Wall clock time and date at job start Sun Mar 29 2020 23:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 C 1.52993 * 109.47262 * 120.00193 * 2 1 3 5 5 H 1.09005 * 109.53624 * 300.09712 * 4 2 1 6 6 C 1.53122 * 109.50726 * 60.19310 * 4 2 1 7 7 C 1.53121 * 109.16187 * 177.59499 * 6 4 2 8 8 C 1.53033 * 109.27844 * 302.34863 * 7 6 4 9 9 N 1.46845 * 109.52672 * 59.18067 * 8 7 6 10 10 C 1.46900 * 111.00157 * 174.16391 * 9 8 7 11 11 C 1.53002 * 109.46619 * 294.20576 * 10 9 8 12 12 H 1.09002 * 109.47070 * 55.00278 * 11 10 9 13 13 C 1.53000 * 109.47233 * 294.99903 * 11 10 9 14 14 C 1.52997 * 109.46817 * 175.00098 * 11 10 9 15 15 C 1.50705 * 109.47390 * 184.99865 * 14 11 10 16 16 H 1.08000 * 119.99498 * 0.02562 * 15 14 11 17 17 C 1.37870 * 120.00441 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99840 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47080 * 89.99765 * 19 17 15 21 21 H 1.48497 * 109.46846 * 209.99784 * 19 17 15 22 22 H 1.48499 * 109.47093 * 329.99702 * 19 17 15 23 23 C 1.46853 * 111.19599 * 298.25765 * 9 8 7 24 24 H 1.09001 * 109.46706 * 299.99726 * 1 2 3 25 25 H 1.08992 * 109.47067 * 59.99994 * 1 2 3 26 26 H 1.09001 * 109.47151 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46478 * 239.99786 * 2 1 3 28 28 H 1.08995 * 109.47230 * 60.00119 * 3 2 1 29 29 H 1.09007 * 109.47106 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47004 * 299.99849 * 3 2 1 31 31 H 1.08995 * 109.52521 * 297.50108 * 6 4 2 32 32 H 1.09002 * 109.51788 * 57.62548 * 6 4 2 33 33 H 1.08999 * 109.50210 * 62.28886 * 7 6 4 34 34 H 1.09003 * 109.50002 * 182.36753 * 7 6 4 35 35 H 1.09007 * 109.46303 * 299.16367 * 8 7 6 36 36 H 1.09001 * 109.46392 * 179.19928 * 8 7 6 37 37 H 1.09000 * 109.47154 * 174.20942 * 10 9 8 38 38 H 1.08996 * 109.47574 * 54.20485 * 10 9 8 39 39 H 1.09004 * 109.46724 * 60.00652 * 13 11 10 40 40 H 1.09001 * 109.47194 * 179.97438 * 13 11 10 41 41 H 1.08992 * 109.47399 * 300.00166 * 13 11 10 42 42 H 1.09001 * 109.47630 * 305.00128 * 14 11 10 43 43 H 1.09004 * 109.47346 * 65.00258 * 14 11 10 44 44 H 0.97002 * 119.99729 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.46110 * 181.75531 * 23 9 8 46 46 H 1.09001 * 109.46177 * 301.73745 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6759 -0.2093 2.1399 6 6 1.5341 -2.1665 1.2475 7 6 2.0979 -2.8977 2.4690 8 6 3.6266 -2.8350 2.4343 9 7 4.0605 -1.4322 2.4380 10 6 5.5223 -1.3335 2.5447 11 6 5.9708 -1.8626 3.9085 12 1 5.5922 -2.8752 4.0478 13 6 5.4223 -0.9565 5.0126 14 6 7.4994 -1.8763 3.9725 15 6 7.9425 -2.5107 5.2657 16 1 7.2072 -2.8688 5.9711 17 6 9.2862 -2.6341 5.5482 18 7 10.1815 -2.1986 4.6889 19 14 9.8353 -3.4212 7.1509 20 1 9.9962 -4.8844 6.9541 21 1 11.1319 -2.8329 7.5725 22 1 8.8142 -3.1721 8.1999 23 6 3.5704 -0.7217 1.2499 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 0.4450 -2.1712 1.2908 32 1 1.8647 -2.6670 0.3374 33 1 1.7347 -2.4200 3.3788 34 1 1.7753 -3.9388 2.4508 35 1 3.9898 -3.3251 1.5309 36 1 4.0309 -3.3426 3.3101 37 1 5.8246 -0.2913 2.4420 38 1 5.9851 -1.9255 1.7552 39 1 4.3333 -0.9468 4.9670 40 1 5.7415 -1.3337 5.9842 41 1 5.8009 0.0560 4.8733 42 1 7.8932 -2.4494 3.1330 43 1 7.8744 -0.8540 3.9222 44 1 11.1270 -2.2858 4.8875 45 1 3.9339 0.3058 1.2656 46 1 3.9337 -1.2218 0.3521 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602629772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:07 Heat of formation + Delta-G solvation = -41.119656 kcal Electronic energy + Delta-G solvation = -19637.998723 eV Core-core repulsion = 16946.715769 eV Total energy + Delta-G solvation = -2691.282954 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.45200 -36.57481 -34.53209 -32.66193 -31.49907 -29.55752 -27.60773 -26.80735 -25.74333 -23.73183 -23.16193 -21.94262 -20.22668 -19.62239 -18.63999 -16.44131 -15.74967 -15.16427 -14.65895 -14.47179 -14.25819 -13.97841 -13.89374 -13.56291 -13.19382 -12.79951 -12.62804 -12.40673 -12.14582 -12.05120 -11.58481 -11.41604 -11.30231 -11.18709 -10.99682 -10.86565 -10.82245 -10.68941 -10.53522 -10.35768 -10.25070 -10.02793 -9.99583 -9.50710 -9.07371 -8.89327 -8.29601 -7.90437 -5.94608 -3.95482 3.34865 3.41095 3.44696 4.16608 4.50916 4.63515 4.75577 4.78606 5.03635 5.15076 5.22137 5.39599 5.41381 5.47728 5.49292 5.58960 5.62229 5.69858 5.74002 5.79733 5.82759 5.84210 5.95992 5.97338 6.02334 6.07159 6.09746 6.18857 6.26114 6.27476 6.36179 6.46897 6.49378 6.62771 6.76978 7.07946 7.21536 7.26740 7.51221 7.54021 7.73645 7.90149 8.06118 8.50512 9.11007 9.67726 11.17002 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.042012 B = 0.003961 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.317066 B = 7068.017649 C = 7376.682285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.078 4.078 5 H 0.077 0.923 6 C -0.115 4.115 7 C -0.116 4.116 8 C 0.052 3.948 9 N -0.534 5.534 10 C 0.062 3.938 11 C -0.081 4.081 12 H 0.056 0.944 13 C -0.121 4.121 14 C 0.027 3.973 15 C -0.511 4.511 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.059 3.941 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.011 0.989 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.073 0.927 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.450 3.204 -9.175 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.097 4.097 5 H 0.096 0.904 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.076 4.076 9 N -0.258 5.258 10 C -0.066 4.066 11 C -0.100 4.100 12 H 0.074 0.926 13 C -0.179 4.179 14 C -0.011 4.011 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.069 4.069 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.030 0.970 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -18.456 3.452 -8.786 20.730 hybrid contribution 0.903 -0.831 0.072 1.229 sum -17.553 2.621 -8.714 19.772 Atomic orbital electron populations 1.21871 0.95391 1.01679 1.01463 1.21123 0.95586 0.96221 0.98108 1.21892 1.01397 0.95894 1.01485 1.21225 0.94930 0.95654 0.97892 0.90419 1.21674 0.99951 0.95449 0.98208 1.21580 0.95374 0.99748 0.98666 1.22123 0.95018 0.89505 1.00938 1.61939 1.12474 1.12911 1.38492 1.22291 0.85002 1.00750 0.98512 1.21225 0.98916 0.97989 0.91835 0.92615 1.21568 0.98746 0.98656 0.98905 1.19130 0.88067 0.97074 0.96805 1.21242 0.91460 1.38471 1.03747 0.92593 1.25019 0.96972 0.95843 0.96744 1.69970 1.00929 1.47295 1.35551 0.86636 0.78049 0.79437 0.84145 1.20787 1.21325 1.19876 1.22157 0.94558 0.98895 0.91262 0.92716 0.93072 0.92523 0.91577 0.92585 0.92304 0.93092 0.91973 0.92624 0.91242 0.92011 0.95566 0.90002 0.91448 0.95563 0.93930 0.92890 0.94284 0.97028 0.96619 0.93144 0.90844 0.95631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.85 37.16 0.33 -0.85 16 2 C -0.09 -0.84 2.51 -90.62 -0.23 -1.07 16 3 C -0.15 -1.34 8.84 37.15 0.33 -1.01 16 4 C -0.08 -0.85 1.94 -90.54 -0.18 -1.03 16 5 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.12 -1.20 4.86 -26.61 -0.13 -1.33 16 7 C -0.12 -1.36 6.09 -26.65 -0.16 -1.52 16 8 C 0.05 0.75 5.30 -3.84 -0.02 0.73 16 9 N -0.53 -8.20 4.11 -234.67 -0.96 -9.17 16 10 C 0.06 1.11 4.35 -3.82 -0.02 1.09 16 11 C -0.08 -1.69 2.26 -90.62 -0.20 -1.90 16 12 H 0.06 1.18 6.22 -51.93 -0.32 0.86 16 13 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 15 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 16 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 23 C 0.06 0.77 4.36 -3.83 -0.02 0.76 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.44 6.49 -51.93 -0.34 0.10 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 6.45 -51.92 -0.34 0.22 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.57 6.58 -51.93 -0.34 0.23 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 1.29 6.12 -51.93 -0.32 0.97 16 37 H 0.07 1.21 7.99 -51.93 -0.41 0.80 16 38 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 40 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.07 0.95 6.35 -51.93 -0.33 0.62 16 46 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -29.35 343.20 -9.56 -38.91 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -9.01 Total: -4.33 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -0.48 Total: -20.93 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.23 Total: -35.72 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.35 -9.56 -38.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602629772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.208 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds