Wall clock time and date at job start Sun Mar 29 2020 23:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47573 * 2 1 4 4 C 1.52998 * 109.47095 * 239.99782 * 2 1 3 5 5 C 1.50695 * 109.47149 * 65.00015 * 4 2 1 6 6 H 1.08002 * 120.00075 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00558 * 180.02562 * 5 4 2 8 8 N 1.31503 * 120.00625 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99566 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47327 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47162 * 210.00235 * 9 7 5 12 12 H 1.48502 * 109.47016 * 329.99648 * 9 7 5 13 13 C 1.53003 * 109.47177 * 120.00068 * 2 1 3 14 14 N 1.46901 * 109.46976 * 291.39000 * 13 2 1 15 15 C 1.47903 * 111.00151 * 59.62517 * 14 13 2 16 16 C 1.53999 * 107.05495 * 145.84121 * 15 14 13 17 17 C 1.54590 * 105.14302 * 358.77943 * 16 15 14 18 18 C 1.48535 * 111.00170 * 177.02679 * 14 13 2 19 19 H 1.09007 * 110.66404 * 318.88085 * 18 14 13 20 20 C 1.52997 * 110.66903 * 81.83873 * 18 14 13 21 21 C 1.53005 * 109.46680 * 53.81097 * 20 18 14 22 22 C 1.52995 * 109.47181 * 173.80322 * 20 18 14 23 23 C 1.52998 * 109.47446 * 293.81008 * 20 18 14 24 24 H 1.09009 * 109.46782 * 317.01637 * 1 2 3 25 25 H 1.08995 * 109.47094 * 77.01415 * 1 2 3 26 26 H 1.08993 * 109.47235 * 197.01888 * 1 2 3 27 27 H 1.08997 * 109.47147 * 185.00022 * 4 2 1 28 28 H 1.09004 * 109.47241 * 305.00066 * 4 2 1 29 29 H 0.97007 * 120.00377 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47158 * 51.38782 * 13 2 1 31 31 H 1.09001 * 109.47289 * 171.38699 * 13 2 1 32 32 H 1.08996 * 109.92035 * 265.19707 * 15 14 13 33 33 H 1.09004 * 109.91527 * 26.49932 * 15 14 13 34 34 H 1.09000 * 110.31068 * 239.86232 * 16 15 14 35 35 H 1.08998 * 110.38541 * 117.74185 * 16 15 14 36 36 H 1.08996 * 110.72368 * 219.68248 * 17 16 15 37 37 H 1.09002 * 110.87769 * 96.46795 * 17 16 15 38 38 H 1.08995 * 109.47353 * 66.14968 * 21 20 18 39 39 H 1.09002 * 109.46509 * 186.15339 * 21 20 18 40 40 H 1.09000 * 109.46993 * 306.14475 * 21 20 18 41 41 H 1.09008 * 109.46943 * 60.00466 * 22 20 18 42 42 H 1.09003 * 109.47415 * 180.02562 * 22 20 18 43 43 H 1.08995 * 109.47748 * 300.00999 * 22 20 18 44 44 H 1.09004 * 109.47226 * 77.61787 * 23 20 18 45 45 H 1.09004 * 109.47029 * 197.61768 * 23 20 18 46 46 H 1.09006 * 109.47010 * 317.61600 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4765 6 1 1.0806 0.9745 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 1.6448 0.2771 -4.7993 9 14 2.9614 -1.9897 -3.9029 10 1 2.0214 -3.1334 -4.0194 11 1 3.8099 -1.9204 -5.1196 12 1 3.8235 -2.1773 -2.7083 13 6 2.0400 -0.7213 1.2492 14 7 1.7270 0.0805 2.4397 15 6 0.2688 0.2926 2.5676 16 6 -0.0545 0.3114 4.0731 17 6 1.2984 0.0668 4.7798 18 6 2.1443 -0.6224 3.6798 19 1 1.9077 -1.6847 3.6180 20 6 3.6381 -0.4181 3.9397 21 6 3.9551 1.0788 3.9425 22 6 4.0066 -1.0198 5.2972 23 6 4.4464 -1.1085 2.8394 24 1 -0.3633 0.7519 0.7007 25 1 -0.3633 0.2309 -1.0013 26 1 -0.3633 -0.9826 0.3008 27 1 3.1262 -0.7995 -1.2055 28 1 1.6053 -1.7199 -1.2951 29 1 1.8914 -0.0463 -5.6800 30 1 1.5565 -1.6948 1.3295 31 1 3.1191 -0.8565 1.1757 32 1 -0.0090 1.2449 2.1161 33 1 -0.2688 -0.5223 2.0826 34 1 -0.7588 -0.4834 4.3188 35 1 -0.4625 1.2801 4.3617 36 1 1.1714 -0.5924 5.6385 37 1 1.7543 1.0094 5.0830 38 1 3.4652 1.5524 4.7932 39 1 5.0331 1.2216 4.0183 40 1 3.5932 1.5285 3.0180 41 1 3.7807 -2.0862 5.2953 42 1 5.0708 -0.8739 5.4827 43 1 3.4307 -0.5280 6.0811 44 1 4.4307 -0.4957 1.9380 45 1 5.4762 -1.2387 3.1723 46 1 4.0083 -2.0831 2.6239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602460331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:43 Heat of formation + Delta-G solvation = -23.184686 kcal Electronic energy + Delta-G solvation = -20372.772719 eV Core-core repulsion = 17682.267484 eV Total energy + Delta-G solvation = -2690.505235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.02827 -37.69112 -36.07973 -34.46382 -32.24940 -29.96136 -28.58770 -28.11390 -27.90841 -27.00360 -24.24924 -22.43941 -21.50741 -20.79032 -19.29740 -18.87780 -17.30468 -16.94398 -16.14849 -15.63346 -15.20732 -15.04171 -14.80408 -14.61393 -14.36653 -14.34525 -13.77992 -13.55422 -13.34876 -13.30867 -12.96428 -12.85375 -12.79933 -12.55126 -12.32977 -12.27126 -11.95994 -11.82906 -11.76152 -11.62869 -11.51827 -11.21068 -11.14334 -11.09059 -10.94661 -10.77393 -10.72759 -9.18688 -8.27097 -6.29081 1.33642 1.35650 1.47568 2.36364 3.07874 3.09043 3.71194 3.76579 4.06077 4.09190 4.16194 4.21531 4.29253 4.31922 4.44782 4.51751 4.63955 4.69558 4.75827 4.79585 4.85737 4.89658 4.96766 4.99325 5.00494 5.03808 5.05877 5.08052 5.15317 5.20170 5.24102 5.31073 5.32086 5.37826 5.40327 5.47279 5.54963 5.60279 5.70501 5.72504 5.73655 6.16593 6.24740 6.35705 6.77917 7.34184 8.89770 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026648 B = 0.005621 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.500684 B = 4980.227840 C = 5627.982413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 H 0.050 0.950 4 C -0.003 4.003 5 C -0.517 4.517 6 H 0.034 0.966 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.248 1.248 13 C 0.049 3.951 14 N -0.511 5.511 15 C 0.024 3.976 16 C -0.131 4.131 17 C -0.113 4.113 18 C 0.072 3.928 19 H 0.043 0.957 20 C -0.052 4.052 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.148 4.148 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.015 0.985 28 H 0.012 0.988 29 H 0.265 0.735 30 H 0.025 0.975 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -3.686 23.613 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.041 4.041 5 C -0.555 4.555 6 H 0.052 0.948 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.171 1.171 13 C -0.079 4.079 14 N -0.235 5.235 15 C -0.103 4.103 16 C -0.169 4.169 17 C -0.151 4.151 18 C -0.036 4.036 19 H 0.061 0.939 20 C -0.052 4.052 21 C -0.187 4.187 22 C -0.193 4.193 23 C -0.205 4.205 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.484 -3.194 23.366 23.714 hybrid contribution -0.245 -1.185 -1.164 1.679 sum 2.240 -4.379 22.202 22.740 Atomic orbital electron populations 1.22315 0.95724 1.01074 1.01116 1.20838 0.95816 0.98823 0.93162 0.93152 1.19519 0.95794 0.95464 0.93328 1.21425 1.34291 1.08593 0.91200 0.94797 1.25970 0.96964 1.00899 0.95497 1.70066 1.49116 1.41587 0.98693 0.85721 0.79415 0.79606 0.78293 1.19362 1.20995 1.17150 1.22633 1.01782 0.93661 0.89845 1.64675 1.13551 1.43784 1.01500 1.23378 0.88885 1.01101 0.96936 1.22464 0.97914 1.02705 0.93787 1.22567 0.94283 1.01368 0.96875 1.22896 0.95289 0.95555 0.89891 0.93948 1.20393 0.92818 0.96363 0.95632 1.21759 1.00252 0.94592 1.02063 1.21852 1.01738 1.00488 0.95217 1.22129 1.00050 0.99717 0.98606 0.90433 0.95045 0.93270 0.96692 0.96960 0.92660 0.95700 0.89541 0.90854 0.93426 0.91005 0.90416 0.89809 0.90131 0.92121 0.93242 0.93123 0.92766 0.92049 0.91527 0.93160 0.91945 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 7.58 71.98 0.55 -4.99 16 2 C -0.07 -2.73 2.42 -10.79 -0.03 -2.76 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.00 -0.15 3.51 29.85 0.10 -0.05 16 5 C -0.52 -30.46 8.71 25.60 0.22 -30.23 16 6 H 0.03 2.20 7.45 -2.91 -0.02 2.18 16 7 C 0.00 0.17 5.47 84.66 0.46 0.63 16 8 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 9 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 13 C 0.05 1.59 4.03 86.30 0.35 1.94 16 14 N -0.51 -14.13 3.97 -858.23 -3.41 -17.54 16 15 C 0.02 0.62 4.61 86.45 0.40 1.02 16 16 C -0.13 -2.49 6.93 31.47 0.22 -2.27 16 17 C -0.11 -2.01 5.28 31.80 0.17 -1.84 16 18 C 0.07 1.59 1.72 45.26 0.08 1.67 16 19 H 0.04 1.00 7.93 -2.38 -0.02 0.98 16 20 C -0.05 -1.05 0.65 -52.18 -0.03 -1.08 16 21 C -0.13 -2.74 7.88 71.98 0.57 -2.17 16 22 C -0.14 -2.10 8.17 71.98 0.59 -1.51 16 23 C -0.15 -3.40 7.09 71.98 0.51 -2.88 16 24 H 0.08 2.55 4.66 -2.38 -0.01 2.54 16 25 H 0.03 1.40 6.65 -2.39 -0.02 1.38 16 26 H 0.05 1.71 7.01 -2.39 -0.02 1.69 16 27 H 0.01 0.71 7.19 -2.39 -0.02 0.69 16 28 H 0.01 0.58 7.57 -2.38 -0.02 0.56 16 29 H 0.26 15.84 8.31 -92.70 -0.77 15.06 16 30 H 0.02 0.81 7.83 -2.39 -0.02 0.79 16 31 H 0.09 2.84 4.23 -2.39 -0.01 2.83 16 32 H 0.07 2.01 6.42 -2.39 -0.02 1.99 16 33 H 0.05 1.29 5.48 -2.39 -0.01 1.27 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.19 8.02 -2.39 -0.02 1.18 16 37 H 0.08 1.41 6.01 -2.39 -0.01 1.40 16 38 H 0.06 1.12 6.45 -2.39 -0.02 1.11 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 1.34 7.29 -2.39 -0.02 1.32 16 41 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 0.89 7.19 -2.39 -0.02 0.87 16 44 H 0.05 1.37 6.04 -2.39 -0.01 1.36 16 45 H 0.06 1.25 8.01 -2.39 -0.02 1.23 16 46 H 0.05 1.10 7.76 -2.38 -0.02 1.09 16 Total: -1.00 -65.31 326.57 3.79 -61.51 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.87 Total: 14.05 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 4.15 Total: -44.53 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -3.11 Total: -78.37 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -65.31 3.79 -61.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602460331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.330 kcal (2) G-P(sol) polarization free energy of solvation -65.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds