Wall clock time and date at job start Sun Mar 29 2020 23:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46773 * 2 1 4 4 C 1.52998 * 109.47235 * 119.99562 * 2 1 3 5 5 C 1.53005 * 109.47057 * 65.84972 * 4 2 1 6 6 C 1.53004 * 115.54807 * 58.05043 * 5 4 2 7 7 N 1.46901 * 109.47165 * 39.46667 * 6 5 4 8 8 C 1.46900 * 110.99471 * 175.58107 * 7 6 5 9 9 C 1.53006 * 109.46693 * 184.57449 * 8 7 6 10 10 H 1.08992 * 109.47098 * 53.98112 * 9 8 7 11 11 C 1.52994 * 109.47106 * 293.97587 * 9 8 7 12 12 C 1.53005 * 109.47005 * 173.97695 * 9 8 7 13 13 C 1.50692 * 109.47134 * 185.00039 * 12 9 8 14 14 H 1.08002 * 120.00244 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00305 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99594 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00270 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46942 * 90.00228 * 17 15 13 19 19 H 1.48501 * 109.46941 * 209.99848 * 17 15 13 20 20 H 1.48494 * 109.47047 * 329.99790 * 17 15 13 21 21 C 1.53002 * 117.51944 * 203.74754 * 5 4 2 22 22 C 1.52991 * 117.49896 * 272.37810 * 5 4 2 23 23 H 1.08994 * 109.47324 * 61.54784 * 1 2 3 24 24 H 1.09000 * 109.47166 * 181.55136 * 1 2 3 25 25 H 1.09003 * 109.46928 * 301.54190 * 1 2 3 26 26 H 1.09002 * 109.47029 * 239.99784 * 2 1 3 27 27 H 1.09004 * 109.46836 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46942 * 299.99942 * 3 2 1 29 29 H 1.09002 * 109.47519 * 60.00084 * 3 2 1 30 30 H 1.08998 * 109.47358 * 305.84870 * 4 2 1 31 31 H 1.09006 * 109.47192 * 185.85021 * 4 2 1 32 32 H 1.09010 * 109.46581 * 279.47043 * 6 5 4 33 33 H 1.08998 * 109.47057 * 159.47292 * 6 5 4 34 34 H 1.00893 * 110.99767 * 51.63475 * 7 6 5 35 35 H 1.08994 * 109.47669 * 64.57503 * 8 7 6 36 36 H 1.09004 * 109.47612 * 304.57232 * 8 7 6 37 37 H 1.09000 * 109.47243 * 294.97793 * 11 9 8 38 38 H 1.09002 * 109.47337 * 54.97781 * 11 9 8 39 39 H 1.09002 * 109.47296 * 174.97953 * 11 9 8 40 40 H 1.09000 * 109.47330 * 305.00400 * 12 9 8 41 41 H 1.09003 * 109.46963 * 64.99546 * 12 9 8 42 42 H 0.97002 * 120.00275 * 180.02562 * 16 15 13 43 43 H 1.08998 * 117.49920 * 214.97257 * 21 5 4 44 44 H 1.09000 * 117.49410 * 359.97438 * 21 5 4 45 45 H 1.08998 * 117.50176 * 359.97438 * 22 5 4 46 46 H 1.09000 * 117.50111 * 144.99547 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6536 -2.1999 1.1780 6 6 2.1711 -2.9589 -0.0455 7 7 3.5405 -2.5225 -0.3494 8 6 4.1091 -3.3050 -1.4550 9 6 5.5698 -2.9017 -1.6667 10 1 6.1123 -2.9943 -0.7259 11 6 5.6334 -1.4520 -2.1515 12 6 6.2052 -3.8181 -2.7142 13 6 7.6737 -3.5019 -2.8338 14 1 8.1103 -2.7252 -2.2234 15 6 8.4601 -4.2040 -3.7225 16 7 7.9283 -5.1495 -4.4662 17 14 10.2803 -3.8115 -3.8712 18 1 11.0471 -4.6495 -2.9147 19 1 10.7366 -4.0967 -5.2553 20 1 10.5040 -2.3765 -3.5620 21 6 1.5550 -2.9691 2.4969 22 6 0.2838 -2.5994 1.7300 23 1 -0.3633 0.4896 -0.9035 24 1 -0.3633 -1.0273 0.0278 25 1 -0.3633 0.5376 0.8759 26 1 1.8933 -0.5139 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.5937 -0.2713 2.1361 31 1 3.1250 -0.6313 1.3032 32 1 1.5262 -2.7535 -0.9000 33 1 2.1684 -4.0288 0.1628 34 1 4.1269 -2.5752 0.4699 35 1 3.5430 -3.1113 -2.3660 36 1 4.0567 -4.3666 -1.2134 37 1 5.1685 -1.3769 -3.1346 38 1 5.1025 -0.8101 -1.4485 39 1 6.6746 -1.1361 -2.2170 40 1 6.0809 -4.8577 -2.4109 41 1 5.7199 -3.6603 -3.6774 42 1 8.4815 -5.6438 -5.0911 43 1 1.8588 -4.0159 2.4929 44 1 1.7659 -2.4218 3.4157 45 1 -0.3420 -1.8090 2.1443 46 1 -0.2489 -3.4030 1.2215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602570912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:42 Heat of formation + Delta-G solvation = -32.170031 kcal Electronic energy + Delta-G solvation = -19341.735776 eV Core-core repulsion = 16650.840907 eV Total energy + Delta-G solvation = -2690.894869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06458 -37.93939 -35.78268 -35.22132 -33.58909 -29.18714 -28.38742 -27.89363 -27.35854 -25.73279 -23.84545 -23.12227 -21.35160 -20.83854 -19.45445 -18.47558 -16.95916 -16.56815 -16.29718 -15.89553 -15.50150 -15.17613 -14.98217 -14.51872 -14.37768 -14.18100 -13.73258 -13.55842 -13.23750 -13.10381 -12.96507 -12.77689 -12.61016 -12.55026 -12.30122 -12.25602 -12.20537 -11.96681 -11.80200 -11.66705 -11.47968 -11.24229 -11.09523 -10.97705 -10.67883 -10.53195 -10.37114 -9.25948 -8.17222 -6.26450 1.40286 1.41377 1.52510 2.42339 2.86955 3.16257 3.31181 3.81429 3.99905 4.05506 4.14380 4.21516 4.30793 4.33479 4.39208 4.52840 4.56656 4.68927 4.82827 4.85343 4.90256 4.90966 4.94938 5.00399 5.03176 5.06202 5.08310 5.11839 5.23809 5.29613 5.30308 5.31896 5.37271 5.48455 5.51377 5.55299 5.57889 5.63966 5.76014 5.82335 5.89482 6.13284 6.32442 6.55019 6.89788 7.41970 8.94956 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.003949 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.004014 B = 7087.834274 C = 7533.462773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.056 4.056 5 C -0.121 4.121 6 C 0.100 3.900 7 N -0.671 5.671 8 C 0.078 3.922 9 C -0.073 4.073 10 H 0.053 0.947 11 C -0.111 4.111 12 C 0.032 3.968 13 C -0.528 4.528 14 H 0.061 0.939 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.961 3.039 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.263 1.263 21 C -0.180 4.180 22 C -0.162 4.162 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.341 0.659 35 H 0.059 0.941 36 H 0.013 0.987 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.036 0.964 40 H -0.016 1.016 41 H -0.011 1.011 42 H 0.262 0.738 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.566 9.306 13.364 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.094 4.094 5 C -0.122 4.122 6 C -0.029 4.029 7 N -0.301 5.301 8 C -0.051 4.051 9 C -0.092 4.092 10 H 0.072 0.928 11 C -0.168 4.168 12 C -0.005 4.005 13 C -0.567 4.567 14 H 0.079 0.921 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.187 1.187 21 C -0.217 4.217 22 C -0.199 4.199 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.159 0.841 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.002 0.998 41 H 0.007 0.993 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.124 0.876 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.738 9.711 12.822 22.503 hybrid contribution 1.195 -1.292 -0.185 1.769 sum -14.543 8.419 12.637 21.026 Atomic orbital electron populations 1.21889 0.95236 1.01860 1.01181 1.20975 0.95609 0.95594 0.98632 1.21798 1.00714 0.96160 1.01417 1.20917 1.00607 0.90609 0.97260 1.21437 1.00942 0.96048 0.93753 1.21411 0.90020 0.95090 0.96420 1.60494 1.03059 1.56576 1.10012 1.21831 0.94964 0.93717 0.94618 1.21006 0.93636 0.96320 0.98199 0.92830 1.21467 1.00124 0.95445 0.99785 1.19023 0.94738 0.93381 0.93397 1.21645 0.95140 1.18579 1.21287 0.92080 1.25958 1.03550 0.95005 0.95461 1.70107 1.37640 1.24303 1.25682 0.85503 0.79574 0.79025 0.77314 1.19886 1.20940 1.18697 1.23151 1.02494 1.00491 0.95562 1.23056 0.90279 1.03397 1.03207 0.93524 0.92281 0.92529 0.91890 0.93371 0.93137 0.92416 0.91994 0.91988 0.91503 0.96092 0.84094 0.92262 0.96874 0.94933 0.91150 0.94525 0.99780 0.99285 0.92966 0.89504 0.88113 0.87648 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.69 71.98 0.63 -1.82 16 2 C -0.09 -1.76 2.80 -10.79 -0.03 -1.79 16 3 C -0.14 -2.69 9.19 71.98 0.66 -2.03 16 4 C -0.06 -1.06 4.13 30.60 0.13 -0.94 16 5 C -0.12 -2.30 1.50 -52.18 -0.08 -2.37 16 6 C 0.10 2.35 4.91 86.30 0.42 2.78 16 7 N -0.67 -18.33 4.80 -513.86 -2.47 -20.80 16 8 C 0.08 2.70 5.09 86.31 0.44 3.14 16 9 C -0.07 -2.99 2.44 -10.79 -0.03 -3.01 16 10 H 0.05 2.19 8.11 -2.39 -0.02 2.17 16 11 C -0.11 -4.26 8.87 71.98 0.64 -3.62 16 12 C 0.03 1.72 4.45 29.85 0.13 1.85 16 13 C -0.53 -30.21 8.47 25.60 0.22 -30.00 16 14 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 15 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 16 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 17 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 21 C -0.18 -3.06 9.89 30.59 0.30 -2.76 16 22 C -0.16 -2.56 8.07 30.59 0.25 -2.31 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.99 5.94 -2.39 -0.01 0.98 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 1.54 6.90 -2.39 -0.02 1.52 16 27 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16 31 H 0.06 1.32 7.65 -2.38 -0.02 1.30 16 32 H 0.07 1.65 7.91 -2.38 -0.02 1.63 16 33 H 0.02 0.52 7.91 -2.39 -0.02 0.50 16 34 H 0.34 9.05 8.46 -89.70 -0.76 8.29 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.01 0.48 8.10 -2.39 -0.02 0.46 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 2.32 7.66 -2.39 -0.02 2.30 16 39 H 0.04 1.48 7.10 -2.39 -0.02 1.47 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 44 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.11 1.44 7.92 -2.39 -0.02 1.42 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -61.75 357.70 4.12 -57.62 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.14 Total: 16.48 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 4.14 Total: -42.56 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.18 Total: -78.42 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -61.75 4.12 -57.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602570912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.455 kcal (2) G-P(sol) polarization free energy of solvation -61.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds