Wall clock time and date at job start Sun Mar 29 2020 23:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46773 * 2 1 4 4 C 1.52994 * 109.46910 * 120.00132 * 2 1 3 5 5 C 1.50709 * 109.46990 * 295.00003 * 4 2 1 6 6 H 1.08000 * 119.99730 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00062 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00237 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99948 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47314 * 89.99881 * 9 7 5 11 11 H 1.48503 * 109.47064 * 210.00084 * 9 7 5 12 12 H 1.48503 * 109.46930 * 330.00058 * 9 7 5 13 13 C 1.53004 * 109.47149 * 239.99801 * 2 1 3 14 14 N 1.46901 * 109.46709 * 177.83121 * 13 2 1 15 15 C 1.47850 * 110.99932 * 284.98307 * 14 13 2 16 16 C 1.54910 * 104.79229 * 213.63937 * 15 14 13 17 17 C 1.55137 * 101.65504 * 37.07214 * 16 15 14 18 18 H 1.09005 * 110.70433 * 82.72544 * 17 16 15 19 19 C 1.53002 * 110.70787 * 205.96116 * 17 16 15 20 20 C 1.52997 * 109.47152 * 173.84835 * 19 17 16 21 21 C 1.53000 * 109.46905 * 293.85107 * 19 17 16 22 22 C 1.53004 * 109.46685 * 53.84938 * 19 17 16 23 23 C 1.47443 * 110.99584 * 164.14571 * 14 13 2 24 24 H 1.09005 * 109.47007 * 56.66877 * 1 2 3 25 25 H 1.08994 * 109.47598 * 296.67219 * 1 2 3 26 26 H 1.08999 * 109.47086 * 176.66691 * 1 2 3 27 27 H 1.08996 * 109.47301 * 54.99792 * 4 2 1 28 28 H 1.08998 * 109.46953 * 175.00114 * 4 2 1 29 29 H 0.96998 * 120.00165 * 179.97438 * 8 7 5 30 30 H 1.08991 * 109.47113 * 297.83234 * 13 2 1 31 31 H 1.08998 * 109.46655 * 57.83503 * 13 2 1 32 32 H 1.08994 * 110.37257 * 332.46577 * 15 14 13 33 33 H 1.08995 * 110.37176 * 94.81364 * 15 14 13 34 34 H 1.08997 * 110.99160 * 278.97915 * 16 15 14 35 35 H 1.09001 * 111.01745 * 155.17764 * 16 15 14 36 36 H 1.08999 * 109.46849 * 60.00539 * 20 19 17 37 37 H 1.08995 * 109.46859 * 179.97438 * 20 19 17 38 38 H 1.09003 * 109.47334 * 300.00261 * 20 19 17 39 39 H 1.09002 * 109.46870 * 60.00111 * 21 19 17 40 40 H 1.08998 * 109.46587 * 179.97438 * 21 19 17 41 41 H 1.08992 * 109.47271 * 299.99533 * 21 19 17 42 42 H 1.09002 * 109.47035 * 53.77106 * 22 19 17 43 43 H 1.09002 * 109.46710 * 173.77020 * 22 19 17 44 44 H 1.08995 * 109.46837 * 293.76855 * 22 19 17 45 45 H 1.08997 * 109.88890 * 242.66650 * 23 14 13 46 46 H 1.09003 * 109.89237 * 3.68494 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 0.0571 2.4766 6 1 1.0799 0.9742 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 1.6456 0.2778 4.7993 9 14 2.9634 -1.9883 3.9028 10 1 4.4168 -1.6850 3.8780 11 1 2.6160 -2.6420 5.1902 12 1 2.6287 -2.8994 2.7789 13 6 2.0401 -0.7213 -1.2492 14 7 3.5081 -0.6760 -1.2756 15 6 3.9899 0.6681 -1.6592 16 6 5.2902 0.4085 -2.4602 17 6 4.9269 -0.8843 -3.2371 18 1 4.3615 -0.6463 -4.1381 19 6 6.1872 -1.6805 -3.5819 20 6 5.7896 -3.0182 -4.2089 21 6 7.0376 -0.8847 -4.5741 22 6 6.9945 -1.9345 -2.3072 23 6 4.0499 -1.6593 -2.2314 24 1 -0.3633 0.5647 -0.8587 25 1 -0.3634 0.4613 0.9182 26 1 -0.3633 -1.0259 -0.0597 27 1 1.6053 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2056 29 1 1.8928 -0.0451 5.6799 30 1 1.7088 -1.7595 -1.2300 31 1 1.6453 -0.2304 -2.1388 32 1 3.2528 1.1711 -2.2850 33 1 4.2037 1.2623 -0.7709 34 1 6.1335 0.2379 -1.7910 35 1 5.4981 1.2304 -3.1453 36 1 5.2145 -2.8372 -5.1169 37 1 6.6874 -3.5852 -4.4549 38 1 5.1837 -3.5851 -3.5020 39 1 7.3208 0.0683 -4.1273 40 1 7.9355 -1.4518 -4.8193 41 1 6.4625 -0.7038 -5.4821 42 1 6.3548 -2.4031 -1.5593 43 1 7.8324 -2.5940 -2.5333 44 1 7.3713 -0.9874 -1.9211 45 1 4.6547 -2.3960 -1.7027 46 1 3.2333 -2.1570 -2.7545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602609646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:58 Heat of formation + Delta-G solvation = -43.207945 kcal Electronic energy + Delta-G solvation = -19970.277135 eV Core-core repulsion = 17278.903627 eV Total energy + Delta-G solvation = -2691.373509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81939 -38.08723 -36.06801 -34.25532 -31.51184 -29.79332 -29.35446 -28.16550 -27.87943 -26.34889 -24.36995 -22.69143 -21.98404 -20.41818 -19.16148 -18.91519 -16.87150 -16.84100 -16.46777 -15.59539 -15.12148 -15.06003 -14.88677 -14.68209 -14.46968 -14.22839 -13.85300 -13.58755 -13.45080 -13.01317 -12.95827 -12.84534 -12.65750 -12.53788 -12.45808 -12.31094 -12.13635 -11.92598 -11.87293 -11.71380 -11.45254 -11.26048 -11.20564 -11.14718 -11.05846 -10.91556 -10.68630 -9.04507 -8.23277 -6.23213 1.36656 1.37298 1.50793 2.40416 3.13081 3.14517 3.62343 3.71495 3.86174 4.08508 4.18092 4.25763 4.30664 4.40632 4.48035 4.53163 4.55242 4.68039 4.73336 4.78325 4.82797 4.85147 4.88569 4.91892 4.96031 5.02550 5.05399 5.12023 5.15695 5.17999 5.20215 5.28662 5.32641 5.37662 5.44487 5.49130 5.56667 5.62283 5.65777 5.75475 5.80828 6.22267 6.31985 6.39532 6.84243 7.40077 8.93760 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.024516 B = 0.005387 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.840392 B = 5196.380104 C = 5715.465156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 H 0.044 0.956 4 C 0.009 3.991 5 C -0.515 4.515 6 H 0.032 0.968 7 C 0.003 3.997 8 N -0.956 5.956 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.251 1.251 13 C 0.069 3.931 14 N -0.547 5.547 15 C 0.042 3.958 16 C -0.120 4.120 17 C -0.088 4.088 18 H 0.079 0.921 19 C -0.054 4.054 20 C -0.141 4.141 21 C -0.137 4.137 22 C -0.147 4.147 23 C 0.044 3.956 24 H 0.061 0.939 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.005 0.995 28 H 0.022 0.978 29 H 0.263 0.737 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.854 -5.199 -22.156 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 H 0.063 0.937 4 C -0.029 4.029 5 C -0.553 4.553 6 H 0.051 0.949 7 C -0.193 4.193 8 N -0.598 5.598 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.175 1.175 13 C -0.059 4.059 14 N -0.271 5.271 15 C -0.085 4.085 16 C -0.158 4.158 17 C -0.107 4.107 18 H 0.097 0.903 19 C -0.055 4.055 20 C -0.198 4.198 21 C -0.195 4.195 22 C -0.204 4.204 23 C -0.083 4.083 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.024 0.976 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.019 -5.333 -21.482 24.296 hybrid contribution -0.260 -0.073 0.251 0.368 sum 9.759 -5.406 -21.231 23.984 Atomic orbital electron populations 1.21649 0.95222 1.01291 1.00651 1.20893 0.95247 0.98332 0.94426 0.93743 1.19377 0.96392 0.94655 0.92450 1.21580 1.33740 1.08453 0.91537 0.94923 1.25918 0.97067 1.00682 0.95594 1.70073 1.49533 1.41589 0.98615 0.85705 0.79202 0.80351 0.77611 1.19681 1.21204 1.17504 1.22296 0.87194 1.00219 0.96228 1.63411 1.08837 1.05404 1.49414 1.23032 0.96704 0.90573 0.98216 1.22848 0.96864 0.97700 0.98410 1.22358 0.96047 0.94823 0.97473 0.90266 1.20411 0.93989 0.95428 0.95631 1.21885 1.01535 0.95958 1.00460 1.21842 0.99434 0.99805 0.98371 1.22026 0.99729 1.01591 0.97079 1.23022 0.97839 0.95242 0.92222 0.91970 0.94526 0.92850 0.97644 0.95965 0.92834 0.91369 0.93885 0.93485 0.92460 0.90632 0.89601 0.92262 0.92007 0.93106 0.92610 0.92130 0.92296 0.93278 0.92084 0.92648 0.90874 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.05 71.98 0.65 -4.23 16 2 C -0.07 -2.82 2.38 -10.79 -0.03 -2.85 16 3 H 0.04 1.91 7.65 -2.39 -0.02 1.89 16 4 C 0.01 0.43 3.45 29.85 0.10 0.53 16 5 C -0.51 -30.75 8.92 25.60 0.23 -30.52 16 6 H 0.03 2.13 7.31 -2.91 -0.02 2.11 16 7 C 0.00 0.18 5.47 84.65 0.46 0.64 16 8 N -0.96 -62.09 13.96 21.45 0.30 -61.79 16 9 Si 0.95 47.14 27.47 68.60 1.88 49.03 16 10 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 12 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 13 C 0.07 2.21 4.10 86.30 0.35 2.56 16 14 N -0.55 -17.14 4.37 -885.55 -3.87 -21.01 16 15 C 0.04 1.19 6.04 86.77 0.52 1.72 16 16 C -0.12 -2.60 5.53 31.98 0.18 -2.42 16 17 C -0.09 -1.72 2.31 -9.61 -0.02 -1.74 16 18 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 19 C -0.05 -0.89 0.57 -52.18 -0.03 -0.92 16 20 C -0.14 -2.13 8.24 71.98 0.59 -1.53 16 21 C -0.14 -1.89 8.32 71.98 0.60 -1.29 16 22 C -0.15 -2.76 7.76 71.98 0.56 -2.20 16 23 C 0.04 1.09 5.23 86.65 0.45 1.54 16 24 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.04 1.59 6.86 -2.39 -0.02 1.57 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.01 0.26 7.20 -2.39 -0.02 0.24 16 28 H 0.02 1.12 6.95 -2.39 -0.02 1.10 16 29 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 30 H 0.07 2.14 7.85 -2.39 -0.02 2.12 16 31 H 0.04 1.22 7.68 -2.39 -0.02 1.20 16 32 H 0.05 1.25 7.52 -2.39 -0.02 1.23 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.73 5.73 -2.39 -0.01 1.71 16 35 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 0.84 7.07 -2.39 -0.02 0.83 16 39 H 0.05 0.78 7.47 -2.39 -0.02 0.77 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.05 1.08 5.95 -2.39 -0.01 1.07 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 44 H 0.05 1.07 6.33 -2.39 -0.02 1.06 16 45 H 0.07 1.91 5.39 -2.39 -0.01 1.90 16 46 H 0.05 1.26 7.46 -2.39 -0.02 1.24 16 Total: -1.00 -67.25 338.05 3.79 -63.46 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.85 Total: 11.03 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 4.63 Total: -40.71 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -3.57 Total: -82.80 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.88 Total: 49.03 kcal Total: -67.25 3.79 -63.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.250 kcal (2) G-P(sol) polarization free energy of solvation -67.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds