Wall clock time and date at job start Sun Mar 29 2020 22:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47349 * 2 1 4 4 C 1.53006 * 109.47375 * 120.00277 * 2 1 3 5 5 C 1.50700 * 109.46639 * 294.99922 * 4 2 1 6 6 H 1.07992 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99631 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00103 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99782 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47292 * 90.00455 * 9 7 5 11 11 H 1.48508 * 109.47062 * 210.00411 * 9 7 5 12 12 H 1.48499 * 109.47421 * 330.00412 * 9 7 5 13 13 C 1.53009 * 109.46971 * 240.00126 * 2 1 3 14 14 N 1.46897 * 109.47122 * 63.82611 * 13 2 1 15 15 C 1.47636 * 110.99897 * 205.23210 * 14 13 2 16 16 C 1.50809 * 108.05481 * 150.34596 * 15 14 13 17 17 C 1.53830 * 111.62349 * 95.05395 * 16 15 14 18 18 C 1.54166 * 111.96582 * 319.04532 * 17 16 15 19 19 C 1.53001 * 108.85056 * 197.68174 * 18 17 16 20 20 C 1.52994 * 108.85781 * 79.29785 * 18 17 16 21 21 C 1.50753 * 112.61189 * 318.48198 * 18 17 16 22 22 C 1.39768 * 111.00190 * 76.33643 * 14 13 2 23 23 H 1.09002 * 109.47329 * 184.99381 * 1 2 3 24 24 H 1.08996 * 109.47088 * 304.99520 * 1 2 3 25 25 H 1.09004 * 109.47172 * 64.99638 * 1 2 3 26 26 H 1.08997 * 109.46629 * 54.99749 * 4 2 1 27 27 H 1.09000 * 109.47246 * 174.99763 * 4 2 1 28 28 H 0.96999 * 120.00569 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46833 * 183.82572 * 13 2 1 30 30 H 1.08998 * 109.46990 * 303.82223 * 13 2 1 31 31 H 1.09004 * 109.74223 * 269.98497 * 15 14 13 32 32 H 1.08997 * 109.74652 * 30.70217 * 15 14 13 33 33 H 1.09006 * 109.05059 * 334.50321 * 16 15 14 34 34 H 1.09005 * 108.99709 * 215.56840 * 16 15 14 35 35 H 1.09001 * 108.97838 * 198.39911 * 17 16 15 36 36 H 1.08997 * 108.90916 * 79.64182 * 17 16 15 37 37 H 1.09001 * 109.47447 * 183.08789 * 19 18 17 38 38 H 1.09006 * 109.47097 * 303.08696 * 19 18 17 39 39 H 1.09002 * 109.47573 * 63.08632 * 19 18 17 40 40 H 1.08998 * 109.47051 * 280.12012 * 20 18 17 41 41 H 1.09007 * 109.47295 * 40.11934 * 20 18 17 42 42 H 1.09005 * 109.47444 * 160.12318 * 20 18 17 43 43 H 1.08997 * 109.54645 * 333.16361 * 21 18 17 44 44 H 1.08995 * 109.54734 * 212.88286 * 21 18 17 45 45 H 1.09004 * 109.02461 * 309.72051 * 22 14 13 46 46 H 1.09004 * 109.02140 * 68.61617 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9924 -0.4023 3.7283 8 7 2.6756 -1.5193 3.8511 9 14 1.4989 0.5628 5.2496 10 1 0.1713 0.0955 5.7232 11 1 2.5081 0.3520 6.3185 12 1 1.4250 2.0081 4.9166 13 6 2.0400 -0.7213 -1.2493 14 7 1.6272 0.0225 -2.4469 15 6 1.5460 -0.8685 -3.6213 16 6 0.4917 -0.3219 -4.5507 17 6 1.1060 0.5712 -5.6422 18 6 2.2179 1.4817 -5.0842 19 6 2.4688 2.6198 -6.0754 20 6 3.5022 0.6627 -4.9407 21 6 1.8645 2.0727 -3.7431 22 6 2.4197 1.1594 -2.6284 23 1 -0.3634 -1.0238 0.0895 24 1 -0.3633 0.5894 0.8418 25 1 -0.3634 0.4344 -0.9314 26 1 1.6054 -1.7198 1.2951 27 1 3.1264 -0.7996 1.2055 28 1 2.9229 -1.8423 4.7317 29 1 3.1278 -0.7810 -1.2157 30 1 1.6217 -1.7272 -1.2842 31 1 2.5091 -0.8941 -4.1313 32 1 1.2706 -1.8738 -3.3025 33 1 -0.2233 0.2637 -3.9726 34 1 -0.0302 -1.1538 -5.0238 35 1 0.3219 1.1930 -6.0744 36 1 1.5256 -0.0632 -6.4229 37 1 3.2911 3.2391 -5.7171 38 1 2.7254 2.2033 -7.0495 39 1 1.5687 3.2280 -6.1660 40 1 3.4549 0.0700 -4.0272 41 1 3.6079 -0.0007 -5.7992 42 1 4.3587 1.3352 -4.8935 43 1 0.7808 2.1439 -3.6501 44 1 2.3055 3.0655 -3.6545 45 1 2.4555 1.7204 -1.6945 46 1 3.4301 0.8493 -2.8951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602478382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:49 Heat of formation + Delta-G solvation = -11.418838 kcal Electronic energy + Delta-G solvation = -20120.603879 eV Core-core repulsion = 17430.608850 eV Total energy + Delta-G solvation = -2689.995030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46855 -37.97280 -35.75470 -34.03417 -33.33573 -29.96069 -28.96103 -28.48850 -27.26594 -26.05986 -24.69822 -23.64550 -21.13118 -20.57915 -18.99221 -18.51731 -17.23562 -16.60140 -16.52121 -16.27250 -15.56999 -15.28415 -14.91885 -14.64605 -14.19794 -13.95722 -13.76636 -13.52441 -13.25602 -13.13548 -12.92920 -12.77752 -12.65590 -12.57262 -12.45180 -12.18735 -12.10524 -11.89746 -11.72910 -11.58901 -11.32750 -11.19398 -11.05360 -11.02917 -10.84162 -10.78588 -10.52209 -8.79248 -8.16714 -6.25802 1.39961 1.41081 1.52042 2.42420 3.08021 3.16522 3.81391 3.89179 3.91990 4.08550 4.24997 4.31192 4.34842 4.42524 4.54138 4.58715 4.63428 4.66228 4.80513 4.81653 4.87048 4.88921 4.95271 5.01171 5.02822 5.08378 5.12975 5.17877 5.23779 5.29820 5.31224 5.37133 5.38271 5.50520 5.51810 5.53551 5.58940 5.61043 5.67537 5.83681 5.90766 6.26138 6.38730 6.69195 6.90124 7.42407 8.95358 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.039807 B = 0.004282 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.218210 B = 6537.971792 C = 6666.283957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 H 0.048 0.952 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.058 0.942 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.077 3.923 14 N -0.548 5.548 15 C 0.038 3.962 16 C -0.111 4.111 17 C -0.101 4.101 18 C -0.063 4.063 19 C -0.137 4.137 20 C -0.171 4.171 21 C -0.098 4.098 22 C 0.056 3.944 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.066 0.934 26 H -0.010 1.010 27 H -0.016 1.016 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 5.369 -21.133 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 H 0.066 0.934 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.189 1.189 13 C -0.050 4.050 14 N -0.273 5.273 15 C -0.088 4.088 16 C -0.149 4.149 17 C -0.139 4.139 18 C -0.063 4.063 19 C -0.195 4.195 20 C -0.227 4.227 21 C -0.136 4.136 22 C -0.073 4.073 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.008 0.992 27 H 0.002 0.998 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.144 5.439 -20.976 21.776 hybrid contribution 0.823 -0.168 1.226 1.486 sum -1.320 5.271 -19.750 20.484 Atomic orbital electron populations 1.21428 0.94810 1.00038 1.00323 1.20996 0.96592 0.98193 0.93078 0.93402 1.19021 0.93938 0.94663 0.92832 1.21628 1.34348 1.08494 0.92139 0.92344 1.25935 0.95236 0.96103 1.02582 1.70098 1.40321 1.22991 1.24246 0.85522 0.78047 0.79273 0.78674 1.19841 1.20839 1.18852 1.22037 0.96559 0.96705 0.89730 1.58798 1.56369 1.08313 1.03781 1.22394 1.00586 0.95000 0.90813 1.21333 0.97876 0.99370 0.96298 1.22002 0.97298 0.97263 0.97323 1.20332 0.95337 0.95623 0.95002 1.21952 1.01535 0.97275 0.98695 1.22802 0.97129 1.00348 1.02438 1.21471 1.01462 0.97718 0.92947 1.21248 0.95196 0.92011 0.98869 0.94780 0.94739 0.91522 0.99171 0.99801 0.92947 0.96314 0.91666 0.91002 0.91809 0.92043 0.91186 0.91677 0.91561 0.92777 0.92218 0.92413 0.90735 0.92209 0.92958 0.91555 0.91174 0.93165 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 8.86 71.98 0.64 -3.67 16 2 C -0.07 -2.96 2.37 -10.79 -0.03 -2.98 16 3 H 0.05 2.09 6.65 -2.39 -0.02 2.07 16 4 C 0.03 1.78 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.56 8.47 25.60 0.22 -30.34 16 6 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 8 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 9 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.08 2.74 4.44 86.31 0.38 3.12 16 14 N -0.55 -15.76 3.19 -913.23 -2.92 -18.68 16 15 C 0.04 0.89 5.30 85.45 0.45 1.34 16 16 C -0.11 -2.21 5.41 30.16 0.16 -2.05 16 17 C -0.10 -1.70 4.90 31.27 0.15 -1.55 16 18 C -0.06 -1.13 0.72 -52.52 -0.04 -1.17 16 19 C -0.14 -2.06 7.96 71.98 0.57 -1.49 16 20 C -0.17 -3.20 6.47 71.98 0.47 -2.74 16 21 C -0.10 -2.14 5.03 30.35 0.15 -1.99 16 22 C 0.06 1.52 4.66 88.08 0.41 1.93 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.03 1.44 7.10 -2.39 -0.02 1.42 16 25 H 0.07 2.33 7.58 -2.38 -0.02 2.31 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.02 0.69 7.97 -2.39 -0.02 0.67 16 30 H 0.06 2.31 7.40 -2.39 -0.02 2.29 16 31 H 0.07 1.59 4.00 -2.39 -0.01 1.58 16 32 H 0.06 1.54 7.38 -2.39 -0.02 1.52 16 33 H 0.06 1.42 7.26 -2.38 -0.02 1.40 16 34 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.02 7.99 -2.39 -0.02 1.00 16 36 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 37 H 0.05 0.81 8.02 -2.39 -0.02 0.79 16 38 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 1.65 2.68 -2.39 -0.01 1.64 16 41 H 0.06 0.99 7.66 -2.38 -0.02 0.97 16 42 H 0.05 0.96 7.94 -2.38 -0.02 0.94 16 43 H 0.07 1.55 7.11 -2.39 -0.02 1.53 16 44 H 0.07 1.43 7.68 -2.39 -0.02 1.41 16 45 H 0.05 1.59 6.42 -2.39 -0.02 1.57 16 46 H 0.04 1.00 4.96 -2.38 -0.01 0.98 16 Total: -1.00 -62.81 329.52 4.45 -58.35 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.92 Total: 10.11 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 4.14 Total: -39.28 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -2.63 Total: -76.40 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -62.81 4.45 -58.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602478382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.935 kcal (2) G-P(sol) polarization free energy of solvation -62.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds