Wall clock time and date at job start Sun Mar 29 2020 23:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 C 1.52998 * 109.47444 * 120.00338 * 2 1 3 5 5 H 1.08997 * 112.78729 * 305.48625 * 4 2 1 6 6 N 1.47483 * 113.47779 * 174.67139 * 4 2 1 7 7 C 1.46897 * 110.99783 * 106.53101 * 6 4 2 8 8 C 1.53000 * 109.47013 * 187.49861 * 7 6 4 9 9 H 1.09002 * 109.46933 * 305.00079 * 8 7 6 10 10 C 1.53003 * 109.47123 * 65.00024 * 8 7 6 11 11 C 1.52997 * 109.47144 * 184.99712 * 8 7 6 12 12 C 1.50700 * 109.47293 * 175.00179 * 11 8 7 13 13 H 1.08003 * 119.99704 * 0.02562 * 12 11 8 14 14 C 1.37879 * 120.00206 * 180.02562 * 12 11 8 15 15 N 1.31509 * 119.99790 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99760 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47030 * 89.99992 * 16 14 12 18 18 H 1.48508 * 109.46923 * 209.99489 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99408 * 16 14 12 20 20 C 1.47477 * 87.83493 * 218.22617 * 6 4 2 21 21 C 1.53504 * 87.93640 * 27.00923 * 20 6 4 22 22 C 1.53004 * 114.16947 * 87.62279 * 21 20 6 23 23 C 1.53003 * 114.17505 * 220.13720 * 21 20 6 24 24 H 1.09003 * 109.46773 * 299.99698 * 1 2 3 25 25 H 1.08996 * 109.47453 * 59.99453 * 1 2 3 26 26 H 1.09000 * 109.47240 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46773 * 240.00302 * 2 1 3 28 28 H 1.08999 * 109.46910 * 185.15771 * 3 2 1 29 29 H 1.08999 * 109.47411 * 305.15772 * 3 2 1 30 30 H 1.08995 * 109.46845 * 65.16378 * 3 2 1 31 31 H 1.09000 * 109.47293 * 67.49525 * 7 6 4 32 32 H 1.09001 * 109.47153 * 307.49613 * 7 6 4 33 33 H 1.09000 * 109.47222 * 59.99661 * 10 8 7 34 34 H 1.08997 * 109.47398 * 180.02562 * 10 8 7 35 35 H 1.08997 * 109.46900 * 300.00153 * 10 8 7 36 36 H 1.08997 * 109.47780 * 295.00211 * 11 8 7 37 37 H 1.09003 * 109.46784 * 55.00170 * 11 8 7 38 38 H 0.96999 * 119.99847 * 180.02562 * 15 14 12 39 39 H 1.09001 * 113.47588 * 141.78425 * 20 6 4 40 40 H 1.09001 * 113.47218 * 272.24326 * 20 6 4 41 41 H 1.09001 * 109.46875 * 67.05221 * 22 21 20 42 42 H 1.08998 * 109.47093 * 187.05189 * 22 21 20 43 43 H 1.09006 * 109.47011 * 307.05238 * 22 21 20 44 44 H 1.09002 * 109.46566 * 40.49527 * 23 21 20 45 45 H 1.08997 * 109.47169 * 160.49508 * 23 21 20 46 46 H 1.08995 * 109.47254 * 280.49752 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6309 -0.3090 2.1714 6 7 3.5058 -0.8826 1.2772 7 6 4.1174 0.0318 2.2507 8 6 5.6406 -0.0287 2.1201 9 1 5.9735 -1.0613 2.2250 10 6 6.0564 0.5043 0.7474 11 6 6.2808 0.8273 3.2147 12 6 7.7788 0.6708 3.1632 13 1 8.2292 0.0256 2.4234 14 6 8.5743 1.3512 4.0606 15 7 8.0258 2.1372 4.9611 16 14 10.4310 1.1566 3.9972 17 1 11.0056 2.1824 3.0902 18 1 10.9938 1.3302 5.3605 19 1 10.7698 -0.1976 3.4906 20 6 3.2916 -2.2169 1.8675 21 6 1.9294 -2.2499 1.1608 22 6 1.9771 -2.8000 -0.2662 23 6 0.8013 -2.8503 2.0022 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1260 1.4439 -0.0924 29 1 1.6032 1.9823 -0.8402 30 1 1.7541 1.9289 0.9326 31 1 3.8272 -0.2636 3.2589 32 1 3.7764 1.0490 2.0578 33 1 5.7235 1.5368 0.6425 34 1 7.1415 0.4607 0.6541 35 1 5.6003 -0.1055 -0.0324 36 1 6.0193 1.8737 3.0574 37 1 5.9149 0.5040 4.1893 38 1 8.5855 2.6162 5.5922 39 1 3.9891 -2.9706 1.5018 40 1 3.2165 -2.2037 2.9549 41 1 2.2329 -3.8592 -0.2388 42 1 1.0023 -2.6736 -0.7371 43 1 2.7303 -2.2589 -0.8391 44 1 0.8943 -2.5068 3.0324 45 1 -0.1606 -2.5338 1.5990 46 1 0.8668 -3.9379 1.9745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602670521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:31 Heat of formation + Delta-G solvation = -4.673608 kcal Electronic energy + Delta-G solvation = -20026.573135 eV Core-core repulsion = 17336.870600 eV Total energy + Delta-G solvation = -2689.702534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84300 -35.66865 -34.42087 -32.80882 -31.51483 -27.57140 -27.18197 -26.95558 -26.22242 -25.51707 -23.64583 -21.49618 -20.37147 -18.92781 -18.02479 -16.34412 -15.58020 -15.37420 -14.95558 -14.44155 -14.31456 -13.80223 -13.32981 -12.98210 -12.78000 -12.73762 -12.46350 -12.28872 -12.18010 -12.08831 -11.96481 -11.64907 -11.37039 -11.26552 -11.14521 -10.84486 -10.76644 -10.62059 -10.50168 -10.43322 -10.21719 -10.08346 -9.71563 -9.54762 -9.04814 -8.89429 -8.44693 -8.29713 -5.94546 -3.95291 3.34990 3.41055 3.44710 4.20355 4.33192 4.51081 4.72023 5.05598 5.12936 5.15435 5.23801 5.33546 5.41338 5.48709 5.56829 5.60326 5.66008 5.70067 5.78504 5.82883 5.87461 5.90605 5.93271 5.95100 6.00704 6.13324 6.14818 6.21401 6.24107 6.30218 6.38797 6.48010 6.51999 6.56802 6.72759 6.86807 7.11831 7.26597 7.27828 7.51064 7.73541 7.90051 8.06221 8.50935 9.11166 9.67897 11.17084 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.004588 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.758323 B = 6100.832060 C = 6372.975482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.147 4.147 4 C 0.040 3.960 5 H 0.070 0.930 6 N -0.457 5.457 7 C 0.026 3.974 8 C -0.074 4.074 9 H 0.053 0.947 10 C -0.121 4.121 11 C 0.027 3.973 12 C -0.510 4.510 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.006 3.994 21 C -0.091 4.091 22 C -0.119 4.119 23 C -0.135 4.135 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.014 0.986 37 H 0.011 0.989 38 H 0.259 0.741 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.019 -7.488 -9.091 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.070 4.070 5 H 0.088 0.912 6 N -0.179 5.179 7 C -0.102 4.102 8 C -0.093 4.093 9 H 0.071 0.929 10 C -0.179 4.179 11 C -0.011 4.011 12 C -0.549 4.549 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.123 4.123 21 C -0.091 4.091 22 C -0.176 4.176 23 C -0.193 4.193 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.533 -7.253 -9.533 19.615 hybrid contribution 0.710 0.079 1.104 1.315 sum -14.823 -7.174 -8.429 18.499 Atomic orbital electron populations 1.21829 0.95698 1.01384 1.01351 1.20996 0.94524 0.96220 0.97952 1.21810 1.02201 0.95538 1.00850 1.23498 0.91138 0.94437 0.97926 0.91194 1.68842 1.08331 1.02237 1.38443 1.22875 0.97743 0.96742 0.92871 1.21066 0.90867 1.00122 0.97202 0.92873 1.21573 1.00833 0.99157 0.96308 1.19133 0.95061 0.94533 0.92358 1.21244 0.91785 1.26455 1.15387 0.92612 1.25016 0.98497 0.95470 0.95562 1.69968 1.35107 1.29592 1.19116 0.86641 0.86040 0.78463 0.77151 1.20727 1.21334 1.19914 1.23932 0.96048 0.94441 0.97872 1.22039 0.95205 0.95352 0.96552 1.21482 1.01760 1.00169 0.94152 1.21722 0.97766 1.00613 0.99190 0.93068 0.92921 0.92758 0.90259 0.91596 0.93329 0.93349 0.94637 0.91422 0.94422 0.92871 0.93940 0.96728 0.97094 0.93157 0.90153 0.91628 0.92879 0.92755 0.91206 0.92745 0.92473 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.13 37.16 0.34 -1.02 16 2 C -0.08 -0.89 2.44 -90.62 -0.22 -1.11 16 3 C -0.15 -1.81 8.35 37.16 0.31 -1.50 16 4 C 0.04 0.49 1.87 -71.44 -0.13 0.36 16 5 H 0.07 0.92 7.88 -51.93 -0.41 0.52 16 6 N -0.46 -6.85 5.17 -236.44 -1.22 -8.08 16 7 C 0.03 0.46 4.11 -3.83 -0.02 0.44 16 8 C -0.07 -1.56 2.54 -90.62 -0.23 -1.79 16 9 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 10 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 11 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 12 C -0.51 -14.59 8.41 -34.44 -0.29 -14.88 16 13 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 16 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.01 0.08 6.86 -7.56 -0.05 0.03 16 21 C -0.09 -1.01 1.21 -153.98 -0.19 -1.19 16 22 C -0.12 -1.20 7.83 37.16 0.29 -0.91 16 23 C -0.14 -1.28 9.25 37.16 0.34 -0.94 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.47 6.75 -51.93 -0.35 0.12 16 27 H 0.08 0.93 6.11 -51.93 -0.32 0.61 16 28 H 0.06 0.94 7.78 -51.93 -0.40 0.54 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.65 7.35 -51.93 -0.38 0.27 16 32 H 0.07 1.22 7.08 -51.93 -0.37 0.86 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 35 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 40 H 0.07 0.91 7.33 -51.93 -0.38 0.53 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.49 7.62 -51.93 -0.40 0.09 16 43 H 0.07 0.80 6.97 -51.93 -0.36 0.44 16 44 H 0.05 0.53 8.03 -51.93 -0.42 0.12 16 45 H 0.06 0.49 7.41 -51.93 -0.38 0.10 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -29.52 350.03 -9.06 -38.57 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -9.09 Total: -3.60 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 0.26 Total: -22.53 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: -0.49 Total: -34.73 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.52 -9.06 -38.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602670521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.901 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds