Wall clock time and date at job start Sun Mar 29 2020 23:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47051 * 2 1 4 4 C 1.52995 * 109.47487 * 120.00122 * 2 1 3 5 5 C 1.50706 * 109.46917 * 295.00071 * 4 2 1 6 6 H 1.08003 * 119.99829 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00097 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99812 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99839 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47028 * 90.00161 * 9 7 5 11 11 H 1.48503 * 109.46895 * 209.99663 * 9 7 5 12 12 H 1.48499 * 109.46939 * 329.99842 * 9 7 5 13 13 C 1.52999 * 109.47138 * 240.00202 * 2 1 3 14 14 N 1.46901 * 109.47474 * 174.64830 * 13 2 1 15 15 C 1.47440 * 110.99747 * 285.47262 * 14 13 2 16 16 C 1.54324 * 107.23423 * 236.73981 * 15 14 13 17 17 C 1.55137 * 103.01600 * 337.71668 * 16 15 14 18 18 H 1.09009 * 111.02343 * 277.54696 * 17 16 15 19 19 C 1.52995 * 110.99386 * 153.74716 * 17 16 15 20 20 C 1.53006 * 109.46803 * 306.13770 * 19 17 16 21 21 C 1.53001 * 109.47045 * 66.13158 * 19 17 16 22 22 C 1.52997 * 109.47269 * 186.13894 * 19 17 16 23 23 C 1.47845 * 111.00388 * 164.62709 * 14 13 2 24 24 H 1.08992 * 109.47051 * 305.17863 * 1 2 3 25 25 H 1.09001 * 109.47156 * 65.18629 * 1 2 3 26 26 H 1.09001 * 109.46888 * 185.18240 * 1 2 3 27 27 H 1.08995 * 109.47268 * 54.99764 * 4 2 1 28 28 H 1.08992 * 109.47410 * 175.00025 * 4 2 1 29 29 H 0.97001 * 119.99754 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47427 * 54.64241 * 13 2 1 31 31 H 1.09005 * 109.47090 * 294.64695 * 13 2 1 32 32 H 1.09002 * 109.89401 * 356.14404 * 15 14 13 33 33 H 1.09003 * 109.89295 * 117.33176 * 15 14 13 34 34 H 1.09000 * 110.70147 * 219.33256 * 16 15 14 35 35 H 1.08998 * 110.85374 * 96.16606 * 16 15 14 36 36 H 1.09003 * 109.47060 * 63.68541 * 20 19 17 37 37 H 1.09001 * 109.46868 * 183.68322 * 20 19 17 38 38 H 1.09002 * 109.47199 * 303.68514 * 20 19 17 39 39 H 1.09005 * 109.46839 * 60.00972 * 21 19 17 40 40 H 1.09005 * 109.47245 * 180.02562 * 21 19 17 41 41 H 1.08991 * 109.47677 * 300.00543 * 21 19 17 42 42 H 1.08997 * 109.47274 * 60.00470 * 22 19 17 43 43 H 1.09001 * 109.46958 * 179.97438 * 22 19 17 44 44 H 1.09000 * 109.47057 * 299.99166 * 22 19 17 45 45 H 1.08995 * 110.37290 * 265.18960 * 23 14 13 46 46 H 1.08997 * 110.36860 * 27.42594 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0807 0.9746 2.3756 7 6 1.9925 -0.4022 3.7283 8 7 1.6441 0.2768 4.7994 9 14 2.9629 -1.9888 3.9028 10 1 4.4164 -1.6851 3.8792 11 1 2.6148 -2.6429 5.1897 12 1 2.6290 -2.8994 2.7783 13 6 2.0400 -0.7212 -1.2493 14 7 3.5033 -0.6104 -1.3157 15 6 3.9125 0.7461 -1.7235 16 6 4.7884 0.5995 -2.9855 17 6 5.2939 -0.8642 -2.8919 18 1 6.1584 -0.9379 -2.2318 19 6 5.6183 -1.4219 -4.2791 20 6 4.4036 -1.2518 -5.1939 21 6 6.8100 -0.6641 -4.8676 22 6 5.9653 -2.9075 -4.1632 23 6 4.0651 -1.5811 -2.2789 24 1 -0.3633 0.5920 0.8399 25 1 -0.3633 0.4313 -0.9328 26 1 -0.3633 -1.0235 0.0928 27 1 1.6055 -1.7197 1.2951 28 1 3.1263 -0.7994 1.2055 29 1 1.8914 -0.0461 5.6800 30 1 1.6005 -0.2658 -2.1367 31 1 1.7571 -1.7729 -1.2026 32 1 3.0316 1.3465 -1.9512 33 1 4.4876 1.2157 -0.9254 34 1 5.6243 1.2985 -2.9578 35 1 4.1955 0.7454 -3.8884 36 1 4.1964 -0.1902 -5.3290 37 1 4.6113 -1.7075 -6.1620 38 1 3.5380 -1.7364 -4.7423 39 1 7.6753 -0.7853 -4.2160 40 1 7.0408 -1.0611 -5.8562 41 1 6.5628 0.3942 -4.9502 42 1 5.1162 -3.4474 -3.7441 43 1 6.1959 -3.3049 -5.1516 44 1 6.8306 -3.0287 -3.5116 45 1 4.3742 -2.4908 -1.7643 46 1 3.3341 -1.8136 -3.0533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602609648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:03 Heat of formation + Delta-G solvation = -43.853133 kcal Electronic energy + Delta-G solvation = -19915.591402 eV Core-core repulsion = 17224.189916 eV Total energy + Delta-G solvation = -2691.401486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82246 -38.08481 -36.08397 -34.26465 -31.49498 -29.83302 -29.34469 -28.20544 -27.89176 -26.34193 -24.37918 -22.80129 -21.94068 -20.35903 -19.13617 -18.81593 -17.19262 -16.81406 -16.35197 -15.42239 -15.29430 -15.11779 -14.86396 -14.63350 -14.39257 -14.19041 -14.09759 -13.67939 -13.40136 -13.04022 -12.95751 -12.87062 -12.64039 -12.49496 -12.47931 -12.31700 -12.18615 -11.97144 -11.77893 -11.74705 -11.47377 -11.23399 -11.20888 -11.15299 -11.09235 -10.92168 -10.69200 -9.04733 -8.23852 -6.23950 1.36249 1.36976 1.50271 2.39921 3.11227 3.12773 3.62206 3.75288 3.84772 4.09224 4.13126 4.22971 4.26657 4.40921 4.47278 4.52297 4.56213 4.65938 4.73338 4.79679 4.83395 4.85944 4.87941 4.90532 4.94716 5.00159 5.04763 5.13397 5.14804 5.16889 5.20319 5.24483 5.33751 5.37373 5.41832 5.47428 5.54582 5.60678 5.62656 5.74280 5.79978 6.21755 6.31501 6.38959 6.83500 7.39418 8.93216 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.005036 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.296921 B = 5558.294943 C = 5974.372509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 H 0.045 0.955 4 C 0.008 3.992 5 C -0.515 4.515 6 H 0.033 0.967 7 C 0.003 3.997 8 N -0.956 5.956 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.251 1.251 13 C 0.070 3.930 14 N -0.549 5.549 15 C 0.042 3.958 16 C -0.130 4.130 17 C -0.080 4.080 18 H 0.071 0.929 19 C -0.054 4.054 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.142 4.142 23 C 0.046 3.954 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.006 0.994 28 H 0.020 0.980 29 H 0.263 0.737 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.505 -4.728 -23.630 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 H 0.063 0.937 4 C -0.030 4.030 5 C -0.553 4.553 6 H 0.051 0.949 7 C -0.193 4.193 8 N -0.598 5.598 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.175 1.175 13 C -0.058 4.058 14 N -0.274 5.274 15 C -0.086 4.086 16 C -0.168 4.168 17 C -0.099 4.099 18 H 0.089 0.911 19 C -0.055 4.055 20 C -0.203 4.203 21 C -0.196 4.196 22 C -0.199 4.199 23 C -0.081 4.081 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.689 -4.840 -22.953 25.016 hybrid contribution -0.156 -0.103 0.366 0.411 sum 8.533 -4.944 -22.587 24.646 Atomic orbital electron populations 1.21627 0.95142 1.01275 1.00536 1.20913 0.95265 0.98378 0.94372 0.93671 1.19399 0.96259 0.94721 0.92573 1.21573 1.33822 1.08433 0.91515 0.94917 1.25927 0.97053 1.00712 0.95593 1.70076 1.49481 1.41614 0.98620 0.85701 0.79162 0.80317 0.77659 1.19737 1.21129 1.17485 1.22243 0.87098 1.00257 0.96237 1.63380 1.10351 1.04734 1.48896 1.22797 0.98764 0.90322 0.96714 1.22902 0.99584 0.96938 0.97337 1.22285 0.96977 0.94335 0.96292 0.91052 1.20407 0.96163 0.95684 0.93228 1.22033 0.97139 1.01941 0.99208 1.21847 0.96829 1.00115 1.00764 1.21885 1.01322 0.94719 1.02006 1.23190 0.96208 0.95525 0.93219 0.94673 0.91706 0.93107 0.97532 0.96197 0.92816 0.93697 0.91446 0.92980 0.92631 0.90244 0.89872 0.92198 0.91767 0.92921 0.92883 0.91840 0.92419 0.92973 0.91729 0.92885 0.91641 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 8.92 71.98 0.64 -4.14 16 2 C -0.07 -2.83 2.37 -10.80 -0.03 -2.86 16 3 H 0.04 1.94 7.38 -2.39 -0.02 1.92 16 4 C 0.01 0.39 3.46 29.85 0.10 0.49 16 5 C -0.52 -30.83 9.03 25.60 0.23 -30.60 16 6 H 0.03 2.14 7.31 -2.91 -0.02 2.11 16 7 C 0.00 0.17 5.47 84.66 0.46 0.63 16 8 N -0.96 -62.16 13.96 21.45 0.30 -61.86 16 9 Si 0.95 47.20 27.47 68.60 1.88 49.09 16 10 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.25 -11.82 6.54 99.48 0.65 -11.17 16 13 C 0.07 2.24 3.96 86.30 0.34 2.58 16 14 N -0.55 -17.30 4.51 -885.53 -4.00 -21.29 16 15 C 0.04 1.18 6.20 86.65 0.54 1.72 16 16 C -0.13 -2.67 5.44 31.78 0.17 -2.50 16 17 C -0.08 -1.64 2.39 -9.41 -0.02 -1.67 16 18 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 19 C -0.05 -0.85 0.60 -52.18 -0.03 -0.89 16 20 C -0.15 -2.14 7.80 71.98 0.56 -1.58 16 21 C -0.14 -1.90 8.32 71.98 0.60 -1.30 16 22 C -0.14 -2.17 8.27 71.98 0.60 -1.57 16 23 C 0.05 1.13 4.98 86.77 0.43 1.56 16 24 H 0.03 1.50 7.11 -2.39 -0.02 1.48 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.01 0.32 7.20 -2.39 -0.02 0.30 16 28 H 0.02 1.01 7.06 -2.39 -0.02 0.99 16 29 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 30 H 0.04 1.25 7.81 -2.39 -0.02 1.23 16 31 H 0.07 2.13 8.01 -2.38 -0.02 2.11 16 32 H 0.05 1.46 7.15 -2.39 -0.02 1.44 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 35 H 0.08 1.51 5.67 -2.39 -0.01 1.50 16 36 H 0.06 0.86 6.20 -2.39 -0.01 0.84 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.85 5.96 -2.39 -0.01 0.83 16 39 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.06 0.78 7.49 -2.39 -0.02 0.76 16 42 H 0.05 0.85 7.27 -2.39 -0.02 0.83 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 1.72 8.04 -2.39 -0.02 1.71 16 46 H 0.06 1.33 5.42 -2.39 -0.01 1.32 16 Total: -1.00 -67.57 338.70 3.63 -63.94 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.85 Total: 10.24 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 4.60 Total: -40.12 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -3.70 Total: -83.15 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.88 Total: 49.09 kcal Total: -67.57 3.63 -63.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.087 kcal (2) G-P(sol) polarization free energy of solvation -67.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds