Wall clock time and date at job start Sun Mar 29 2020 23:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 C 1.53002 * 109.47422 * 239.99874 * 2 1 3 5 5 C 1.50697 * 109.46739 * 64.99828 * 4 2 1 6 6 H 1.08003 * 120.00432 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99859 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00151 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99927 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47336 * 90.00101 * 9 7 5 11 11 H 1.48505 * 109.46941 * 210.00225 * 9 7 5 12 12 H 1.48496 * 109.47046 * 329.99927 * 9 7 5 13 13 C 1.53006 * 109.47377 * 119.99940 * 2 1 3 14 14 N 1.46895 * 109.47293 * 185.33347 * 13 2 1 15 15 C 1.47898 * 110.98916 * 74.33264 * 14 13 2 16 16 C 1.54319 * 107.00299 * 123.25314 * 15 14 13 17 17 C 1.55140 * 103.17284 * 22.33309 * 16 15 14 18 18 H 1.08996 * 110.99244 * 82.35610 * 17 16 15 19 19 C 1.53005 * 110.98563 * 206.13081 * 17 16 15 20 20 C 1.53000 * 109.47327 * 58.75835 * 19 17 16 21 21 C 1.53010 * 109.46700 * 178.75798 * 19 17 16 22 22 C 1.52992 * 109.47271 * 298.75334 * 19 17 16 23 23 C 1.47841 * 111.00120 * 195.23985 * 14 13 2 24 24 H 1.08996 * 109.47371 * 304.51789 * 1 2 3 25 25 H 1.08994 * 109.47323 * 64.52406 * 1 2 3 26 26 H 1.09009 * 109.46867 * 184.52107 * 1 2 3 27 27 H 1.08999 * 109.46809 * 184.99490 * 4 2 1 28 28 H 1.08995 * 109.46906 * 305.00104 * 4 2 1 29 29 H 0.96996 * 120.00499 * 179.97438 * 8 7 5 30 30 H 1.08991 * 109.47036 * 65.32796 * 13 2 1 31 31 H 1.09002 * 109.46718 * 305.33280 * 13 2 1 32 32 H 1.09005 * 110.03470 * 3.90054 * 15 14 13 33 33 H 1.09000 * 109.97390 * 242.56874 * 15 14 13 34 34 H 1.09000 * 110.70733 * 263.86432 * 16 15 14 35 35 H 1.08996 * 110.70679 * 140.80207 * 16 15 14 36 36 H 1.09004 * 109.46913 * 63.84984 * 20 19 17 37 37 H 1.09000 * 109.46835 * 183.84191 * 20 19 17 38 38 H 1.08995 * 109.47146 * 303.85226 * 20 19 17 39 39 H 1.08997 * 109.47177 * 60.00046 * 21 19 17 40 40 H 1.08997 * 109.46862 * 180.02562 * 21 19 17 41 41 H 1.09004 * 109.47040 * 299.99977 * 21 19 17 42 42 H 1.09006 * 109.47091 * 60.00467 * 22 19 17 43 43 H 1.09009 * 109.47365 * 180.02562 * 22 19 17 44 44 H 1.08997 * 109.47436 * 300.00462 * 22 19 17 45 45 H 1.08992 * 110.37866 * 94.80672 * 23 14 13 46 46 H 1.09002 * 110.37419 * 332.46231 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0806 0.9745 -2.3756 7 6 1.9933 -0.4017 -3.7282 8 7 2.6765 -1.5187 -3.8511 9 14 1.4997 0.5634 -5.2496 10 1 2.5651 1.5430 -5.5817 11 1 1.3130 -0.3703 -6.3892 12 1 0.2284 1.2846 -4.9873 13 6 2.0400 -0.7213 1.2493 14 7 3.5033 -0.6108 1.3154 15 6 3.9140 0.7513 1.7197 16 6 4.7889 0.6027 2.9822 17 6 5.2939 -0.8615 2.8921 18 1 6.1581 -0.9365 2.2320 19 6 5.6188 -1.4155 4.2808 20 6 4.3680 -1.3545 5.1597 21 6 6.0831 -2.8680 4.1544 22 6 6.7304 -0.5784 4.9166 23 6 4.0648 -1.5794 2.2809 24 1 -0.3634 0.5823 0.8467 25 1 -0.3633 0.4420 -0.9277 26 1 -0.3633 -1.0246 0.0810 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 2.9238 -1.8417 -4.7317 30 1 1.7567 -1.7727 1.2029 31 1 1.6008 -0.2655 2.1367 32 1 3.0349 1.3545 1.9467 33 1 4.4910 1.2186 0.9217 34 1 4.1936 0.7502 3.8833 35 1 5.6253 1.3011 2.9559 36 1 3.5990 -2.0050 4.7430 37 1 4.6162 -1.6852 6.1683 38 1 3.9977 -0.3300 5.1940 39 1 6.9742 -2.9115 3.5283 40 1 6.3141 -3.2629 5.1437 41 1 5.2911 -3.4645 3.7014 42 1 6.3997 0.4564 5.0066 43 1 6.9622 -0.9734 5.9058 44 1 7.6215 -0.6219 4.2904 45 1 4.3735 -2.4905 1.7686 46 1 3.3344 -1.8083 3.0570 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602609640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:51 Heat of formation + Delta-G solvation = -45.549834 kcal Electronic energy + Delta-G solvation = -19834.945015 eV Core-core repulsion = 17143.469954 eV Total energy + Delta-G solvation = -2691.475061 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79283 -38.03298 -36.05266 -34.20598 -31.41312 -29.69764 -28.90706 -28.20298 -27.89319 -26.36786 -24.75827 -22.79395 -21.97517 -20.34517 -19.05367 -18.47014 -17.14289 -16.80885 -16.49432 -15.48125 -15.22437 -14.99776 -14.73326 -14.71242 -14.31152 -14.08296 -13.90257 -13.63850 -13.24923 -13.03264 -12.91372 -12.78110 -12.64068 -12.49566 -12.48298 -12.38313 -12.22634 -12.14712 -11.85659 -11.77027 -11.48762 -11.22335 -11.18403 -11.15275 -10.94508 -10.83648 -10.46529 -8.99440 -8.10983 -6.19844 1.39798 1.41362 1.51870 2.44868 3.12861 3.21625 3.62187 3.75793 3.85189 4.11572 4.14229 4.24253 4.27984 4.42952 4.47621 4.55198 4.58196 4.66280 4.73994 4.81618 4.83459 4.86141 4.87172 4.94140 4.95311 5.01435 5.04401 5.14627 5.15326 5.19097 5.24029 5.29644 5.34779 5.41440 5.45625 5.51147 5.55048 5.62566 5.67453 5.94247 6.02978 6.24095 6.35198 6.38736 6.98663 7.47261 9.00781 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.004432 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.040093 B = 6316.836733 C = 6559.511806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 H 0.048 0.952 4 C 0.048 3.952 5 C -0.529 4.529 6 H 0.057 0.943 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.072 3.928 14 N -0.550 5.550 15 C 0.043 3.957 16 C -0.127 4.127 17 C -0.079 4.079 18 H 0.068 0.932 19 C -0.054 4.054 20 C -0.146 4.146 21 C -0.142 4.142 22 C -0.137 4.137 23 C 0.046 3.954 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.044 0.956 27 H -0.002 1.002 28 H -0.024 1.024 29 H 0.259 0.741 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 2.012 20.172 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.095 4.095 3 H 0.067 0.933 4 C 0.011 3.989 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.056 4.056 14 N -0.275 5.275 15 C -0.085 4.085 16 C -0.165 4.165 17 C -0.098 4.098 18 H 0.086 0.914 19 C -0.055 4.055 20 C -0.203 4.203 21 C -0.199 4.199 22 C -0.195 4.195 23 C -0.081 4.081 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.017 0.983 28 H -0.005 1.005 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.142 1.792 19.547 20.291 hybrid contribution -0.450 0.231 -0.733 0.891 sum 4.692 2.023 18.814 19.495 Atomic orbital electron populations 1.21643 0.94973 1.00924 1.01059 1.21056 0.95389 0.98361 0.94665 0.93316 1.18820 0.95057 0.93299 0.91754 1.21741 1.34063 1.08390 0.92532 0.92508 1.25926 0.95418 0.96085 1.02497 1.70128 1.40519 1.23031 1.23953 0.85564 0.78955 0.78427 0.78795 1.20067 1.20942 1.18724 1.22202 0.87156 0.99718 0.96540 1.63452 1.10371 1.04785 1.48846 1.22870 0.98785 0.90150 0.96663 1.22881 0.99600 0.96769 0.97274 1.22274 0.96747 0.94476 0.96297 0.91363 1.20413 0.96270 0.95674 0.93135 1.22025 0.96816 1.01961 0.99467 1.21886 1.00909 0.95133 1.02012 1.21844 0.97344 0.99733 1.00539 1.23163 0.96374 0.95465 0.93096 0.91786 0.93594 0.93703 0.98323 1.00523 0.93180 0.92611 0.93761 0.92668 0.92773 0.89804 0.90021 0.93052 0.91547 0.92216 0.92957 0.91511 0.93307 0.92219 0.91707 0.92920 0.92488 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 9.07 71.98 0.65 -4.21 16 2 C -0.08 -3.23 2.37 -10.79 -0.03 -3.26 16 3 H 0.05 2.12 7.37 -2.39 -0.02 2.10 16 4 C 0.05 2.64 4.40 29.85 0.13 2.77 16 5 C -0.53 -31.13 8.34 25.60 0.21 -30.92 16 6 H 0.06 3.21 7.08 -2.91 -0.02 3.19 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 8 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 9 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.07 2.58 3.96 86.31 0.34 2.92 16 14 N -0.55 -19.51 4.52 -884.32 -4.00 -23.50 16 15 C 0.04 1.30 6.22 86.56 0.54 1.84 16 16 C -0.13 -2.85 5.22 31.78 0.17 -2.69 16 17 C -0.08 -1.84 2.39 -9.41 -0.02 -1.86 16 18 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 19 C -0.05 -0.97 0.60 -52.18 -0.03 -1.00 16 20 C -0.15 -2.39 7.78 71.98 0.56 -1.83 16 21 C -0.14 -2.51 8.32 71.99 0.60 -1.91 16 22 C -0.14 -2.06 8.27 71.98 0.60 -1.47 16 23 C 0.05 1.33 5.19 86.77 0.45 1.78 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.90 6.83 -2.39 -0.02 1.88 16 26 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.00 -0.10 7.63 -2.39 -0.02 -0.12 16 28 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 29 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.06 2.07 8.01 -2.39 -0.02 2.05 16 31 H 0.04 1.36 7.83 -2.39 -0.02 1.34 16 32 H 0.05 1.61 7.18 -2.38 -0.02 1.59 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.63 5.78 -2.39 -0.01 1.62 16 35 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.05 0.93 6.22 -2.38 -0.01 0.91 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.96 5.96 -2.39 -0.01 0.95 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 0.94 7.46 -2.38 -0.02 0.93 16 42 H 0.06 0.86 7.31 -2.38 -0.02 0.84 16 43 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 1.81 8.07 -2.39 -0.02 1.79 16 46 H 0.06 1.54 5.32 -2.39 -0.01 1.53 16 Total: -1.00 -66.99 342.13 3.85 -63.14 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.90 Total: 11.06 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 4.63 Total: -39.50 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.71 Total: -82.67 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -66.99 3.85 -63.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.594 kcal (2) G-P(sol) polarization free energy of solvation -66.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds