Wall clock time and date at job start Sun Mar 29 2020 23:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47307 * 2 1 4 4 C 1.53006 * 109.46724 * 119.99705 * 2 1 3 5 5 C 1.53003 * 109.47023 * 65.00192 * 4 2 1 6 6 N 1.46899 * 109.47155 * 185.70296 * 5 4 2 7 7 C 1.46891 * 111.00065 * 163.54765 * 6 5 4 8 8 C 1.53004 * 109.47562 * 196.08068 * 7 6 5 9 9 H 1.08993 * 109.46585 * 301.14382 * 8 7 6 10 10 C 1.52990 * 109.47541 * 181.13884 * 8 7 6 11 11 C 1.53000 * 109.46772 * 61.13859 * 8 7 6 12 12 C 1.50701 * 109.47200 * 185.00241 * 11 8 7 13 13 H 1.07996 * 119.99986 * 0.02562 * 12 11 8 14 14 C 1.37881 * 119.99869 * 179.97438 * 12 11 8 15 15 N 1.31503 * 120.00187 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99580 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46863 * 90.00043 * 16 14 12 18 18 H 1.48496 * 109.46864 * 210.00191 * 16 14 12 19 19 H 1.48501 * 109.47294 * 330.00367 * 16 14 12 20 20 C 1.46903 * 111.00219 * 287.50378 * 6 5 4 21 21 C 1.52995 * 117.49782 * 141.38288 * 20 6 5 22 22 C 1.52994 * 60.00159 * 252.50896 * 21 20 6 23 23 H 1.09001 * 109.47043 * 60.00011 * 1 2 3 24 24 H 1.09005 * 109.47231 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47173 * 300.00131 * 1 2 3 26 26 H 1.08996 * 109.47173 * 239.99869 * 2 1 3 27 27 H 1.08992 * 109.47603 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47060 * 299.99979 * 3 2 1 29 29 H 1.09008 * 109.47223 * 59.99443 * 3 2 1 30 30 H 1.09000 * 109.46707 * 184.99795 * 4 2 1 31 31 H 1.08992 * 109.47549 * 305.00060 * 4 2 1 32 32 H 1.08997 * 109.46911 * 305.70641 * 5 4 2 33 33 H 1.09004 * 109.46961 * 65.70473 * 5 4 2 34 34 H 1.09008 * 109.47382 * 316.07775 * 7 6 5 35 35 H 1.09003 * 109.47378 * 76.07753 * 7 6 5 36 36 H 1.09004 * 109.47563 * 304.34192 * 10 8 7 37 37 H 1.09002 * 109.47494 * 64.34008 * 10 8 7 38 38 H 1.08998 * 109.47276 * 184.34709 * 10 8 7 39 39 H 1.09006 * 109.47456 * 305.00547 * 11 8 7 40 40 H 1.09003 * 109.47177 * 65.00126 * 11 8 7 41 41 H 0.97006 * 120.00398 * 179.97438 * 15 14 12 42 42 H 1.09004 * 115.54652 * 287.09033 * 20 6 5 43 43 H 1.08999 * 117.50159 * 359.97438 * 21 20 6 44 44 H 1.09005 * 117.49610 * 145.01892 * 21 20 6 45 45 H 1.09002 * 117.49917 * 252.51327 * 22 21 20 46 46 H 1.09001 * 117.49836 * 107.49095 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6351 -2.1955 1.1881 6 7 2.0040 -2.8573 2.4466 7 6 1.3029 -4.1398 2.5921 8 6 1.3852 -4.6039 4.0478 9 1 2.4308 -4.7074 4.3375 10 6 0.6794 -5.9534 4.1936 11 6 0.7055 -3.5727 4.9509 12 6 0.8930 -3.9669 6.3933 13 1 1.4425 -4.8630 6.6411 14 6 0.3641 -3.1829 7.3966 15 7 -0.3045 -2.0914 7.0949 16 14 0.5973 -3.6712 9.1846 17 1 1.8464 -3.0602 9.7057 18 1 -0.5591 -3.1919 9.9834 19 1 0.6899 -5.1499 9.2858 20 6 3.4588 -3.0391 2.5391 21 6 4.1109 -2.8324 3.9076 22 6 4.3110 -1.7956 2.8005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1262 -0.6443 1.2952 31 1 1.6053 -0.2617 2.1370 32 1 0.5579 -2.2706 1.0402 33 1 2.1504 -2.6795 0.3584 34 1 0.2576 -4.0168 2.3086 35 1 1.7692 -4.8842 1.9466 36 1 -0.3452 -5.8687 3.8314 37 1 1.2100 -6.7059 3.6101 38 1 0.6704 -6.2472 5.2432 39 1 1.1501 -2.5920 4.7815 40 1 -0.3592 -3.5335 4.7204 41 1 -0.6770 -1.5400 7.8008 42 1 3.8783 -3.8099 1.8925 43 1 3.4606 -2.5612 4.7393 44 1 4.9596 -3.4675 4.1617 45 1 5.2913 -1.7485 2.3263 46 1 3.7922 -0.8425 2.9039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602440920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:11 Heat of formation + Delta-G solvation = -2.448570 kcal Electronic energy + Delta-G solvation = -19886.948167 eV Core-core repulsion = 17197.342118 eV Total energy + Delta-G solvation = -2689.606050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.74811 -36.27845 -35.10870 -33.15410 -31.84476 -28.77554 -27.13010 -26.84942 -24.79904 -22.71974 -22.64942 -21.95812 -20.09225 -19.81691 -18.59974 -16.25739 -15.75698 -15.20861 -14.94006 -14.62167 -14.33734 -13.77105 -13.51383 -13.30099 -12.91805 -12.65997 -12.26616 -12.07076 -11.86824 -11.79957 -11.39791 -11.34223 -11.18233 -11.09393 -10.88467 -10.80393 -10.54657 -10.50313 -10.45142 -10.24539 -10.02966 -9.75163 -9.58235 -9.46847 -8.97108 -8.77607 -8.19416 -7.72856 -5.84190 -3.84113 3.38947 3.45430 3.48222 4.18409 4.22402 4.57390 4.94296 4.98748 5.06324 5.34607 5.40091 5.43054 5.50775 5.51960 5.65160 5.67276 5.77209 5.80480 5.81821 5.89916 5.95817 5.99402 6.03295 6.07996 6.15689 6.18577 6.23528 6.30585 6.34058 6.44927 6.47233 6.52240 6.61022 6.65560 6.83388 7.07706 7.14918 7.40562 7.63507 7.69992 7.91996 8.14803 8.28578 8.63402 9.24376 9.77749 11.26796 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.005525 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.010863 B = 5066.948365 C = 5358.862110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.117 4.117 5 C 0.061 3.939 6 N -0.499 5.499 7 C 0.069 3.931 8 C -0.083 4.083 9 H 0.059 0.941 10 C -0.134 4.134 11 C 0.038 3.962 12 C -0.510 4.510 13 H 0.051 0.949 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.882 3.118 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.276 1.276 20 C 0.010 3.990 21 C -0.158 4.158 22 C -0.180 4.180 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.065 0.935 35 H 0.016 0.984 36 H 0.041 0.959 37 H 0.026 0.974 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.006 0.994 41 H 0.257 0.743 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 2.014 -14.127 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.155 4.155 5 C -0.067 4.067 6 N -0.222 5.222 7 C -0.058 4.058 8 C -0.102 4.102 9 H 0.078 0.922 10 C -0.192 4.192 11 C 0.001 3.999 12 C -0.549 4.549 13 H 0.069 0.931 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.711 3.289 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.201 1.201 20 C -0.099 4.099 21 C -0.195 4.195 22 C -0.218 4.218 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.034 0.966 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.519 2.454 -13.665 14.940 hybrid contribution 0.281 -0.801 0.371 0.926 sum 5.800 1.653 -13.294 14.598 Atomic orbital electron populations 1.21899 0.95388 1.01873 1.01480 1.21093 0.95890 0.95991 0.98482 1.21820 1.00697 0.96226 1.01539 1.21876 1.01349 0.94628 0.97631 1.22111 1.00216 0.94493 0.89895 1.61693 1.03808 1.23150 1.33549 1.22232 0.97236 0.87994 0.98357 1.21207 1.00170 0.95953 0.92896 0.92242 1.21729 0.99149 0.96504 1.01847 1.19015 0.94769 0.94167 0.91937 1.21332 1.33384 1.08311 0.91872 0.93086 1.24971 0.95698 0.95212 0.98472 1.69976 1.36759 1.14591 1.32154 0.86756 0.77503 0.78642 0.86028 1.20882 1.21476 1.20102 1.22242 0.87855 0.99142 1.00637 1.23115 1.01884 1.01173 0.93341 1.23139 0.99613 0.94947 1.04062 0.93363 0.92495 0.92351 0.91916 0.92946 0.93160 0.92533 0.91212 0.90808 0.91026 0.95896 0.91693 0.96592 0.93943 0.95475 0.91663 0.94752 0.97584 0.93365 0.90917 0.86505 0.89658 0.89756 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.96 37.16 0.33 -1.34 16 2 C -0.10 -1.06 2.92 -90.62 -0.26 -1.33 16 3 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 4 C -0.12 -1.55 3.78 -26.73 -0.10 -1.65 16 5 C 0.06 0.88 4.86 -3.82 -0.02 0.86 16 6 N -0.50 -8.55 3.75 -226.65 -0.85 -9.40 16 7 C 0.07 1.24 4.41 -3.83 -0.02 1.22 16 8 C -0.08 -1.73 2.22 -90.62 -0.20 -1.93 16 9 H 0.06 1.26 6.52 -51.93 -0.34 0.92 16 10 C -0.13 -2.60 9.07 37.15 0.34 -2.26 16 11 C 0.04 0.98 4.37 -27.88 -0.12 0.86 16 12 C -0.51 -14.35 8.35 -34.44 -0.29 -14.64 16 13 H 0.05 1.41 7.07 -52.49 -0.37 1.04 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 16 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.01 0.16 4.40 -67.71 -0.30 -0.14 16 21 C -0.16 -2.59 9.08 -26.74 -0.24 -2.84 16 22 C -0.18 -2.56 8.58 -26.73 -0.23 -2.79 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.65 6.45 -51.93 -0.33 0.32 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.07 0.90 5.27 -51.93 -0.27 0.62 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.05 5.89 -51.93 -0.31 0.74 16 33 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 34 H 0.06 1.17 7.72 -51.92 -0.40 0.77 16 35 H 0.02 0.26 8.05 -51.93 -0.42 -0.15 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.36 6.84 -51.93 -0.36 1.01 16 39 H 0.03 0.95 7.15 -51.93 -0.37 0.58 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.12 2.36 7.81 -51.93 -0.41 1.96 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.10 1.53 6.24 -51.93 -0.32 1.21 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -29.41 350.74 -9.66 -39.08 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.95 Total: 0.15 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -0.87 Total: -25.56 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.11 Total: -35.88 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.41 -9.66 -39.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.626 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds