Wall clock time and date at job start Sun Mar 29 2020 23:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46814 * 2 1 4 4 C 1.52998 * 109.47255 * 120.00595 * 2 1 3 5 5 C 1.50701 * 109.46994 * 294.99579 * 4 2 1 6 6 H 1.08002 * 120.00099 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99820 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00223 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00032 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47227 * 119.99981 * 9 7 5 12 12 H 1.48499 * 109.47156 * 240.00052 * 9 7 5 13 13 C 1.53004 * 109.46473 * 240.00636 * 2 1 3 14 14 N 1.46892 * 109.47467 * 64.99784 * 13 2 1 15 15 C 1.46901 * 111.00557 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.46628 * 325.00342 * 15 14 13 17 17 C 1.52996 * 109.46958 * 84.99786 * 15 14 13 18 18 C 1.52992 * 109.47859 * 205.00262 * 15 14 13 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 15 14 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 15 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 24 24 H 1.09001 * 109.47496 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.47047 * 299.99327 * 1 2 3 26 26 H 1.08994 * 109.47587 * 59.99124 * 1 2 3 27 27 H 1.09000 * 109.46908 * 54.99934 * 4 2 1 28 28 H 1.09001 * 109.46964 * 174.99412 * 4 2 1 29 29 H 0.97000 * 120.00285 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.47210 * 304.99748 * 13 2 1 31 31 H 1.09007 * 109.46602 * 185.00104 * 13 2 1 32 32 H 1.00898 * 111.00524 * 303.95382 * 14 13 2 33 33 H 1.09004 * 109.47298 * 300.00639 * 17 15 14 34 34 H 1.09001 * 109.46993 * 60.00224 * 17 15 14 35 35 H 1.09004 * 109.47552 * 180.02562 * 17 15 14 36 36 H 1.08998 * 109.46862 * 300.00546 * 18 15 14 37 37 H 1.09002 * 109.47153 * 59.99783 * 19 18 15 38 38 H 1.09001 * 109.46832 * 299.99974 * 19 18 15 39 39 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 41 41 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 42 42 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47142 * 300.00176 * 22 21 20 45 45 H 1.09001 * 109.47375 * 59.99908 * 23 22 21 46 46 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6415 0.0569 2.4766 6 1 1.0801 0.9740 2.3758 7 6 1.9934 -0.4020 3.7281 8 7 2.6765 -1.5191 3.8509 9 14 1.4988 0.5623 5.2496 10 1 0.7415 1.7734 4.8436 11 1 0.6455 -0.2875 6.1186 12 1 2.7166 0.9678 5.9963 13 6 2.0399 -0.7212 -1.2494 14 7 1.6512 0.0375 -2.4457 15 6 2.1254 -0.6262 -3.6673 16 1 3.0892 -1.0973 -3.4741 17 6 1.1137 -1.6915 -4.0945 18 6 2.2784 0.4086 -4.7837 19 6 2.7729 -0.2827 -6.0559 20 6 2.9264 0.7524 -7.1720 21 6 3.9380 1.8175 -6.7443 22 6 3.4435 2.5089 -5.4721 23 6 3.2900 1.4739 -4.3559 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 1.6054 -1.7199 1.2949 28 1 3.1264 -0.7996 1.2054 29 1 2.9245 -1.8417 4.7314 30 1 1.6052 -1.7197 -1.2954 31 1 3.1262 -0.7994 -1.2058 32 1 0.6527 0.1795 -2.4753 33 1 1.0047 -2.4288 -3.2991 34 1 0.1499 -1.2204 -4.2877 35 1 1.4657 -2.1844 -5.0007 36 1 1.3146 0.8798 -4.9769 37 1 2.0524 -1.0418 -6.3604 38 1 3.7367 -0.7534 -5.8623 39 1 3.2783 0.2598 -8.0785 40 1 1.9627 1.2236 -7.3657 41 1 4.9016 1.3465 -6.5506 42 1 4.0477 2.5547 -7.5397 43 1 4.1640 3.2680 -5.1676 44 1 2.4798 2.9800 -5.6658 45 1 4.2537 1.0027 -4.1622 46 1 2.9381 1.9665 -3.4495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:32 Heat of formation + Delta-G solvation = -69.368872 kcal Electronic energy + Delta-G solvation = -19326.133818 eV Core-core repulsion = 16633.625886 eV Total energy + Delta-G solvation = -2692.507932 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11082 -38.18818 -36.07458 -34.30846 -31.97721 -31.42544 -29.47396 -28.62813 -26.83470 -24.83390 -23.62409 -23.15063 -21.36765 -20.75701 -20.35600 -18.52558 -16.70991 -16.62894 -16.26962 -15.99129 -15.31237 -15.01518 -14.77266 -14.69120 -14.39779 -14.13020 -14.11075 -13.69491 -13.31656 -13.24520 -12.91443 -12.83343 -12.71232 -12.58085 -12.36889 -12.21989 -12.19484 -11.89858 -11.87919 -11.64155 -11.49642 -11.24801 -11.07442 -11.02100 -10.80008 -10.64748 -10.54069 -9.19269 -8.17518 -6.26676 1.39741 1.40254 1.53430 2.42062 3.15867 3.26956 3.75577 3.96822 4.03211 4.15805 4.21543 4.30617 4.38895 4.45712 4.49004 4.51214 4.58876 4.72349 4.74350 4.75093 4.80203 4.83806 4.90599 4.95361 4.99136 5.05346 5.19093 5.21106 5.24559 5.30513 5.34624 5.35972 5.40555 5.41450 5.48836 5.54687 5.56232 5.67374 5.70200 5.81647 5.89977 6.19231 6.33251 6.60914 6.89652 7.41673 8.94827 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.036685 B = 0.003670 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.066633 B = 7627.537400 C = 7937.383462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.081 3.919 14 N -0.681 5.681 15 C 0.085 3.915 16 H 0.060 0.940 17 C -0.178 4.178 18 C -0.064 4.064 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.104 4.104 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.067 0.933 27 H -0.012 1.012 28 H -0.016 1.016 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.051 0.949 32 H 0.343 0.657 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 4.149 -22.542 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.048 4.048 14 N -0.312 5.312 15 C -0.025 4.025 16 H 0.079 0.921 17 C -0.237 4.237 18 C -0.083 4.083 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.142 4.142 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.007 0.993 28 H 0.003 0.997 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.056 4.472 -22.384 22.851 hybrid contribution -0.454 -0.747 1.332 1.593 sum -1.510 3.725 -21.052 21.432 Atomic orbital electron populations 1.21631 0.94963 1.00552 1.01049 1.21010 0.96206 0.98899 0.93262 0.92644 1.19003 0.94076 0.94548 0.92830 1.21674 1.34289 1.08517 0.92062 0.92082 1.25967 0.95288 0.96117 1.02704 1.70112 1.40395 1.23002 1.24209 0.85444 0.78072 0.78891 0.78931 1.18526 1.20490 1.20573 1.21795 0.99017 0.94273 0.89749 1.60572 1.19905 1.49781 1.00927 1.21648 0.97727 0.93328 0.89815 0.92127 1.22493 0.99974 0.99294 1.01905 1.21021 0.99028 0.94989 0.93241 1.21637 1.01147 0.98042 0.94365 1.21504 0.99519 0.96454 0.97778 1.21540 0.98713 0.98172 0.97190 1.21540 1.01123 0.97633 0.95281 1.21404 0.98196 0.96494 0.98122 0.94201 0.93699 0.91469 0.99314 0.99735 0.92962 0.96163 0.93091 0.83780 0.94059 0.91761 0.90518 0.91332 0.91039 0.92603 0.91253 0.91827 0.92568 0.91434 0.92457 0.92037 0.93820 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 8.77 71.98 0.63 -3.96 16 2 C -0.07 -3.12 2.55 -10.79 -0.03 -3.15 16 3 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.03 1.77 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.29 8.41 25.60 0.22 -30.08 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 9 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.08 2.85 4.94 86.31 0.43 3.28 16 14 N -0.68 -19.12 5.48 -491.59 -2.69 -21.81 16 15 C 0.08 1.98 2.17 44.91 0.10 2.08 16 16 H 0.06 1.59 7.80 -2.39 -0.02 1.57 16 17 C -0.18 -3.60 8.81 71.98 0.63 -2.97 16 18 C -0.06 -1.27 1.96 -10.79 -0.02 -1.29 16 19 C -0.11 -1.87 4.85 30.59 0.15 -1.72 16 20 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 21 C -0.12 -1.84 5.92 30.59 0.18 -1.66 16 22 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 23 C -0.10 -2.33 5.04 30.60 0.15 -2.18 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.79 6.95 -2.38 -0.02 1.78 16 26 H 0.07 1.99 6.68 -2.39 -0.02 1.97 16 27 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 28 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.02 0.72 7.44 -2.39 -0.02 0.70 16 31 H 0.05 1.93 8.06 -2.38 -0.02 1.91 16 32 H 0.34 8.94 6.73 -89.70 -0.60 8.34 16 33 H 0.04 0.95 7.45 -2.38 -0.02 0.93 16 34 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 35 H 0.08 1.30 6.43 -2.39 -0.02 1.29 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.05 6.43 -2.39 -0.02 1.03 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 1.54 7.60 -2.39 -0.02 1.52 16 Total: -1.00 -62.75 345.71 3.31 -59.44 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.30 Total: 15.98 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 3.40 Total: -42.95 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -2.41 Total: -79.55 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -62.75 3.31 -59.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.930 kcal (2) G-P(sol) polarization free energy of solvation -62.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds