Wall clock time and date at job start Sun Mar 29 2020 23:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47162 * 2 1 4 4 C 1.53003 * 109.47617 * 120.00124 * 2 1 3 5 5 C 1.50693 * 109.46992 * 295.00199 * 4 2 1 6 6 H 1.07998 * 120.00611 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00011 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99791 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00309 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47191 * 59.99958 * 9 7 5 11 11 H 1.48499 * 109.47320 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47035 * 300.00513 * 9 7 5 13 13 C 1.53000 * 109.47219 * 240.00524 * 2 1 3 14 14 N 1.46893 * 109.47130 * 68.39927 * 13 2 1 15 15 C 1.47901 * 111.00465 * 293.04130 * 14 13 2 16 16 C 1.53997 * 107.06141 * 214.15787 * 15 14 13 17 17 C 1.54587 * 105.13833 * 1.22315 * 16 15 14 18 18 C 1.48538 * 111.00164 * 175.64317 * 14 13 2 19 19 H 1.09000 * 110.66599 * 41.28533 * 18 14 13 20 20 C 1.52993 * 110.66920 * 278.15678 * 18 14 13 21 21 C 1.53000 * 109.47205 * 61.88170 * 20 18 14 22 22 C 1.52998 * 109.47391 * 181.88053 * 20 18 14 23 23 C 1.53001 * 109.47457 * 301.88243 * 20 18 14 24 24 H 1.09008 * 109.47090 * 285.93185 * 1 2 3 25 25 H 1.08990 * 109.47382 * 45.93558 * 1 2 3 26 26 H 1.09001 * 109.46949 * 165.94093 * 1 2 3 27 27 H 1.09001 * 109.47303 * 174.99701 * 4 2 1 28 28 H 1.09005 * 109.46788 * 55.00390 * 4 2 1 29 29 H 0.96995 * 119.99768 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47545 * 188.40300 * 13 2 1 31 31 H 1.09000 * 109.46933 * 308.40287 * 13 2 1 32 32 H 1.09010 * 109.91357 * 333.50935 * 15 14 13 33 33 H 1.09001 * 109.92003 * 94.60259 * 15 14 13 34 34 H 1.08998 * 110.30535 * 120.13837 * 16 15 14 35 35 H 1.08998 * 110.30585 * 242.20715 * 16 15 14 36 36 H 1.08998 * 110.72537 * 140.31953 * 17 16 15 37 37 H 1.09008 * 110.72640 * 263.59954 * 17 16 15 38 38 H 1.08997 * 109.47449 * 45.17467 * 21 20 18 39 39 H 1.09000 * 109.47457 * 165.17323 * 21 20 18 40 40 H 1.09006 * 109.47361 * 285.17554 * 21 20 18 41 41 H 1.08999 * 109.47169 * 60.00252 * 22 20 18 42 42 H 1.09000 * 109.47129 * 180.02562 * 22 20 18 43 43 H 1.08996 * 109.47273 * 300.00301 * 22 20 18 44 44 H 1.09002 * 109.46899 * 60.22496 * 23 20 18 45 45 H 1.08996 * 109.47456 * 180.22685 * 23 20 18 46 46 H 1.09003 * 109.46986 * 300.23135 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3758 7 6 1.9925 -0.4024 3.7283 8 7 2.6758 -1.5194 3.8511 9 14 1.4990 0.5626 5.2497 10 1 0.0191 0.6702 5.3091 11 1 1.9940 -0.1375 6.4621 12 1 2.0920 1.9227 5.1871 13 6 2.0400 -0.7211 -1.2493 14 7 1.7225 0.0783 -2.4400 15 6 0.2618 0.1390 -2.6638 16 6 0.0390 0.1687 -4.1873 17 6 1.4543 0.0894 -4.8039 18 6 2.2943 -0.5393 -3.6639 19 1 2.1669 -1.6217 -3.6441 20 6 3.7715 -0.1708 -3.8151 21 6 4.5576 -0.7140 -2.6202 22 6 4.3199 -0.7813 -5.1064 23 6 3.9144 1.3515 -3.8700 24 1 -0.3634 0.2821 0.9883 25 1 -0.3633 0.7146 -0.7384 26 1 -0.3633 -0.9969 -0.2496 27 1 3.1264 -0.7995 1.2055 28 1 1.6055 -1.7199 1.2950 29 1 2.9231 -1.8423 4.7316 30 1 3.1195 -0.8531 -1.1775 31 1 1.5592 -1.6962 -1.3276 32 1 -0.2164 -0.7421 -2.2357 33 1 -0.1466 1.0411 -2.2082 34 1 -0.5581 -0.6883 -4.4990 35 1 -0.4514 1.0971 -4.4799 36 1 1.4561 -0.5536 -5.6841 37 1 1.8237 1.0847 -5.0513 38 1 4.2524 -1.7412 -2.4211 39 1 5.6239 -0.6890 -2.8450 40 1 4.3567 -0.0988 -1.7431 41 1 3.7599 -0.3943 -5.9577 42 1 5.3724 -0.5191 -5.2139 43 1 4.2182 -1.8658 -5.0673 44 1 3.5274 1.7862 -2.9484 45 1 4.9663 1.6140 -3.9818 46 1 3.3510 1.7390 -4.7189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602460334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:59 Heat of formation + Delta-G solvation = -11.797496 kcal Electronic energy + Delta-G solvation = -20315.425042 eV Core-core repulsion = 17625.413592 eV Total energy + Delta-G solvation = -2690.011449 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88079 -36.18474 -34.76863 -32.50384 -30.67400 -28.24284 -27.26867 -27.13791 -26.43485 -25.56225 -22.75017 -21.35586 -20.42925 -19.06831 -18.24738 -16.32168 -16.20988 -15.47049 -14.45401 -14.43283 -14.08229 -13.77673 -13.51322 -13.33977 -12.92638 -12.51903 -12.33484 -12.12311 -12.07732 -11.89632 -11.68647 -11.52237 -11.31292 -11.21190 -10.97279 -10.83274 -10.73371 -10.66490 -10.39894 -10.24113 -10.14427 -9.96073 -9.75880 -9.50639 -9.03568 -8.88454 -8.28891 -7.98479 -5.94054 -3.94811 3.36625 3.40860 3.43534 4.24755 4.51171 4.69595 4.76565 5.04581 5.08402 5.15468 5.25593 5.41582 5.48222 5.54931 5.65376 5.68272 5.79112 5.81970 5.86996 5.89944 5.94098 5.96250 6.00278 6.06878 6.07855 6.17613 6.24217 6.26757 6.33255 6.40804 6.44987 6.54394 6.61764 6.67186 6.70958 7.01611 7.22153 7.24311 7.35180 7.56443 7.74896 7.92011 8.06774 8.51168 9.11398 9.68155 11.17468 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029009 B = 0.005139 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.994125 B = 5446.785344 C = 6002.432084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.063 0.937 4 C 0.029 3.971 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.032 3.968 14 N -0.504 5.504 15 C 0.034 3.966 16 C -0.135 4.135 17 C -0.122 4.122 18 C 0.073 3.927 19 H 0.046 0.954 20 C -0.051 4.051 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.133 4.133 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.014 0.986 28 H 0.012 0.988 29 H 0.259 0.741 30 H 0.091 0.909 31 H 0.023 0.977 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 2.252 -18.304 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.082 0.918 4 C -0.008 4.008 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.095 4.095 14 N -0.228 5.228 15 C -0.094 4.094 16 C -0.174 4.174 17 C -0.160 4.160 18 C -0.035 4.035 19 H 0.064 0.936 20 C -0.052 4.052 21 C -0.206 4.206 22 C -0.198 4.198 23 C -0.191 4.191 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.123 2.643 -18.060 18.253 hybrid contribution -0.645 -0.546 0.899 1.234 sum -0.769 2.097 -17.161 17.306 Atomic orbital electron populations 1.22232 0.96996 0.99524 1.01820 1.21147 0.94801 0.99890 0.93958 0.91813 1.19087 0.95975 0.95319 0.90424 1.21205 1.34563 1.08197 0.91011 0.92661 1.25014 0.95377 0.95081 0.99032 1.69959 1.39113 1.21252 1.23409 0.86706 0.78840 0.80172 0.82561 1.20348 1.21399 1.20286 1.22984 1.02442 0.93923 0.90171 1.64707 1.07957 1.48252 1.01898 1.23242 0.90067 1.01743 0.94359 1.22475 0.97195 1.01532 0.96148 1.22616 0.94714 1.01586 0.97034 1.22769 0.93963 0.96233 0.90545 0.93583 1.20350 0.93476 0.96383 0.94945 1.22161 0.98970 1.00989 0.98443 1.21892 1.00579 1.00385 0.96965 1.21832 1.00137 0.94342 1.02742 0.91947 0.93429 0.94622 0.96787 0.96963 0.93097 0.89071 0.95857 0.93444 0.89783 0.92209 0.91524 0.91880 0.90258 0.92936 0.93234 0.90617 0.92803 0.92718 0.93070 0.90940 0.93804 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 7.69 37.15 0.29 -2.59 16 2 C -0.08 -1.65 2.49 -90.62 -0.23 -1.87 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.77 4.44 -27.88 -0.12 0.64 16 5 C -0.51 -14.47 8.20 -34.44 -0.28 -14.75 16 6 H 0.06 1.53 7.17 -52.49 -0.38 1.15 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.03 0.57 4.02 -3.83 -0.02 0.55 16 14 N -0.50 -7.61 4.19 -222.63 -0.93 -8.54 16 15 C 0.03 0.47 4.78 -2.75 -0.01 0.46 16 16 C -0.14 -1.53 6.93 -25.38 -0.18 -1.71 16 17 C -0.12 -1.34 5.46 -24.87 -0.14 -1.47 16 18 C 0.07 0.95 1.74 -65.79 -0.11 0.83 16 19 H 0.05 0.64 8.02 -51.93 -0.42 0.22 16 20 C -0.05 -0.61 0.65 -154.51 -0.10 -0.71 16 21 C -0.15 -1.98 6.90 37.16 0.26 -1.72 16 22 C -0.14 -1.41 8.25 37.16 0.31 -1.10 16 23 C -0.13 -1.59 7.92 37.16 0.29 -1.29 16 24 H 0.06 1.33 6.67 -51.92 -0.35 0.98 16 25 H 0.05 0.80 4.76 -51.93 -0.25 0.55 16 26 H 0.03 0.66 7.26 -51.93 -0.38 0.29 16 27 H 0.01 0.38 8.13 -51.93 -0.42 -0.04 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.63 3.72 -51.93 -0.19 1.44 16 31 H 0.02 0.43 7.77 -51.93 -0.40 0.03 16 32 H 0.05 0.71 6.11 -51.92 -0.32 0.39 16 33 H 0.08 1.21 6.11 -51.93 -0.32 0.89 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.61 8.03 -51.93 -0.42 0.20 16 37 H 0.08 0.86 5.68 -51.92 -0.29 0.56 16 38 H 0.05 0.72 7.52 -51.93 -0.39 0.33 16 39 H 0.05 0.59 8.06 -51.93 -0.42 0.18 16 40 H 0.08 1.16 6.24 -51.93 -0.32 0.84 16 41 H 0.05 0.49 7.34 -51.93 -0.38 0.11 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 1.01 7.62 -51.93 -0.40 0.61 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.55 6.03 -51.93 -0.31 0.24 16 LS Contribution 330.79 15.07 4.99 4.99 Total: -1.00 -29.18 330.79 -8.82 -38.00 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.45 Total: -1.62 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -0.14 Total: -23.23 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.20 Total: -35.03 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.18 -8.82 -38.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602460334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.202 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds