Wall clock time and date at job start Sun Mar 29 2020 23:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46991 * 2 1 4 4 C 1.52996 * 109.46754 * 120.00299 * 2 1 3 5 5 C 1.53008 * 109.46827 * 175.04298 * 4 2 1 6 6 H 1.08997 * 110.36232 * 57.26363 * 5 4 2 7 7 C 1.54372 * 110.41308 * 294.91050 * 5 4 2 8 8 C 1.54259 * 105.06388 * 217.37002 * 7 5 4 9 9 C 1.54388 * 105.05783 * 359.97438 * 8 7 5 10 10 N 1.48565 * 110.41167 * 179.60772 * 5 4 2 11 11 C 1.46901 * 110.99998 * 277.82253 * 10 5 4 12 12 C 1.53000 * 109.46828 * 164.35384 * 11 10 5 13 13 H 1.08999 * 109.47260 * 55.10592 * 12 11 10 14 14 C 1.53003 * 109.47197 * 295.10623 * 12 11 10 15 15 C 1.53000 * 109.47136 * 175.10557 * 12 11 10 16 16 C 1.50697 * 109.47105 * 185.00060 * 15 12 11 17 17 H 1.08001 * 120.00255 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99705 * 179.97438 * 16 15 12 19 19 N 1.31508 * 120.00295 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00038 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47259 * 90.00005 * 20 18 16 22 22 H 1.48494 * 109.47192 * 210.00306 * 20 18 16 23 23 H 1.48505 * 109.46987 * 330.00250 * 20 18 16 24 24 H 1.08996 * 109.46754 * 59.99827 * 1 2 3 25 25 H 1.09008 * 109.46585 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47088 * 299.99534 * 1 2 3 27 27 H 1.08997 * 109.47025 * 239.99936 * 2 1 3 28 28 H 1.09001 * 109.46762 * 176.07098 * 3 2 1 29 29 H 1.08988 * 109.47438 * 296.07467 * 3 2 1 30 30 H 1.09010 * 109.46767 * 56.07594 * 3 2 1 31 31 H 1.09002 * 109.47344 * 295.04214 * 4 2 1 32 32 H 1.08997 * 109.47569 * 55.04574 * 4 2 1 33 33 H 1.09006 * 110.32505 * 336.26199 * 7 5 4 34 34 H 1.08992 * 110.32423 * 98.36741 * 7 5 4 35 35 H 1.08993 * 110.32888 * 118.89312 * 8 7 5 36 36 H 1.09001 * 110.32389 * 241.10883 * 8 7 5 37 37 H 1.08999 * 110.40955 * 142.63093 * 9 8 7 38 38 H 1.08996 * 110.40763 * 265.07900 * 9 8 7 39 39 H 1.08998 * 109.46576 * 284.35311 * 11 10 5 40 40 H 1.08997 * 109.47227 * 44.35629 * 11 10 5 41 41 H 1.08999 * 109.46581 * 184.72602 * 14 12 11 42 42 H 1.08997 * 109.46857 * 304.72348 * 14 12 11 43 43 H 1.08993 * 109.47094 * 64.72512 * 14 12 11 44 44 H 1.09004 * 109.46966 * 305.00066 * 15 12 11 45 45 H 1.08994 * 109.47150 * 64.99782 * 15 12 11 46 46 H 0.97002 * 120.00383 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5650 -0.8302 1.1884 6 1 4.0124 0.1592 1.0938 7 6 3.9940 -1.7301 0.0098 8 6 5.2118 -2.5203 0.5313 9 6 5.4166 -2.0308 1.9812 10 7 4.0838 -1.5199 2.3977 11 6 4.2041 -0.5862 3.5254 12 6 4.3576 -1.3757 4.8269 13 1 5.2014 -2.0601 4.7393 14 6 3.0795 -2.1734 5.0934 15 6 4.6049 -0.4069 5.9850 16 6 4.8780 -1.1884 7.2442 17 1 4.8759 -2.2682 7.2208 18 6 5.1316 -0.5249 8.4259 19 7 5.1358 0.7898 8.4542 20 14 5.4709 -1.4936 9.9867 21 1 6.9293 -1.7472 10.1049 22 1 5.0069 -0.7153 11.1631 23 1 4.7461 -2.7887 9.9329 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1278 1.4432 0.0704 29 1 1.7353 1.9356 -0.9230 30 1 1.6203 1.9762 0.8528 31 1 1.7510 -0.1588 2.1370 32 1 1.6060 -1.7201 1.2947 33 1 3.1872 -2.4120 -0.2591 34 1 4.2756 -1.1206 -0.8488 35 1 5.0029 -3.5899 0.5185 36 1 6.0931 -2.2985 -0.0707 37 1 5.7241 -2.8574 2.6216 38 1 6.1555 -1.2301 2.0112 39 1 5.0783 0.0483 3.3800 40 1 3.3097 0.0344 3.5803 41 1 3.1559 -2.6692 6.0612 42 1 2.2240 -1.4981 5.0977 43 1 2.9483 -2.9212 4.3114 44 1 5.4643 0.2229 5.7546 45 1 3.7243 0.2189 6.1295 46 1 5.3138 1.2566 9.2856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602440175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:28 Heat of formation + Delta-G solvation = -54.217940 kcal Electronic energy + Delta-G solvation = -19674.151172 eV Core-core repulsion = 16982.300234 eV Total energy + Delta-G solvation = -2691.850938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45446 -37.45805 -36.44401 -34.45517 -32.02966 -30.88525 -28.78979 -28.00230 -26.91459 -26.13314 -24.61501 -22.24549 -21.65821 -20.52179 -19.98385 -18.53319 -16.99167 -16.75111 -16.34979 -15.78952 -15.71830 -15.31296 -14.78447 -14.44675 -14.19539 -14.03002 -13.88904 -13.68959 -13.36691 -13.08199 -13.04962 -12.80102 -12.61508 -12.51384 -12.36354 -12.25221 -12.06814 -12.03459 -11.82331 -11.66514 -11.45708 -11.42066 -11.25759 -11.21150 -11.05648 -10.85889 -10.54056 -9.33646 -8.18000 -6.27356 1.39395 1.40652 1.51891 2.41566 3.03940 3.15237 3.69588 3.79982 4.01069 4.10001 4.12840 4.20727 4.24407 4.37831 4.41656 4.52753 4.57571 4.63538 4.79749 4.80734 4.82146 4.86577 4.90768 4.95256 5.01755 5.03296 5.06410 5.13302 5.16298 5.20718 5.25946 5.26460 5.34947 5.39647 5.45507 5.49312 5.51989 5.55880 5.58812 5.79025 5.87698 6.09181 6.14087 6.31989 6.88124 7.40893 8.94227 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.004487 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.289294 B = 6239.200277 C = 6748.943390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.093 4.093 5 C 0.057 3.943 6 H 0.044 0.956 7 C -0.110 4.110 8 C -0.117 4.117 9 C 0.027 3.973 10 N -0.509 5.509 11 C 0.065 3.935 12 C -0.066 4.066 13 H 0.048 0.952 14 C -0.109 4.109 15 C 0.033 3.967 16 C -0.529 4.529 17 H 0.060 0.940 18 C -0.002 4.002 19 N -0.936 5.936 20 Si 0.961 3.039 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.263 1.263 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.019 0.981 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.062 0.938 44 H -0.017 1.017 45 H -0.011 1.011 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -4.087 -20.371 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.131 4.131 5 C -0.051 4.051 6 H 0.061 0.939 7 C -0.148 4.148 8 C -0.155 4.155 9 C -0.101 4.101 10 N -0.232 5.232 11 C -0.063 4.063 12 C -0.085 4.085 13 H 0.066 0.934 14 C -0.166 4.166 15 C -0.004 4.004 16 C -0.567 4.567 17 H 0.078 0.922 18 C -0.199 4.199 19 N -0.577 5.577 20 Si 0.786 3.214 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.187 1.187 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.001 0.999 45 H 0.007 0.993 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.502 -4.373 -20.073 21.268 hybrid contribution 0.927 0.845 1.229 1.756 sum -4.575 -3.528 -18.844 19.710 Atomic orbital electron populations 1.21825 0.94745 1.01960 1.01750 1.21086 0.96011 0.95958 0.97833 1.21904 1.00805 0.96270 1.01735 1.21506 0.93383 1.00642 0.97616 1.22795 0.96055 0.96068 0.90229 0.93852 1.22321 0.97996 0.98021 0.96489 1.22273 0.98712 1.00774 0.93716 1.23200 0.90225 0.99268 0.97452 1.65322 1.21148 1.32430 1.04318 1.22161 0.99135 0.93578 0.91423 1.20920 0.97957 0.96780 0.92852 0.93376 1.21434 0.95941 0.99143 1.00099 1.19006 0.94092 0.94120 0.93190 1.21617 1.47049 0.93406 0.94590 0.92199 1.25952 0.95356 0.95822 1.02741 1.70103 1.51066 1.08549 1.27956 0.85501 0.78635 0.78799 0.78461 1.19863 1.20796 1.18728 0.91700 0.92356 0.93602 0.89908 0.93110 0.91607 0.93789 0.93979 0.91503 0.90262 0.90085 0.90537 0.90149 0.91061 0.94901 0.96319 0.92068 0.94401 0.94586 0.91883 0.99901 0.99280 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.19 71.98 0.66 -1.71 16 2 C -0.09 -1.60 2.82 -10.79 -0.03 -1.63 16 3 C -0.15 -2.73 9.05 71.98 0.65 -2.08 16 4 C -0.09 -2.14 4.30 30.60 0.13 -2.01 16 5 C 0.06 1.37 2.09 45.06 0.09 1.47 16 6 H 0.04 1.12 6.27 -2.39 -0.01 1.11 16 7 C -0.11 -2.06 5.53 31.49 0.17 -1.89 16 8 C -0.12 -2.31 7.00 31.49 0.22 -2.09 16 9 C 0.03 0.72 6.11 86.43 0.53 1.25 16 10 N -0.51 -15.33 4.52 -856.34 -3.87 -19.20 16 11 C 0.07 2.43 4.21 86.30 0.36 2.79 16 12 C -0.07 -2.87 2.44 -10.79 -0.03 -2.90 16 13 H 0.05 2.13 7.62 -2.39 -0.02 2.11 16 14 C -0.11 -4.39 8.91 71.98 0.64 -3.75 16 15 C 0.03 1.83 4.45 29.85 0.13 1.96 16 16 C -0.53 -30.74 8.34 25.60 0.21 -30.53 16 17 H 0.06 3.36 7.08 -2.91 -0.02 3.34 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 20 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 1.27 7.28 -2.39 -0.02 1.25 16 28 H 0.05 0.97 6.35 -2.39 -0.02 0.96 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.04 1.14 7.25 -2.39 -0.02 1.12 16 32 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.08 1.37 7.82 -2.38 -0.02 1.35 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 2.05 7.92 -2.39 -0.02 2.03 16 38 H 0.03 0.94 7.68 -2.39 -0.02 0.92 16 39 H 0.02 0.72 7.64 -2.39 -0.02 0.70 16 40 H 0.06 2.30 7.07 -2.39 -0.02 2.29 16 41 H 0.04 1.63 6.83 -2.39 -0.02 1.61 16 42 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 2.26 7.88 -2.39 -0.02 2.24 16 44 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 45 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 46 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -64.21 349.20 3.54 -60.66 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.89 Total: 9.99 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 4.22 Total: -40.75 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -3.59 Total: -77.20 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.21 3.54 -60.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.446 kcal (2) G-P(sol) polarization free energy of solvation -64.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds