91119 -14.68376 -14.33644 -14.13216 -13.81871 -13.71024 -13.12627 -12.88169 -12.71251 -12.38703 -12.08102 -11.94752 -11.92067 -11.76529 -11.61130 -11.48698 -11.07485 -10.92573 -10.88241 -10.69562 -10.65361 -10.27000 -10.22068 -10.15417 -9.89012 -9.77165 -9.40073 -8.93081 -8.65280 -8.26024 -7.52315 -5.93809 -3.99731 3.32804 3.39570 3.42663 4.40648 4.55589 4.81351 4.82476 4.95400 5.24156 5.36178 5.46662 5.52134 5.62572 5.64047 5.67619 5.74267 5.79589 5.87844 5.88792 5.94018 6.01785 6.04717 6.11219 6.14064 6.19126 6.20741 6.27142 6.38462 6.43793 6.48113 6.58280 6.60480 6.75367 6.78958 6.81626 7.03844 7.28085 7.46891 7.76118 7.80562 7.93084 8.14038 8.22440 8.53201 9.04497 9.64313 11.12159 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.036862 B = 0.004732 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.410166 B = 5916.076013 C = 6182.269193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 H 0.068 0.932 4 C 0.057 3.943 5 N -0.535 5.535 6 C 0.062 3.938 7 C -0.117 4.117 8 C -0.110 4.110 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.514 4.514 12 H 0.052 0.948 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.069 3.931 20 C -0.065 4.065 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.144 4.144 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.019 0.981 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.259 0.741 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.581 -1.039 -16.757 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 H 0.086 0.914 4 C -0.071 4.071 5 N -0.260 5.260 6 C -0.066 4.066 7 C -0.155 4.155 8 C -0.148 4.148 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.553 4.553 12 H 0.071 0.929 13 C -0.138 4.138 14 N -0.527 5.527 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.058 4.058 20 C -0.066 4.066 21 C -0.198 4.198 22 C -0.201 4.201 23 C -0.201 4.201 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.993 -0.841 -16.641 16.781 hybrid contribution 1.181 -0.647 0.955 1.650 sum 3.173 -1.487 -15.686 16.073 Atomic orbital electron populations 1.21805 0.94755 1.01607 1.01557 1.21160 0.96564 0.99042 0.92699 0.91396 1.22237 0.97252 0.97373 0.90246 1.61962 1.58053 1.03710 1.02231 1.22051 0.95008 0.91000 0.98527 1.21669 1.00591 0.97000 0.96222 1.21639 0.98593 0.98934 0.95627 1.18653 0.96247 0.91471 0.89976 0.94819 1.21166 1.36966 1.05748 0.91390 0.92935 1.24930 0.95041 0.95019 0.98834 1.69900 1.39276 1.18911 1.24655 0.86643 0.77853 0.80464 0.83302 1.20826 1.21260 1.19994 1.22278 0.97415 0.96485 0.89639 1.20551 0.95145 0.95668 0.95212 1.21902 1.01271 0.99925 0.96677 1.21945 0.95092 1.01566 1.01519 1.21967 1.01344 0.95457 1.01365 0.93021 0.91240 0.93700 0.91250 0.95534 0.96273 0.92304 0.92178 0.93770 0.89240 0.95310 0.93119 0.92499 0.96599 0.92954 0.93182 0.92282 0.92312 0.93134 0.92925 0.92232 0.93331 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.37 37.16 0.31 -1.50 16 2 C -0.08 -0.97 1.67 -90.62 -0.15 -1.12 16 3 H 0.07 0.91 6.22 -51.93 -0.32 0.59 16 4 C 0.06 0.87 3.63 -3.82 -0.01 0.85 16 5 N -0.54 -9.91 4.11 -234.68 -0.96 -10.88 16 6 C 0.06 1.11 5.30 -3.83 -0.02 1.09 16 7 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 8 C -0.11 -2.64 5.03 -26.61 -0.13 -2.78 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.51 -14.26 8.56 -34.44 -0.29 -14.55 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 14 N -0.89 -25.59 11.36 55.43 0.63 -24.96 16 15 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.07 1.49 4.68 -3.83 -0.02 1.47 16 20 C -0.07 -0.70 0.57 -154.51 -0.09 -0.79 16 21 C -0.14 -1.34 8.12 37.16 0.30 -1.04 16 22 C -0.14 -1.50 8.13 37.16 0.30 -1.20 16 23 C -0.14 -1.49 7.77 37.16 0.29 -1.21 16 24 H 0.05 0.65 6.43 -51.93 -0.33 0.32 16 25 H 0.07 1.06 7.75 -51.93 -0.40 0.65 16 26 H 0.04 0.51 6.43 -51.93 -0.33 0.17 16 27 H 0.07 1.06 6.55 -51.93 -0.34 0.72 16 28 H 0.03 0.41 6.16 -51.93 -0.32 0.09 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.94 6.12 -51.93 -0.32 0.62 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.06 1.22 8.02 -51.93 -0.42 0.81 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 41 H 0.06 0.66 6.32 -51.93 -0.33 0.33 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.64 6.54 -51.93 -0.34 0.30 16 LS Contribution 333.00 15.07 5.02 5.02 Total: -1.00 -27.71 333.00 -8.95 -36.66 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.64 Total: -1.86 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 0.02 Total: -20.41 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.33 Total: -35.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.71 -8.95 -36.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.131 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds