Wall clock time and date at job start Sun Mar 29 2020 23:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46991 * 2 1 4 4 C 1.52996 * 109.46754 * 120.00299 * 2 1 3 5 5 C 1.53008 * 109.46827 * 175.04298 * 4 2 1 6 6 H 1.08997 * 110.36232 * 57.26363 * 5 4 2 7 7 C 1.54372 * 110.41308 * 294.91050 * 5 4 2 8 8 C 1.54259 * 105.06388 * 217.37002 * 7 5 4 9 9 C 1.54388 * 105.05783 * 359.97438 * 8 7 5 10 10 N 1.48565 * 110.41167 * 179.60772 * 5 4 2 11 11 C 1.46901 * 110.99998 * 277.82253 * 10 5 4 12 12 C 1.53000 * 109.46828 * 164.35384 * 11 10 5 13 13 H 1.08999 * 109.47260 * 55.10592 * 12 11 10 14 14 C 1.53003 * 109.47197 * 295.10623 * 12 11 10 15 15 C 1.53000 * 109.47136 * 175.10557 * 12 11 10 16 16 C 1.50697 * 109.47105 * 185.00060 * 15 12 11 17 17 H 1.08001 * 120.00255 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99705 * 179.97438 * 16 15 12 19 19 N 1.31508 * 120.00295 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00038 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47259 * 90.00005 * 20 18 16 22 22 H 1.48494 * 109.47192 * 210.00306 * 20 18 16 23 23 H 1.48505 * 109.46987 * 330.00250 * 20 18 16 24 24 H 1.08996 * 109.46754 * 59.99827 * 1 2 3 25 25 H 1.09008 * 109.46585 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47088 * 299.99534 * 1 2 3 27 27 H 1.08997 * 109.47025 * 239.99936 * 2 1 3 28 28 H 1.09001 * 109.46762 * 176.07098 * 3 2 1 29 29 H 1.08988 * 109.47438 * 296.07467 * 3 2 1 30 30 H 1.09010 * 109.46767 * 56.07594 * 3 2 1 31 31 H 1.09002 * 109.47344 * 295.04214 * 4 2 1 32 32 H 1.08997 * 109.47569 * 55.04574 * 4 2 1 33 33 H 1.09006 * 110.32505 * 336.26199 * 7 5 4 34 34 H 1.08992 * 110.32423 * 98.36741 * 7 5 4 35 35 H 1.08993 * 110.32888 * 118.89312 * 8 7 5 36 36 H 1.09001 * 110.32389 * 241.10883 * 8 7 5 37 37 H 1.08999 * 110.40955 * 142.63093 * 9 8 7 38 38 H 1.08996 * 110.40763 * 265.07900 * 9 8 7 39 39 H 1.08998 * 109.46576 * 284.35311 * 11 10 5 40 40 H 1.08997 * 109.47227 * 44.35629 * 11 10 5 41 41 H 1.08999 * 109.46581 * 184.72602 * 14 12 11 42 42 H 1.08997 * 109.46857 * 304.72348 * 14 12 11 43 43 H 1.08993 * 109.47094 * 64.72512 * 14 12 11 44 44 H 1.09004 * 109.46966 * 305.00066 * 15 12 11 45 45 H 1.08994 * 109.47150 * 64.99782 * 15 12 11 46 46 H 0.97002 * 120.00383 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5650 -0.8302 1.1884 6 1 4.0124 0.1592 1.0938 7 6 3.9940 -1.7301 0.0098 8 6 5.2118 -2.5203 0.5313 9 6 5.4166 -2.0308 1.9812 10 7 4.0838 -1.5199 2.3977 11 6 4.2041 -0.5862 3.5254 12 6 4.3576 -1.3757 4.8269 13 1 5.2014 -2.0601 4.7393 14 6 3.0795 -2.1734 5.0934 15 6 4.6049 -0.4069 5.9850 16 6 4.8780 -1.1884 7.2442 17 1 4.8759 -2.2682 7.2208 18 6 5.1316 -0.5249 8.4259 19 7 5.1358 0.7898 8.4542 20 14 5.4709 -1.4936 9.9867 21 1 6.9293 -1.7472 10.1049 22 1 5.0069 -0.7153 11.1631 23 1 4.7461 -2.7887 9.9329 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1278 1.4432 0.0704 29 1 1.7353 1.9356 -0.9230 30 1 1.6203 1.9762 0.8528 31 1 1.7510 -0.1588 2.1370 32 1 1.6060 -1.7201 1.2947 33 1 3.1872 -2.4120 -0.2591 34 1 4.2756 -1.1206 -0.8488 35 1 5.0029 -3.5899 0.5185 36 1 6.0931 -2.2985 -0.0707 37 1 5.7241 -2.8574 2.6216 38 1 6.1555 -1.2301 2.0112 39 1 5.0783 0.0483 3.3800 40 1 3.3097 0.0344 3.5803 41 1 3.1559 -2.6692 6.0612 42 1 2.2240 -1.4981 5.0977 43 1 2.9483 -2.9212 4.3114 44 1 5.4643 0.2229 5.7546 45 1 3.7243 0.2189 6.1295 46 1 5.3138 1.2566 9.2856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602440175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:28 Heat of formation + Delta-G solvation = -38.784482 kcal Electronic energy + Delta-G solvation = -19673.481927 eV Core-core repulsion = 16982.300234 eV Total energy + Delta-G solvation = -2691.181693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.33825 -36.22183 -35.03205 -32.44763 -30.64215 -29.90024 -27.24543 -26.76022 -25.55904 -24.91831 -22.73635 -21.24641 -20.51471 -19.23985 -18.66014 -16.44752 -15.84656 -15.47098 -14.78099 -14.51940 -14.42211 -14.02452 -13.40170 -13.30513 -13.01163 -12.71828 -12.45052 -12.36771 -12.26828 -11.75674 -11.67348 -11.34268 -11.25691 -11.05015 -10.95149 -10.89786 -10.81185 -10.63966 -10.53462 -10.36241 -10.35547 -10.20978 -10.12316 -9.55692 -9.06052 -8.91119 -8.29087 -8.07130 -5.94027 -3.94752 3.35281 3.41476 3.45190 4.18561 4.51278 4.69295 4.78812 4.92444 4.95149 4.99749 5.12376 5.37642 5.41768 5.47695 5.56477 5.57894 5.65734 5.71808 5.73531 5.81267 5.85514 5.87110 5.91911 6.02700 6.03485 6.08711 6.16541 6.21166 6.23870 6.25799 6.41725 6.43116 6.47579 6.61119 6.79500 7.08618 7.16074 7.27937 7.34819 7.51398 7.74609 7.91155 8.06819 8.51509 9.11736 9.68374 11.17591 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.004487 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.289294 B = 6239.200277 C = 6748.943390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.098 4.098 5 C 0.059 3.941 6 H 0.050 0.950 7 C -0.117 4.117 8 C -0.124 4.124 9 C 0.033 3.967 10 N -0.502 5.502 11 C 0.051 3.949 12 C -0.076 4.076 13 H 0.053 0.947 14 C -0.121 4.121 15 C 0.027 3.973 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.030 0.970 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.036 0.964 43 H 0.041 0.959 44 H 0.011 0.989 45 H 0.015 0.985 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -2.645 -18.875 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.136 4.136 5 C -0.049 4.049 6 H 0.067 0.933 7 C -0.155 4.155 8 C -0.162 4.162 9 C -0.095 4.095 10 N -0.226 5.226 11 C -0.077 4.077 12 C -0.095 4.095 13 H 0.072 0.928 14 C -0.178 4.178 15 C -0.011 4.011 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.029 0.971 45 H 0.033 0.967 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.222 -2.919 -18.559 19.499 hybrid contribution 0.836 0.358 0.783 1.200 sum -4.387 -2.561 -17.775 18.487 Atomic orbital electron populations 1.21833 0.95390 1.01608 1.01538 1.21118 0.95514 0.96250 0.98606 1.21906 1.01241 0.96151 1.01434 1.21542 0.93917 1.00858 0.97283 1.22690 0.95697 0.95986 0.90563 0.93256 1.22325 0.97953 0.98173 0.97057 1.22292 0.97724 1.00371 0.95856 1.23121 0.91120 0.99818 0.95404 1.65373 1.20180 1.33093 1.03972 1.22490 0.99915 0.93815 0.91460 1.21119 0.97540 0.97729 0.93066 0.92849 1.21566 0.96789 0.99096 1.00378 1.19128 0.96581 0.93937 0.91443 1.21244 1.47090 0.93016 0.93527 0.92583 1.25015 0.95749 0.94805 0.98969 1.69966 1.50223 1.06744 1.26843 0.86643 0.78433 0.80089 0.83139 1.20790 1.21325 1.19874 0.93057 0.92762 0.92637 0.91353 0.92558 0.93150 0.92625 0.91758 0.91281 0.91224 0.92017 0.91330 0.91923 0.90130 0.94140 0.95163 0.91557 0.92709 0.94496 0.94035 0.97077 0.96687 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 37.16 0.34 -0.98 16 2 C -0.10 -0.94 2.82 -90.62 -0.26 -1.20 16 3 C -0.15 -1.47 9.05 37.15 0.34 -1.13 16 4 C -0.10 -1.17 4.30 -26.73 -0.11 -1.29 16 5 C 0.06 0.75 2.09 -66.07 -0.14 0.62 16 6 H 0.05 0.66 6.27 -51.93 -0.33 0.33 16 7 C -0.12 -1.27 5.53 -25.35 -0.14 -1.41 16 8 C -0.12 -1.39 7.00 -25.35 -0.18 -1.57 16 9 C 0.03 0.47 6.11 -2.10 -0.01 0.46 16 10 N -0.50 -7.71 4.52 -222.02 -1.00 -8.71 16 11 C 0.05 0.92 4.21 -3.82 -0.02 0.90 16 12 C -0.08 -1.60 2.44 -90.62 -0.22 -1.82 16 13 H 0.05 1.16 7.62 -51.93 -0.40 0.76 16 14 C -0.12 -2.44 8.91 37.16 0.33 -2.11 16 15 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 16 C -0.51 -14.54 8.34 -34.44 -0.29 -14.83 16 17 H 0.06 1.56 7.08 -52.49 -0.37 1.19 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 20 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.63 7.28 -51.93 -0.38 0.26 16 28 H 0.06 0.57 6.35 -51.93 -0.33 0.24 16 29 H 0.05 0.43 8.14 -51.94 -0.42 0.01 16 30 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.06 0.87 7.25 -51.93 -0.38 0.49 16 32 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 38 H 0.04 0.58 7.68 -51.93 -0.40 0.18 16 39 H 0.03 0.56 7.64 -51.93 -0.40 0.16 16 40 H 0.07 1.20 7.07 -51.93 -0.37 0.84 16 41 H 0.05 1.18 6.83 -51.93 -0.35 0.83 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.76 7.88 -51.93 -0.41 0.35 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -29.56 349.20 -9.73 -39.29 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -9.13 Total: -3.90 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -0.58 Total: -22.29 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.27 Total: -35.32 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.56 -9.73 -39.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.507 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds