Wall clock time and date at job start Sun Mar 29 2020 22:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47349 * 2 1 4 4 C 1.53006 * 109.47375 * 120.00277 * 2 1 3 5 5 C 1.50700 * 109.46639 * 294.99922 * 4 2 1 6 6 H 1.07992 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99631 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00103 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99782 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47292 * 90.00455 * 9 7 5 11 11 H 1.48508 * 109.47062 * 210.00411 * 9 7 5 12 12 H 1.48499 * 109.47421 * 330.00412 * 9 7 5 13 13 C 1.53009 * 109.46971 * 240.00126 * 2 1 3 14 14 N 1.46897 * 109.47122 * 63.82611 * 13 2 1 15 15 C 1.47636 * 110.99897 * 205.23210 * 14 13 2 16 16 C 1.50809 * 108.05481 * 150.34596 * 15 14 13 17 17 C 1.53830 * 111.62349 * 95.05395 * 16 15 14 18 18 C 1.54166 * 111.96582 * 319.04532 * 17 16 15 19 19 C 1.53001 * 108.85056 * 197.68174 * 18 17 16 20 20 C 1.52994 * 108.85781 * 79.29785 * 18 17 16 21 21 C 1.50753 * 112.61189 * 318.48198 * 18 17 16 22 22 C 1.39768 * 111.00190 * 76.33643 * 14 13 2 23 23 H 1.09002 * 109.47329 * 184.99381 * 1 2 3 24 24 H 1.08996 * 109.47088 * 304.99520 * 1 2 3 25 25 H 1.09004 * 109.47172 * 64.99638 * 1 2 3 26 26 H 1.08997 * 109.46629 * 54.99749 * 4 2 1 27 27 H 1.09000 * 109.47246 * 174.99763 * 4 2 1 28 28 H 0.96999 * 120.00569 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46833 * 183.82572 * 13 2 1 30 30 H 1.08998 * 109.46990 * 303.82223 * 13 2 1 31 31 H 1.09004 * 109.74223 * 269.98497 * 15 14 13 32 32 H 1.08997 * 109.74652 * 30.70217 * 15 14 13 33 33 H 1.09006 * 109.05059 * 334.50321 * 16 15 14 34 34 H 1.09005 * 108.99709 * 215.56840 * 16 15 14 35 35 H 1.09001 * 108.97838 * 198.39911 * 17 16 15 36 36 H 1.08997 * 108.90916 * 79.64182 * 17 16 15 37 37 H 1.09001 * 109.47447 * 183.08789 * 19 18 17 38 38 H 1.09006 * 109.47097 * 303.08696 * 19 18 17 39 39 H 1.09002 * 109.47573 * 63.08632 * 19 18 17 40 40 H 1.08998 * 109.47051 * 280.12012 * 20 18 17 41 41 H 1.09007 * 109.47295 * 40.11934 * 20 18 17 42 42 H 1.09005 * 109.47444 * 160.12318 * 20 18 17 43 43 H 1.08997 * 109.54645 * 333.16361 * 21 18 17 44 44 H 1.08995 * 109.54734 * 212.88286 * 21 18 17 45 45 H 1.09004 * 109.02461 * 309.72051 * 22 14 13 46 46 H 1.09004 * 109.02140 * 68.61617 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9924 -0.4023 3.7283 8 7 2.6756 -1.5193 3.8511 9 14 1.4989 0.5628 5.2496 10 1 0.1713 0.0955 5.7232 11 1 2.5081 0.3520 6.3185 12 1 1.4250 2.0081 4.9166 13 6 2.0400 -0.7213 -1.2493 14 7 1.6272 0.0225 -2.4469 15 6 1.5460 -0.8685 -3.6213 16 6 0.4917 -0.3219 -4.5507 17 6 1.1060 0.5712 -5.6422 18 6 2.2179 1.4817 -5.0842 19 6 2.4688 2.6198 -6.0754 20 6 3.5022 0.6627 -4.9407 21 6 1.8645 2.0727 -3.7431 22 6 2.4197 1.1594 -2.6284 23 1 -0.3634 -1.0238 0.0895 24 1 -0.3633 0.5894 0.8418 25 1 -0.3634 0.4344 -0.9314 26 1 1.6054 -1.7198 1.2951 27 1 3.1264 -0.7996 1.2055 28 1 2.9229 -1.8423 4.7317 29 1 3.1278 -0.7810 -1.2157 30 1 1.6217 -1.7272 -1.2842 31 1 2.5091 -0.8941 -4.1313 32 1 1.2706 -1.8738 -3.3025 33 1 -0.2233 0.2637 -3.9726 34 1 -0.0302 -1.1538 -5.0238 35 1 0.3219 1.1930 -6.0744 36 1 1.5256 -0.0632 -6.4229 37 1 3.2911 3.2391 -5.7171 38 1 2.7254 2.2033 -7.0495 39 1 1.5687 3.2280 -6.1660 40 1 3.4549 0.0700 -4.0272 41 1 3.6079 -0.0007 -5.7992 42 1 4.3587 1.3352 -4.8935 43 1 0.7808 2.1439 -3.6501 44 1 2.3055 3.0655 -3.6545 45 1 2.4555 1.7204 -1.6945 46 1 3.4301 0.8493 -2.8951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602478382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:49 Heat of formation + Delta-G solvation = 3.343308 kcal Electronic energy + Delta-G solvation = -20119.963745 eV Core-core repulsion = 17430.608850 eV Total energy + Delta-G solvation = -2689.354895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45458 -36.62017 -34.13660 -32.56565 -31.85921 -28.80987 -27.90679 -26.78578 -26.12397 -24.67132 -23.28049 -22.21785 -20.09287 -18.94472 -18.06918 -16.45271 -16.09691 -15.43056 -15.19173 -14.65420 -14.43920 -13.85872 -13.70019 -13.24260 -12.93138 -12.78075 -12.54973 -12.23904 -12.16415 -11.76795 -11.57047 -11.38532 -11.30580 -11.15283 -10.87556 -10.78328 -10.67626 -10.47513 -10.36274 -10.23769 -10.22162 -10.14402 -9.93979 -9.50387 -9.03928 -8.89660 -8.28632 -7.60114 -5.93647 -3.94330 3.35611 3.41730 3.45270 4.25524 4.52189 4.66531 4.71927 4.77032 5.10654 5.24476 5.31051 5.40845 5.42188 5.48731 5.50277 5.58844 5.66462 5.71188 5.74957 5.84371 5.89607 5.93123 6.02628 6.06328 6.07906 6.18282 6.22018 6.25368 6.32413 6.34787 6.47783 6.49111 6.55519 6.66491 6.81796 7.11079 7.25885 7.30334 7.59865 7.74710 7.83795 7.93651 8.07379 8.52203 9.12323 9.68870 11.17967 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.039807 B = 0.004282 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.218210 B = 6537.971792 C = 6666.283957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.549 5.549 15 C 0.040 3.960 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.063 4.063 19 C -0.141 4.141 20 C -0.174 4.174 21 C -0.106 4.106 22 C 0.058 3.942 23 H 0.037 0.963 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.259 0.741 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 4.325 -19.646 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.061 4.061 14 N -0.273 5.273 15 C -0.087 4.087 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.063 4.063 19 C -0.198 4.198 20 C -0.230 4.230 21 C -0.144 4.144 22 C -0.071 4.071 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.434 4.385 -19.468 20.007 hybrid contribution 0.573 0.184 0.786 0.990 sum -0.860 4.569 -18.682 19.252 Atomic orbital electron populations 1.21550 0.95910 1.00436 0.99873 1.21196 0.95860 0.98998 0.93748 0.92777 1.19137 0.95834 0.95517 0.90610 1.21246 1.34382 1.08213 0.90999 0.92626 1.25014 0.95377 0.95107 0.99052 1.69964 1.39221 1.21330 1.23286 0.86647 0.78199 0.80468 0.83009 1.20746 1.21355 1.19925 1.22319 0.97312 0.96911 0.89564 1.58819 1.56512 1.08085 1.03926 1.22284 0.99366 0.95523 0.91500 1.21386 0.98665 0.98868 0.96394 1.22018 0.97244 0.97318 0.97646 1.20336 0.95322 0.95076 0.95600 1.21997 1.01257 0.97805 0.98756 1.22860 0.96893 1.00329 1.02877 1.21533 1.02057 0.97892 0.92912 1.21212 0.94707 0.92208 0.99001 0.94368 0.93236 0.93747 0.96695 0.97049 0.93162 0.95381 0.91639 0.92027 0.91531 0.90640 0.92567 0.92519 0.92720 0.92808 0.93167 0.92865 0.89110 0.93302 0.93094 0.90906 0.91863 0.90848 0.94856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.86 37.16 0.33 -2.06 16 2 C -0.08 -1.64 2.37 -90.61 -0.21 -1.86 16 3 H 0.05 1.15 6.65 -51.93 -0.35 0.81 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.47 8.47 -34.44 -0.29 -14.76 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 13 C 0.07 1.15 4.44 -3.82 -0.02 1.13 16 14 N -0.55 -8.04 3.19 -240.00 -0.77 -8.81 16 15 C 0.04 0.49 5.30 -4.52 -0.02 0.47 16 16 C -0.12 -1.28 5.41 -27.40 -0.15 -1.42 16 17 C -0.10 -1.03 4.90 -25.69 -0.13 -1.16 16 18 C -0.06 -0.64 0.72 -155.03 -0.11 -0.76 16 19 C -0.14 -1.26 7.96 37.16 0.30 -0.96 16 20 C -0.17 -1.81 6.47 37.15 0.24 -1.57 16 21 C -0.11 -1.24 5.03 -27.10 -0.14 -1.37 16 22 C 0.06 0.80 4.66 -6.75 -0.03 0.77 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 1.04 7.10 -51.93 -0.37 0.67 16 25 H 0.04 0.79 7.58 -51.93 -0.39 0.40 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.50 7.97 -51.93 -0.41 0.09 16 30 H 0.07 1.14 7.40 -51.93 -0.38 0.76 16 31 H 0.06 0.73 4.00 -51.93 -0.21 0.52 16 32 H 0.07 0.84 7.38 -51.93 -0.38 0.46 16 33 H 0.07 0.95 7.26 -51.93 -0.38 0.57 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.53 7.99 -51.93 -0.41 0.12 16 36 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.05 0.47 8.02 -51.93 -0.42 0.05 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 1.07 2.68 -51.93 -0.14 0.93 16 41 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 42 H 0.05 0.52 7.94 -51.93 -0.41 0.10 16 43 H 0.07 0.91 7.11 -51.93 -0.37 0.54 16 44 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 45 H 0.07 1.15 6.42 -51.93 -0.33 0.81 16 46 H 0.03 0.46 4.96 -51.93 -0.26 0.20 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -29.12 329.52 -9.00 -38.12 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -8.45 Total: -3.16 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -0.46 Total: -21.49 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.03 Total: -35.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.12 -9.00 -38.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602478382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.461 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds