Wall clock time and date at job start Sun Mar 29 2020 23:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46773 * 2 1 4 4 C 1.52998 * 109.47235 * 119.99562 * 2 1 3 5 5 C 1.53005 * 109.47057 * 65.84972 * 4 2 1 6 6 C 1.53004 * 115.54807 * 58.05043 * 5 4 2 7 7 N 1.46901 * 109.47165 * 39.46667 * 6 5 4 8 8 C 1.46900 * 110.99471 * 175.58107 * 7 6 5 9 9 C 1.53006 * 109.46693 * 184.57449 * 8 7 6 10 10 H 1.08992 * 109.47098 * 53.98112 * 9 8 7 11 11 C 1.52994 * 109.47106 * 293.97587 * 9 8 7 12 12 C 1.53005 * 109.47005 * 173.97695 * 9 8 7 13 13 C 1.50692 * 109.47134 * 185.00039 * 12 9 8 14 14 H 1.08002 * 120.00244 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00305 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99594 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00270 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46942 * 90.00228 * 17 15 13 19 19 H 1.48501 * 109.46941 * 209.99848 * 17 15 13 20 20 H 1.48494 * 109.47047 * 329.99790 * 17 15 13 21 21 C 1.53002 * 117.51944 * 203.74754 * 5 4 2 22 22 C 1.52991 * 117.49896 * 272.37810 * 5 4 2 23 23 H 1.08994 * 109.47324 * 61.54784 * 1 2 3 24 24 H 1.09000 * 109.47166 * 181.55136 * 1 2 3 25 25 H 1.09003 * 109.46928 * 301.54190 * 1 2 3 26 26 H 1.09002 * 109.47029 * 239.99784 * 2 1 3 27 27 H 1.09004 * 109.46836 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46942 * 299.99942 * 3 2 1 29 29 H 1.09002 * 109.47519 * 60.00084 * 3 2 1 30 30 H 1.08998 * 109.47358 * 305.84870 * 4 2 1 31 31 H 1.09006 * 109.47192 * 185.85021 * 4 2 1 32 32 H 1.09010 * 109.46581 * 279.47043 * 6 5 4 33 33 H 1.08998 * 109.47057 * 159.47292 * 6 5 4 34 34 H 1.00893 * 110.99767 * 51.63475 * 7 6 5 35 35 H 1.08994 * 109.47669 * 64.57503 * 8 7 6 36 36 H 1.09004 * 109.47612 * 304.57232 * 8 7 6 37 37 H 1.09000 * 109.47243 * 294.97793 * 11 9 8 38 38 H 1.09002 * 109.47337 * 54.97781 * 11 9 8 39 39 H 1.09002 * 109.47296 * 174.97953 * 11 9 8 40 40 H 1.09000 * 109.47330 * 305.00400 * 12 9 8 41 41 H 1.09003 * 109.46963 * 64.99546 * 12 9 8 42 42 H 0.97002 * 120.00275 * 180.02562 * 16 15 13 43 43 H 1.08998 * 117.49920 * 214.97257 * 21 5 4 44 44 H 1.09000 * 117.49410 * 359.97438 * 21 5 4 45 45 H 1.08998 * 117.50176 * 359.97438 * 22 5 4 46 46 H 1.09000 * 117.50111 * 144.99547 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6536 -2.1999 1.1780 6 6 2.1711 -2.9589 -0.0455 7 7 3.5405 -2.5225 -0.3494 8 6 4.1091 -3.3050 -1.4550 9 6 5.5698 -2.9017 -1.6667 10 1 6.1123 -2.9943 -0.7259 11 6 5.6334 -1.4520 -2.1515 12 6 6.2052 -3.8181 -2.7142 13 6 7.6737 -3.5019 -2.8338 14 1 8.1103 -2.7252 -2.2234 15 6 8.4601 -4.2040 -3.7225 16 7 7.9283 -5.1495 -4.4662 17 14 10.2803 -3.8115 -3.8712 18 1 11.0471 -4.6495 -2.9147 19 1 10.7366 -4.0967 -5.2553 20 1 10.5040 -2.3765 -3.5620 21 6 1.5550 -2.9691 2.4969 22 6 0.2838 -2.5994 1.7300 23 1 -0.3633 0.4896 -0.9035 24 1 -0.3633 -1.0273 0.0278 25 1 -0.3633 0.5376 0.8759 26 1 1.8933 -0.5139 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.5937 -0.2713 2.1361 31 1 3.1250 -0.6313 1.3032 32 1 1.5262 -2.7535 -0.9000 33 1 2.1684 -4.0288 0.1628 34 1 4.1269 -2.5752 0.4699 35 1 3.5430 -3.1113 -2.3660 36 1 4.0567 -4.3666 -1.2134 37 1 5.1685 -1.3769 -3.1346 38 1 5.1025 -0.8101 -1.4485 39 1 6.6746 -1.1361 -2.2170 40 1 6.0809 -4.8577 -2.4109 41 1 5.7199 -3.6603 -3.6774 42 1 8.4815 -5.6438 -5.0911 43 1 1.8588 -4.0159 2.4929 44 1 1.7659 -2.4218 3.4157 45 1 -0.3420 -1.8090 2.1443 46 1 -0.2489 -3.4030 1.2215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602570912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:42 Heat of formation + Delta-G solvation = -18.039714 kcal Electronic energy + Delta-G solvation = -19341.123039 eV Core-core repulsion = 16650.840907 eV Total energy + Delta-G solvation = -2690.282132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.18548 -36.42223 -34.94042 -33.51543 -31.75414 -27.78984 -27.14400 -26.90206 -26.08705 -24.10537 -22.52330 -22.02095 -20.47220 -19.32738 -18.44387 -16.31732 -15.92946 -15.35912 -14.72890 -14.55897 -14.29247 -14.11418 -13.70653 -13.54461 -13.15246 -12.66073 -12.37197 -12.23883 -12.08633 -11.80525 -11.65282 -11.58322 -11.39618 -11.26549 -10.97945 -10.87549 -10.82591 -10.70857 -10.41202 -10.27902 -10.20055 -9.97802 -9.68687 -9.56254 -9.10856 -8.91671 -8.30772 -8.03706 -5.95588 -3.96589 3.34259 3.40565 3.44085 3.66883 4.37666 4.50975 4.62567 4.80935 4.94432 5.01344 5.12992 5.18414 5.35695 5.40275 5.53114 5.59317 5.65502 5.70807 5.75909 5.81610 5.82656 5.86915 5.89755 5.95614 6.03419 6.04956 6.10346 6.18253 6.20754 6.36790 6.42835 6.47657 6.58640 6.61331 6.72271 7.05930 7.21444 7.23553 7.43693 7.70235 7.74758 7.88437 8.04924 8.49130 9.09954 9.66736 11.15997 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.003949 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.004014 B = 7087.834274 C = 7533.462773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.062 4.062 5 C -0.114 4.114 6 C 0.096 3.904 7 N -0.680 5.680 8 C 0.063 3.937 9 C -0.082 4.082 10 H 0.052 0.948 11 C -0.122 4.122 12 C 0.027 3.973 13 C -0.512 4.512 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.182 4.182 22 C -0.174 4.174 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.337 0.663 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.040 0.960 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.011 0.989 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 8.055 11.849 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.099 4.099 5 C -0.114 4.114 6 C -0.033 4.033 7 N -0.310 5.310 8 C -0.065 4.065 9 C -0.101 4.101 10 H 0.071 0.929 11 C -0.179 4.179 12 C -0.010 4.010 13 C -0.550 4.550 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.219 4.219 22 C -0.212 4.212 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.155 0.845 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.392 8.449 11.289 20.874 hybrid contribution 1.142 -0.881 0.284 1.470 sum -14.250 7.567 11.573 19.856 Atomic orbital electron populations 1.21933 0.96255 1.01690 1.00692 1.21024 0.94758 0.95607 0.99526 1.21815 1.01318 0.96290 1.00818 1.20974 1.01314 0.90658 0.96962 1.21571 0.99458 0.96179 0.94185 1.21427 0.91406 0.94999 0.95465 1.60565 1.02201 1.57557 1.10682 1.22145 0.96950 0.93919 0.93494 1.21201 0.92007 0.96824 1.00086 0.92937 1.21581 1.00812 0.95976 0.99565 1.19126 0.95093 0.93708 0.93104 1.21243 0.93927 1.18560 1.21277 0.92602 1.25022 0.98428 0.95251 0.95861 1.69969 1.35691 1.23169 1.24909 0.86633 0.85727 0.78697 0.77191 1.20789 1.21312 1.19876 1.23104 1.02326 1.00715 0.95743 1.23001 0.90753 1.03239 1.04158 0.93456 0.92277 0.93597 0.89583 0.92456 0.93164 0.93575 0.93175 0.90801 0.91033 0.95720 0.84546 0.91662 0.95952 0.94125 0.93744 0.93102 0.97029 0.96580 0.93130 0.89149 0.89071 0.88869 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.69 37.16 0.32 -1.08 16 2 C -0.09 -0.96 2.80 -90.62 -0.25 -1.22 16 3 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 4 C -0.06 -0.64 4.13 -26.73 -0.11 -0.75 16 5 C -0.11 -1.18 1.50 -154.51 -0.23 -1.41 16 6 C 0.10 1.18 4.91 -3.82 -0.02 1.16 16 7 N -0.68 -9.54 4.80 -113.77 -0.55 -10.08 16 8 C 0.06 1.09 5.09 -3.82 -0.02 1.07 16 9 C -0.08 -1.68 2.44 -90.62 -0.22 -1.90 16 10 H 0.05 1.08 8.11 -51.93 -0.42 0.66 16 11 C -0.12 -2.36 8.87 37.15 0.33 -2.03 16 12 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 13 C -0.51 -14.44 8.47 -34.44 -0.29 -14.73 16 14 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 17 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.18 -1.75 9.89 -26.73 -0.26 -2.01 16 22 C -0.17 -1.59 8.07 -26.74 -0.22 -1.80 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.56 5.94 -51.93 -0.31 0.25 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 1.09 6.90 -51.93 -0.36 0.73 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.49 8.11 -51.93 -0.42 0.07 16 31 H 0.07 0.85 7.65 -51.93 -0.40 0.45 16 32 H 0.07 0.91 7.91 -51.92 -0.41 0.50 16 33 H 0.02 0.31 7.91 -51.93 -0.41 -0.10 16 34 H 0.34 4.67 8.46 -39.30 -0.33 4.34 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.76 7.66 -51.93 -0.40 0.36 16 39 H 0.05 1.05 7.10 -51.93 -0.37 0.68 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.79 7.92 -51.93 -0.41 0.38 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -28.72 357.70 -9.53 -38.25 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -9.23 Total: -0.14 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -0.86 Total: -23.76 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.19 Total: -36.56 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.72 -9.53 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602570912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.209 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds