Wall clock time and date at job start Sun Mar 29 2020 23:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47527 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00126 * 2 1 3 5 5 C 1.50696 * 109.46919 * 294.99716 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.53004 * 109.47082 * 240.00266 * 2 1 3 14 14 N 1.46899 * 109.47039 * 64.99745 * 13 2 1 15 15 C 1.46907 * 110.99495 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.47496 * 325.00339 * 15 14 13 17 17 C 1.52998 * 109.46816 * 85.00350 * 15 14 13 18 18 C 1.53005 * 109.47135 * 179.97438 * 17 15 14 19 19 C 1.53008 * 109.47044 * 300.00267 * 18 17 15 20 20 C 1.53002 * 109.46877 * 59.99754 * 19 18 17 21 21 C 1.52996 * 109.47090 * 299.99575 * 20 19 18 22 22 C 1.52993 * 109.47566 * 300.00565 * 21 20 19 23 23 C 1.53002 * 109.47082 * 180.02562 * 21 20 19 24 24 H 1.09000 * 109.47048 * 300.00084 * 1 2 3 25 25 H 1.09001 * 109.46743 * 59.99815 * 1 2 3 26 26 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46497 * 174.99981 * 4 2 1 28 28 H 1.08999 * 109.46623 * 55.00045 * 4 2 1 29 29 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 30 30 H 1.08995 * 109.46860 * 185.00644 * 13 2 1 31 31 H 1.09001 * 109.46604 * 304.99920 * 13 2 1 32 32 H 1.00900 * 111.00009 * 56.05390 * 14 13 2 33 33 H 1.08997 * 109.47631 * 299.99524 * 17 15 14 34 34 H 1.08999 * 109.47380 * 60.00182 * 17 15 14 35 35 H 1.09002 * 109.47078 * 60.00050 * 18 17 15 36 36 H 1.08996 * 109.47463 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.46873 * 179.97438 * 19 18 17 38 38 H 1.08994 * 109.46692 * 299.99827 * 19 18 17 39 39 H 1.08994 * 109.47400 * 60.00507 * 20 19 18 40 40 H 1.09003 * 109.46289 * 180.02562 * 20 19 18 41 41 H 1.09006 * 109.47277 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.47255 * 299.99536 * 22 21 20 43 43 H 1.09005 * 109.47243 * 59.99981 * 22 21 20 44 44 H 1.09002 * 109.46922 * 300.00442 * 23 21 20 45 45 H 1.09000 * 109.47184 * 60.00009 * 23 21 20 46 46 H 1.08996 * 109.47387 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4018 3.7283 8 7 2.6815 -1.5157 3.8507 9 14 1.4997 0.5634 5.2496 10 1 0.0197 0.6701 5.3095 11 1 1.9946 -0.1368 6.4621 12 1 2.0919 1.9238 5.1865 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1247 -0.6271 -3.6673 16 1 3.0883 -1.0988 -3.4743 17 6 1.1120 -1.6917 -4.0937 18 6 1.6047 -2.3836 -5.3664 19 6 1.7576 -1.3486 -6.4829 20 6 2.7703 -0.2840 -6.0564 21 6 2.2775 0.4078 -4.7838 22 6 0.9249 1.0697 -5.0542 23 6 3.2899 1.4728 -4.3576 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1263 -0.7995 1.2055 28 1 1.6053 -1.7198 1.2950 29 1 2.9380 -2.0168 3.0608 30 1 3.1263 -0.7995 -1.2056 31 1 1.6054 -1.7198 -1.2952 32 1 1.9882 0.9873 -2.3967 33 1 1.0029 -2.4288 -3.2982 34 1 0.1485 -1.2201 -4.2868 35 1 2.5683 -2.8552 -5.1738 36 1 0.8831 -3.1417 -5.6705 37 1 2.1090 -1.8414 -7.3894 38 1 0.7940 -0.8771 -6.6755 39 1 3.7339 -0.7556 -5.8638 40 1 2.8788 0.4535 -6.8517 41 1 0.5741 1.5630 -4.1476 42 1 1.0338 1.8071 -5.8496 43 1 0.2034 0.3112 -5.3580 44 1 4.2537 1.0015 -4.1651 45 1 3.3985 2.2100 -5.1531 46 1 2.9391 1.9654 -3.4507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602571445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:03 Heat of formation + Delta-G solvation = -65.217407 kcal Electronic energy + Delta-G solvation = -19839.117965 eV Core-core repulsion = 17146.790055 eV Total energy + Delta-G solvation = -2692.327911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92561 -38.00385 -35.51903 -34.26761 -33.53914 -30.24469 -28.43499 -28.12658 -27.22360 -26.37051 -24.63548 -22.54693 -21.96773 -21.10712 -19.15402 -18.85941 -16.94228 -16.34019 -16.17705 -15.76026 -15.58016 -15.36960 -15.21409 -15.01970 -14.18325 -13.94519 -13.77181 -13.65857 -13.40150 -13.17005 -12.98959 -12.84229 -12.76869 -12.57226 -12.36850 -12.31350 -12.08420 -11.96138 -11.93725 -11.71610 -11.59242 -11.38736 -11.09167 -10.94960 -10.86044 -10.53843 -10.51596 -9.32519 -8.66448 -6.35448 1.51957 1.60826 1.79758 2.57529 3.16841 3.18091 3.66454 3.74984 3.91691 4.05107 4.17480 4.20007 4.33814 4.37509 4.41492 4.47837 4.49489 4.58577 4.72895 4.76420 4.78382 4.82413 4.86511 4.91094 4.97601 5.05980 5.09366 5.11921 5.14997 5.17305 5.26010 5.26959 5.30336 5.35766 5.40219 5.45040 5.46719 5.52612 5.63310 5.69301 6.01778 6.15442 6.21085 6.50743 6.60866 7.45859 8.74036 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.039425 B = 0.004038 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.038208 B = 6931.738217 C = 7110.465137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 H 0.051 0.949 4 C 0.017 3.983 5 C -0.605 4.605 6 H 0.053 0.947 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.117 2.883 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.080 3.920 14 N -0.676 5.676 15 C 0.098 3.902 16 H 0.024 0.976 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.104 4.104 21 C -0.061 4.061 22 C -0.134 4.134 23 C -0.148 4.148 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.032 0.968 27 H -0.020 1.020 28 H -0.015 1.015 29 H 0.253 0.747 30 H 0.010 0.990 31 H 0.058 0.942 32 H 0.341 0.659 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 3.928 -22.615 23.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.021 4.021 5 C -0.643 4.643 6 H 0.071 0.929 7 C -0.239 4.239 8 N -0.580 5.580 9 Si 0.938 3.062 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.050 4.050 14 N -0.309 5.309 15 C -0.012 4.012 16 H 0.042 0.958 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.142 4.142 21 C -0.061 4.061 22 C -0.191 4.191 23 C -0.205 4.205 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.052 0.948 27 H -0.002 1.002 28 H 0.003 0.997 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.162 0.838 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.554 3.677 -21.015 21.486 hybrid contribution 1.223 -0.339 -1.134 1.702 sum -1.331 3.338 -22.149 22.439 Atomic orbital electron populations 1.21450 0.94413 1.00253 1.00589 1.20890 0.96884 0.98111 0.92676 0.93046 1.19183 0.93547 0.94871 0.94485 1.22433 1.38108 1.10385 0.93364 0.92882 1.27436 0.93991 0.97266 1.05246 1.70918 1.37894 1.16404 1.32744 0.82950 0.76981 0.74544 0.71766 1.19367 1.21024 1.19381 1.21845 0.95874 0.97396 0.89854 1.60563 1.64017 1.05691 1.00662 1.21549 0.95450 0.94765 0.89391 0.95827 1.21536 0.99260 0.96774 0.96898 1.21529 1.01052 0.98139 0.94776 1.21569 0.99950 0.96208 0.97707 1.21571 0.98414 0.98068 0.96173 1.20638 0.96538 0.94435 0.94517 1.21845 0.95565 1.00255 1.01422 1.21949 0.98199 0.98743 1.01651 0.94476 0.91159 0.94835 1.00204 0.99706 0.93794 0.97155 0.92399 0.83771 0.94162 0.91036 0.92792 0.91203 0.90947 0.91117 0.92612 0.90504 0.92972 0.92068 0.92032 0.93430 0.90804 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 2 C -0.07 -2.83 2.48 -10.79 -0.03 -2.85 16 3 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.02 0.90 3.76 29.85 0.11 1.01 16 5 C -0.61 -35.25 8.41 25.60 0.22 -35.04 16 6 H 0.05 3.00 7.06 -2.91 -0.02 2.98 16 7 C -0.04 -2.55 5.46 84.66 0.46 -2.08 16 8 N -0.94 -60.16 13.65 21.45 0.29 -59.87 16 9 Si 1.12 51.39 29.90 68.60 2.05 53.44 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 C 0.08 2.86 4.87 86.30 0.42 3.28 16 14 N -0.68 -19.34 5.04 -491.55 -2.48 -21.82 16 15 C 0.10 2.38 1.67 44.91 0.07 2.46 16 16 H 0.02 0.65 7.80 -2.39 -0.02 0.63 16 17 C -0.11 -2.47 5.15 30.60 0.16 -2.31 16 18 C -0.12 -2.13 5.92 30.60 0.18 -1.95 16 19 C -0.12 -1.75 5.65 30.60 0.17 -1.58 16 20 C -0.10 -1.65 4.73 30.59 0.14 -1.51 16 21 C -0.06 -1.15 0.54 -52.18 -0.03 -1.18 16 22 C -0.13 -2.41 7.62 71.98 0.55 -1.87 16 23 C -0.15 -2.76 8.24 71.98 0.59 -2.17 16 24 H 0.04 1.57 6.95 -2.39 -0.02 1.55 16 25 H 0.07 2.40 7.75 -2.39 -0.02 2.39 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H -0.02 -1.17 8.00 -2.39 -0.02 -1.19 16 28 H -0.02 -0.89 8.01 -2.39 -0.02 -0.91 16 29 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 30 H 0.01 0.39 8.06 -2.39 -0.02 0.37 16 31 H 0.06 2.16 7.44 -2.39 -0.02 2.14 16 32 H 0.34 9.38 6.01 -89.69 -0.54 8.84 16 33 H 0.04 1.08 7.45 -2.39 -0.02 1.06 16 34 H 0.07 1.65 6.43 -2.39 -0.02 1.64 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.02 6.43 -2.39 -0.02 1.00 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.08 7.48 -2.38 -0.02 1.06 16 42 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.06 1.10 4.81 -2.38 -0.01 1.09 16 44 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.05 1.04 6.21 -2.39 -0.01 1.02 16 Total: -1.00 -64.82 337.82 4.01 -60.81 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.48 Total: 16.93 kcal Atomic # 6 Polarization: -53.16 SS G_CDS: 3.67 Total: -49.49 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -2.19 Total: -81.69 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -64.82 4.01 -60.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602571445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.410 kcal (2) G-P(sol) polarization free energy of solvation -64.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds