Wall clock time and date at job start Sun Mar 29 2020 22:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46934 * 2 1 4 4 C 1.52997 * 109.47034 * 120.00047 * 2 1 3 5 5 C 1.53117 * 109.52353 * 60.00047 * 4 2 1 6 6 C 1.53044 * 109.27792 * 177.62341 * 5 4 2 7 7 N 1.46847 * 109.51335 * 300.82256 * 6 5 4 8 8 C 1.46901 * 111.00144 * 185.83239 * 7 6 5 9 9 C 1.53000 * 109.47158 * 170.00079 * 8 7 6 10 10 H 1.09000 * 109.47115 * 55.00274 * 9 8 7 11 11 C 1.53006 * 109.47056 * 295.00201 * 9 8 7 12 12 C 1.53001 * 109.46963 * 175.00160 * 9 8 7 13 13 C 1.50705 * 109.47034 * 185.00000 * 12 9 8 14 14 H 1.07999 * 119.99727 * 0.02562 * 13 12 9 15 15 C 1.37877 * 120.00127 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99772 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00079 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47489 * 89.99795 * 17 15 13 19 19 H 1.48506 * 109.47207 * 209.99927 * 17 15 13 20 20 H 1.48500 * 109.47251 * 329.99881 * 17 15 13 21 21 C 1.46830 * 111.21086 * 61.74856 * 7 6 5 22 22 C 1.53038 * 109.51757 * 298.25173 * 21 7 6 23 23 H 1.09002 * 109.46957 * 299.99990 * 1 2 3 24 24 H 1.08997 * 109.47311 * 60.00052 * 1 2 3 25 25 H 1.09006 * 109.47208 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46957 * 240.00010 * 2 1 3 27 27 H 1.09000 * 109.46825 * 299.99646 * 3 2 1 28 28 H 1.08992 * 109.47288 * 60.00194 * 3 2 1 29 29 H 1.08999 * 109.46834 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.52727 * 299.86988 * 4 2 1 31 31 H 1.09001 * 109.50874 * 57.68521 * 5 4 2 32 32 H 1.09002 * 109.53469 * 297.57642 * 5 4 2 33 33 H 1.09002 * 109.46396 * 60.83566 * 6 5 4 34 34 H 1.08994 * 109.46485 * 180.81491 * 6 5 4 35 35 H 1.09001 * 109.46985 * 290.00439 * 8 7 6 36 36 H 1.09002 * 109.46593 * 50.00429 * 8 7 6 37 37 H 1.08997 * 109.46699 * 60.00228 * 11 9 8 38 38 H 1.09003 * 109.46767 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47218 * 300.00010 * 11 9 8 40 40 H 1.08999 * 109.47350 * 305.00072 * 12 9 8 41 41 H 1.09001 * 109.46935 * 65.00446 * 12 9 8 42 42 H 0.96995 * 120.00196 * 180.02562 * 16 15 13 43 43 H 1.08995 * 109.46742 * 178.23410 * 21 7 6 44 44 H 1.09004 * 109.45381 * 58.25744 * 21 7 6 45 45 H 1.08997 * 109.50308 * 299.23764 * 22 21 7 46 46 H 1.08996 * 109.53785 * 179.13596 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5303 -2.1651 1.2504 6 6 2.0918 -2.8982 2.4709 7 7 3.5594 -2.8781 2.4228 8 6 4.1327 -3.6905 3.5041 9 6 5.6374 -3.8510 3.2786 10 1 6.0975 -2.8674 3.1832 11 6 5.8785 -4.6531 1.9982 12 6 6.2554 -4.5899 4.4673 13 6 7.7527 -4.6401 4.3043 14 1 8.2171 -4.1896 3.4396 15 6 8.5297 -5.2611 5.2591 16 7 7.9641 -5.8091 6.3124 17 14 10.3857 -5.3227 5.0575 18 1 10.9931 -4.1282 5.6974 19 1 10.9132 -6.5519 5.7025 20 1 10.7263 -5.3369 3.6121 21 6 4.0736 -1.5036 2.4685 22 6 3.5712 -0.7289 1.2480 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6791 -0.2068 2.1398 31 1 1.8590 -2.6679 0.3409 32 1 0.4411 -2.1671 1.2941 33 1 1.7514 -2.4031 3.3803 34 1 1.7424 -3.9306 2.4669 35 1 3.9592 -3.1970 4.4604 36 1 3.6595 -4.6724 3.5108 37 1 5.4383 -4.1267 1.1514 38 1 6.9506 -4.7671 1.8373 39 1 5.4185 -5.6367 2.0936 40 1 6.0077 -4.0650 5.3900 41 1 5.8602 -5.6049 4.5094 42 1 8.5107 -6.2457 6.9843 43 1 5.1634 -1.5231 2.4629 44 1 3.7238 -1.0151 3.3780 45 1 3.9320 -1.2090 0.3384 46 1 3.9403 0.2959 1.2895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602478234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:34 Heat of formation + Delta-G solvation = -56.335975 kcal Electronic energy + Delta-G solvation = -19539.155988 eV Core-core repulsion = 16847.213205 eV Total energy + Delta-G solvation = -2691.942783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48188 -37.98630 -36.03081 -34.22017 -31.98837 -31.79216 -28.85559 -27.98397 -27.23563 -25.38226 -23.84010 -23.65077 -21.17143 -20.51027 -20.38586 -18.52719 -17.06466 -16.47094 -16.18722 -15.75417 -15.33062 -15.09707 -15.02550 -14.83159 -14.43299 -14.14568 -14.01013 -13.51450 -13.28692 -13.22818 -12.99216 -12.80761 -12.68654 -12.54998 -12.35421 -12.24719 -12.16673 -12.01642 -11.96893 -11.74260 -11.45124 -11.29566 -11.12707 -11.06144 -10.86243 -10.68941 -10.52786 -9.18102 -8.17531 -6.26802 1.39901 1.41085 1.52292 2.41981 3.01368 3.15753 3.79482 3.81699 3.91187 4.07814 4.25137 4.28857 4.35731 4.44123 4.52010 4.53760 4.62429 4.64970 4.68045 4.80025 4.84856 4.87829 4.94108 4.96267 5.04905 5.05370 5.11781 5.14134 5.15507 5.18374 5.25052 5.29073 5.39631 5.44856 5.48833 5.50307 5.55815 5.56310 5.67096 5.80930 5.88792 6.16467 6.29443 6.33731 6.89015 7.41442 8.94701 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.043099 B = 0.003812 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.512514 B = 7343.413326 C = 7655.360817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.079 4.079 5 C -0.103 4.103 6 C 0.051 3.949 7 N -0.534 5.534 8 C 0.072 3.928 9 C -0.072 4.072 10 H 0.053 0.947 11 C -0.110 4.110 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.962 3.038 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.050 3.950 22 C -0.103 4.103 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.014 0.986 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.036 0.964 40 H -0.017 1.017 41 H -0.010 1.010 42 H 0.262 0.738 43 H 0.065 0.935 44 H 0.021 0.979 45 H 0.066 0.934 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 12.131 -13.087 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.098 4.098 5 C -0.141 4.141 6 C -0.076 4.076 7 N -0.259 5.259 8 C -0.056 4.056 9 C -0.091 4.091 10 H 0.071 0.929 11 C -0.167 4.167 12 C -0.004 4.004 13 C -0.566 4.566 14 H 0.079 0.921 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.187 1.187 21 C -0.077 4.077 22 C -0.141 4.141 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.033 0.967 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.001 0.999 41 H 0.008 0.992 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.543 11.836 -13.389 23.040 hybrid contribution 0.852 -0.072 1.470 1.700 sum -13.692 11.764 -11.919 21.631 Atomic orbital electron populations 1.21876 0.94701 1.02051 1.01790 1.21088 0.96113 0.96098 0.97241 1.21885 1.01191 0.95725 1.01791 1.21219 0.94654 0.95584 0.98301 1.21642 1.00237 0.94784 0.97392 1.22174 0.86861 1.00795 0.97804 1.61946 1.07035 1.11433 1.45488 1.22024 0.95379 0.97059 0.91121 1.21031 0.93232 0.98626 0.96163 0.92898 1.21447 0.99997 0.98608 0.96675 1.19010 0.94832 0.93924 0.92657 1.21630 0.93218 1.35193 1.06591 0.92143 1.25963 1.03854 0.95196 0.94986 1.70104 1.37303 1.38630 1.11662 0.85495 0.79523 0.77606 0.78734 1.19891 1.20870 1.18693 1.22161 0.99866 0.88088 0.97624 1.21636 0.95731 0.99469 0.97252 0.92885 0.92264 0.92200 0.91374 0.92198 0.92902 0.92586 0.92061 0.91493 0.89963 0.95742 0.90890 0.96743 0.91515 0.91692 0.94436 0.94529 0.99878 0.99164 0.92935 0.91691 0.96041 0.91572 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.84 71.98 0.64 -1.28 16 2 C -0.09 -1.31 2.51 -10.79 -0.03 -1.34 16 3 C -0.15 -2.09 8.85 71.98 0.64 -1.45 16 4 C -0.08 -1.46 1.84 -10.71 -0.02 -1.48 16 5 C -0.10 -1.99 4.95 30.65 0.15 -1.84 16 6 C 0.05 1.27 5.46 86.33 0.47 1.74 16 7 N -0.53 -15.99 4.11 -896.39 -3.68 -19.68 16 8 C 0.07 2.63 4.35 86.30 0.38 3.00 16 9 C -0.07 -3.05 2.26 -10.79 -0.02 -3.08 16 10 H 0.05 2.28 6.22 -2.39 -0.01 2.27 16 11 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 12 C 0.03 1.80 4.45 29.85 0.13 1.94 16 13 C -0.53 -30.48 8.41 25.60 0.22 -30.26 16 14 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 15 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 16 N -0.94 -58.10 13.29 21.45 0.28 -57.82 16 17 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 21 C 0.05 1.42 5.29 86.33 0.46 1.87 16 22 C -0.10 -2.23 4.96 30.65 0.15 -2.08 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.76 6.49 -2.38 -0.02 0.74 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.82 6.50 -2.39 -0.02 0.80 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.31 6.57 -2.39 -0.02 1.30 16 33 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 1.77 8.01 -2.39 -0.02 1.75 16 35 H 0.01 0.55 8.12 -2.39 -0.02 0.53 16 36 H 0.07 2.42 7.99 -2.39 -0.02 2.41 16 37 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 38 H 0.04 1.57 6.95 -2.39 -0.02 1.56 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.06 2.03 6.12 -2.39 -0.01 2.02 16 44 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.47 6.58 -2.39 -0.02 1.46 16 Total: -1.00 -63.17 343.30 3.78 -59.39 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.89 Total: 8.67 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 4.26 Total: -37.68 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -3.40 Total: -77.49 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -63.17 3.78 -59.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602478234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.050 kcal (2) G-P(sol) polarization free energy of solvation -63.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds