Wall clock time and date at job start Sun Mar 29 2020 23:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 C 1.53005 * 109.47186 * 119.99949 * 2 1 3 5 5 H 1.09004 * 109.44897 * 55.92358 * 4 2 1 6 6 C 1.53032 * 109.46267 * 295.94985 * 4 2 1 7 7 C 1.53119 * 109.28025 * 180.80268 * 6 4 2 8 8 C 1.53124 * 109.15559 * 57.65154 * 7 6 4 9 9 C 1.53037 * 109.28094 * 302.34681 * 8 7 6 10 10 N 1.46841 * 109.52140 * 59.18436 * 9 8 7 11 11 C 1.46898 * 110.99768 * 174.16235 * 10 9 8 12 12 C 1.53003 * 109.47586 * 59.40443 * 11 10 9 13 13 H 1.09002 * 109.46829 * 323.55464 * 12 11 10 14 14 C 1.52999 * 109.46986 * 83.55284 * 12 11 10 15 15 C 1.52994 * 109.47230 * 203.55498 * 12 11 10 16 16 C 1.50702 * 109.47113 * 174.99903 * 15 12 11 17 17 H 1.07998 * 119.99814 * 0.02562 * 16 15 12 18 18 C 1.37881 * 120.00051 * 180.27384 * 16 15 12 19 19 N 1.31515 * 119.99748 * 359.72421 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 179.72457 * 18 16 15 21 21 H 1.48497 * 109.47249 * 59.99906 * 20 18 16 22 22 H 1.48504 * 109.47099 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47075 * 299.99945 * 20 18 16 24 24 H 1.08992 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46379 * 300.00042 * 1 2 3 26 26 H 1.08998 * 109.47191 * 59.99742 * 1 2 3 27 27 H 1.08998 * 109.47217 * 240.00177 * 2 1 3 28 28 H 1.09004 * 109.47444 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47296 * 300.00194 * 3 2 1 30 30 H 1.09007 * 109.47523 * 60.00124 * 3 2 1 31 31 H 1.08997 * 109.50569 * 60.86032 * 6 4 2 32 32 H 1.09003 * 109.53397 * 300.76192 * 6 4 2 33 33 H 1.08996 * 109.52035 * 297.75310 * 7 6 4 34 34 H 1.09000 * 109.57795 * 177.58549 * 7 6 4 35 35 H 1.09007 * 109.49880 * 182.40663 * 8 7 6 36 36 H 1.08997 * 109.53646 * 62.31394 * 8 7 6 37 37 H 1.09000 * 109.46291 * 299.16251 * 9 8 7 38 38 H 1.09003 * 109.45153 * 179.19389 * 9 8 7 39 39 H 1.08996 * 109.47425 * 299.39911 * 11 10 9 40 40 H 1.09006 * 109.47373 * 179.40676 * 11 10 9 41 41 H 1.09001 * 109.47353 * 273.21813 * 14 12 11 42 42 H 1.08999 * 109.47362 * 33.21748 * 14 12 11 43 43 H 1.09001 * 109.46868 * 153.22151 * 14 12 11 44 44 H 1.08995 * 109.47342 * 54.99304 * 15 12 11 45 45 H 1.09005 * 109.46791 * 294.99556 * 15 12 11 46 46 H 0.97003 * 120.00052 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.6181 -1.7256 1.2862 6 6 1.6148 0.0567 2.4966 7 6 2.1443 -0.6577 3.7431 8 6 3.6677 -0.7775 3.6445 9 6 4.0334 -1.5314 2.3639 10 7 3.5052 -0.8075 1.2005 11 6 3.9546 -1.4270 -0.0534 12 6 3.4759 -2.8793 -0.1051 13 1 3.5179 -3.3115 0.8946 14 6 2.0357 -2.9234 -0.6198 15 6 4.3784 -3.6805 -1.0455 16 6 3.9840 -5.1344 -1.0024 17 1 3.1708 -5.4547 -0.3680 18 6 4.6648 -6.0564 -1.7689 19 7 5.6548 -5.6662 -2.5417 20 14 4.1810 -7.8597 -1.7095 21 1 2.7680 -8.0075 -2.1414 22 1 5.0601 -8.6382 -2.6187 23 1 4.3301 -8.3667 -0.3219 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 0.5269 0.1072 2.5407 32 1 2.0245 1.0659 2.4539 33 1 1.7041 -1.6527 3.8071 34 1 1.8808 -0.0847 4.6321 35 1 4.0464 -1.3232 4.5088 36 1 4.1108 0.2180 3.6199 37 1 3.6022 -2.5319 2.3957 38 1 5.1179 -1.6057 2.2836 39 1 5.0432 -1.4013 -0.1016 40 1 3.5406 -0.8776 -0.8989 41 1 1.3473 -2.7965 0.2157 42 1 1.8830 -2.1210 -1.3415 43 1 1.8509 -3.8843 -1.1002 44 1 5.4163 -3.5760 -0.7296 45 1 4.2685 -3.3043 -2.0626 46 1 6.1336 -6.3148 -3.0813 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602471514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:03 Heat of formation + Delta-G solvation = -21.926351 kcal Electronic energy + Delta-G solvation = -20606.486442 eV Core-core repulsion = 17916.035773 eV Total energy + Delta-G solvation = -2690.450670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.96594 -35.51487 -34.95493 -32.89564 -31.25274 -29.32971 -27.24447 -26.81876 -26.14554 -23.83849 -23.26103 -21.84401 -20.26968 -19.59779 -17.98022 -16.46275 -15.75722 -15.10132 -15.02911 -14.45094 -14.28916 -13.91683 -13.55702 -13.25064 -12.87578 -12.69025 -12.42189 -12.30486 -12.15381 -11.82252 -11.66866 -11.52112 -11.16437 -11.00819 -10.94204 -10.82790 -10.71176 -10.62762 -10.45264 -10.25070 -10.13734 -9.91318 -9.86490 -9.40044 -9.25438 -9.03865 -8.32539 -7.61433 -5.97352 -3.98923 3.33092 3.37823 3.40068 4.29049 4.47241 4.86685 4.92627 5.04588 5.18984 5.30120 5.37687 5.38923 5.47388 5.58686 5.69843 5.77527 5.79058 5.83775 5.86447 5.88966 5.99574 6.02469 6.06237 6.10857 6.14562 6.19216 6.22781 6.29535 6.36102 6.41014 6.47397 6.50959 6.55944 6.65645 6.68917 6.98981 7.13015 7.22026 7.58299 7.59480 7.70636 7.87004 8.02456 8.46548 9.07240 9.64316 11.13633 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.005614 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.035503 B = 4986.410258 C = 5333.909160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.139 4.139 4 C 0.082 3.918 5 H 0.056 0.944 6 C -0.114 4.114 7 C -0.121 4.121 8 C -0.114 4.114 9 C 0.051 3.949 10 N -0.529 5.529 11 C 0.052 3.948 12 C -0.122 4.122 13 H 0.059 0.941 14 C -0.144 4.144 15 C 0.032 3.968 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.882 12.654 9.067 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.027 4.027 5 H 0.074 0.926 6 C -0.152 4.152 7 C -0.159 4.159 8 C -0.152 4.152 9 C -0.077 4.077 10 N -0.253 5.253 11 C -0.075 4.075 12 C -0.142 4.142 13 H 0.077 0.923 14 C -0.201 4.201 15 C -0.006 4.006 16 C -0.553 4.553 17 H 0.071 0.929 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.031 0.969 45 H 0.033 0.967 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.555 13.080 8.962 17.564 hybrid contribution -0.480 -1.997 -0.078 2.056 sum -8.035 11.083 8.884 16.320 Atomic orbital electron populations 1.21870 0.95726 1.01581 1.01269 1.21395 0.94919 0.96871 0.98737 1.21785 1.02094 0.95407 1.00306 1.21837 0.88353 0.98268 0.94199 0.92637 1.21740 0.99637 0.99952 0.93860 1.21580 0.96183 1.00381 0.97738 1.21573 0.95733 1.00965 0.96955 1.22078 0.99999 0.95588 0.90012 1.62220 1.08927 1.51752 1.02367 1.22526 1.00210 0.93719 0.91066 1.21842 0.96322 0.95226 1.00778 0.92252 1.22216 0.96201 1.02231 0.99443 1.19089 0.93801 0.93809 0.93865 1.21205 1.16418 0.92833 1.24830 0.92888 1.25011 0.95144 0.98696 0.95579 1.69954 1.21783 1.34297 1.27492 0.86721 0.78382 0.85424 0.77846 1.20338 1.21314 1.20356 0.92812 0.92855 0.92953 0.89675 0.91634 0.93958 0.93102 0.92087 0.91148 0.92525 0.92481 0.92159 0.91584 0.94117 0.90986 0.91239 0.90904 0.94384 0.93664 0.91552 0.96858 0.96685 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.93 37.16 0.33 -1.32 16 2 C -0.10 -1.29 1.73 -90.62 -0.16 -1.45 16 3 C -0.14 -1.64 8.61 37.16 0.32 -1.32 16 4 C 0.08 1.11 0.94 -67.72 -0.06 1.05 16 5 H 0.06 0.86 4.88 -51.93 -0.25 0.61 16 6 C -0.11 -1.34 4.65 -26.65 -0.12 -1.46 16 7 C -0.12 -1.38 6.00 -26.61 -0.16 -1.54 16 8 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 9 C 0.05 0.75 4.97 -3.84 -0.02 0.74 16 10 N -0.53 -7.94 4.11 -226.69 -0.93 -8.87 16 11 C 0.05 0.90 4.92 -3.82 -0.02 0.89 16 12 C -0.12 -2.46 1.99 -90.62 -0.18 -2.64 16 13 H 0.06 1.25 5.61 -51.93 -0.29 0.96 16 14 C -0.14 -2.70 7.80 37.16 0.29 -2.41 16 15 C 0.03 0.81 4.36 -27.89 -0.12 0.69 16 16 C -0.51 -14.43 8.05 -34.44 -0.28 -14.71 16 17 H 0.05 1.46 7.36 -52.49 -0.39 1.07 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.54 6.55 -51.93 -0.34 0.20 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.24 3.67 -51.93 -0.19 1.05 16 28 H 0.06 0.86 7.73 -51.93 -0.40 0.45 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.56 6.34 -51.93 -0.33 0.23 16 31 H 0.06 0.66 6.58 -51.93 -0.34 0.31 16 32 H 0.07 0.83 6.32 -51.93 -0.33 0.50 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.67 6.17 -51.93 -0.32 0.35 16 38 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 39 H 0.07 1.27 7.84 -51.93 -0.41 0.87 16 40 H 0.07 1.24 5.52 -51.93 -0.29 0.95 16 41 H 0.04 0.64 5.59 -51.93 -0.29 0.35 16 42 H 0.04 0.79 5.53 -51.93 -0.29 0.50 16 43 H 0.07 1.41 6.65 -51.93 -0.35 1.07 16 44 H 0.01 0.36 8.01 -51.93 -0.42 -0.06 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 324.71 15.07 4.89 4.89 Total: -1.00 -28.75 324.71 -8.92 -37.66 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.15 Total: -0.69 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -0.44 Total: -23.51 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.19 Total: -35.15 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.75 -8.92 -37.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602471514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.739 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds