Wall clock time and date at job start Sun Mar 29 2020 23:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 C 1.52998 * 109.47444 * 120.00338 * 2 1 3 5 5 H 1.08997 * 112.78729 * 305.48625 * 4 2 1 6 6 N 1.47483 * 113.47779 * 174.67139 * 4 2 1 7 7 C 1.46897 * 110.99783 * 106.53101 * 6 4 2 8 8 C 1.53000 * 109.47013 * 187.49861 * 7 6 4 9 9 H 1.09002 * 109.46933 * 305.00079 * 8 7 6 10 10 C 1.53003 * 109.47123 * 65.00024 * 8 7 6 11 11 C 1.52997 * 109.47144 * 184.99712 * 8 7 6 12 12 C 1.50700 * 109.47293 * 175.00179 * 11 8 7 13 13 H 1.08003 * 119.99704 * 0.02562 * 12 11 8 14 14 C 1.37879 * 120.00206 * 180.02562 * 12 11 8 15 15 N 1.31509 * 119.99790 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99760 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47030 * 89.99992 * 16 14 12 18 18 H 1.48508 * 109.46923 * 209.99489 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99408 * 16 14 12 20 20 C 1.47477 * 87.83493 * 218.22617 * 6 4 2 21 21 C 1.53504 * 87.93640 * 27.00923 * 20 6 4 22 22 C 1.53004 * 114.16947 * 87.62279 * 21 20 6 23 23 C 1.53003 * 114.17505 * 220.13720 * 21 20 6 24 24 H 1.09003 * 109.46773 * 299.99698 * 1 2 3 25 25 H 1.08996 * 109.47453 * 59.99453 * 1 2 3 26 26 H 1.09000 * 109.47240 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46773 * 240.00302 * 2 1 3 28 28 H 1.08999 * 109.46910 * 185.15771 * 3 2 1 29 29 H 1.08999 * 109.47411 * 305.15772 * 3 2 1 30 30 H 1.08995 * 109.46845 * 65.16378 * 3 2 1 31 31 H 1.09000 * 109.47293 * 67.49525 * 7 6 4 32 32 H 1.09001 * 109.47153 * 307.49613 * 7 6 4 33 33 H 1.09000 * 109.47222 * 59.99661 * 10 8 7 34 34 H 1.08997 * 109.47398 * 180.02562 * 10 8 7 35 35 H 1.08997 * 109.46900 * 300.00153 * 10 8 7 36 36 H 1.08997 * 109.47780 * 295.00211 * 11 8 7 37 37 H 1.09003 * 109.46784 * 55.00170 * 11 8 7 38 38 H 0.96999 * 119.99847 * 180.02562 * 15 14 12 39 39 H 1.09001 * 113.47588 * 141.78425 * 20 6 4 40 40 H 1.09001 * 113.47218 * 272.24326 * 20 6 4 41 41 H 1.09001 * 109.46875 * 67.05221 * 22 21 20 42 42 H 1.08998 * 109.47093 * 187.05189 * 22 21 20 43 43 H 1.09006 * 109.47011 * 307.05238 * 22 21 20 44 44 H 1.09002 * 109.46566 * 40.49527 * 23 21 20 45 45 H 1.08997 * 109.47169 * 160.49508 * 23 21 20 46 46 H 1.08995 * 109.47254 * 280.49752 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6309 -0.3090 2.1714 6 7 3.5058 -0.8826 1.2772 7 6 4.1174 0.0318 2.2507 8 6 5.6406 -0.0287 2.1201 9 1 5.9735 -1.0613 2.2250 10 6 6.0564 0.5043 0.7474 11 6 6.2808 0.8273 3.2147 12 6 7.7788 0.6708 3.1632 13 1 8.2292 0.0256 2.4234 14 6 8.5743 1.3512 4.0606 15 7 8.0258 2.1372 4.9611 16 14 10.4310 1.1566 3.9972 17 1 11.0056 2.1824 3.0902 18 1 10.9938 1.3302 5.3605 19 1 10.7698 -0.1976 3.4906 20 6 3.2916 -2.2169 1.8675 21 6 1.9294 -2.2499 1.1608 22 6 1.9771 -2.8000 -0.2662 23 6 0.8013 -2.8503 2.0022 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1260 1.4439 -0.0924 29 1 1.6032 1.9823 -0.8402 30 1 1.7541 1.9289 0.9326 31 1 3.8272 -0.2636 3.2589 32 1 3.7764 1.0490 2.0578 33 1 5.7235 1.5368 0.6425 34 1 7.1415 0.4607 0.6541 35 1 5.6003 -0.1055 -0.0324 36 1 6.0193 1.8737 3.0574 37 1 5.9149 0.5040 4.1893 38 1 8.5855 2.6162 5.5922 39 1 3.9891 -2.9706 1.5018 40 1 3.2165 -2.2037 2.9549 41 1 2.2329 -3.8592 -0.2388 42 1 1.0023 -2.6736 -0.7371 43 1 2.7303 -2.2589 -0.8391 44 1 0.8943 -2.5068 3.0324 45 1 -0.1606 -2.5338 1.5990 46 1 0.8668 -3.9379 1.9745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602670521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:30 Heat of formation + Delta-G solvation = -20.968900 kcal Electronic energy + Delta-G solvation = -20027.279752 eV Core-core repulsion = 17336.870600 eV Total energy + Delta-G solvation = -2690.409151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.92003 -37.36734 -35.42755 -34.61635 -33.00879 -29.12020 -28.34157 -27.83255 -27.71811 -26.55198 -25.49281 -23.01632 -21.32879 -20.59525 -19.06894 -18.47615 -16.82807 -16.59518 -16.37149 -15.94627 -15.43394 -15.24982 -14.76848 -14.41068 -13.92034 -13.85865 -13.62966 -13.51191 -13.43203 -13.20159 -12.94740 -12.91594 -12.83041 -12.74517 -12.57390 -12.33636 -12.17653 -12.13144 -11.92736 -11.73853 -11.58028 -11.38777 -11.28706 -11.08492 -10.72406 -10.63695 -10.55370 -9.68174 -8.19148 -6.28611 1.38402 1.39753 1.50786 2.40594 3.09136 3.14036 3.36920 3.75329 3.99450 4.14463 4.17609 4.22991 4.29862 4.37397 4.46785 4.53689 4.57745 4.69912 4.72969 4.84491 4.85313 4.86917 4.90039 4.92756 4.98732 5.06115 5.07898 5.13149 5.15530 5.22440 5.24117 5.30596 5.36814 5.43500 5.44728 5.46342 5.52906 5.56975 5.58416 5.69645 5.82383 5.87281 6.20147 6.32238 6.86744 7.39695 8.93043 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.004588 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.758323 B = 6100.832060 C = 6372.975482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.145 4.145 4 C 0.038 3.962 5 H 0.063 0.937 6 N -0.464 5.464 7 C 0.041 3.959 8 C -0.064 4.064 9 H 0.045 0.955 10 C -0.109 4.109 11 C 0.034 3.966 12 C -0.529 4.529 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.962 3.038 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.264 1.264 20 C -0.003 4.003 21 C -0.074 4.074 22 C -0.116 4.116 23 C -0.133 4.133 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.025 0.975 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.063 0.937 36 H -0.012 1.012 37 H -0.017 1.017 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.852 -8.737 -10.539 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.093 4.093 3 C -0.203 4.203 4 C -0.071 4.071 5 H 0.081 0.919 6 N -0.186 5.186 7 C -0.088 4.088 8 C -0.083 4.083 9 H 0.064 0.936 10 C -0.166 4.166 11 C -0.004 4.004 12 C -0.567 4.567 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.786 3.214 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.188 1.188 20 C -0.132 4.132 21 C -0.074 4.074 22 C -0.173 4.173 23 C -0.190 4.190 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.007 0.993 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.378 -8.512 -10.994 21.484 hybrid contribution 0.940 0.477 1.569 1.890 sum -15.438 -8.036 -9.425 19.792 Atomic orbital electron populations 1.21783 0.93716 1.02363 1.01859 1.20992 0.96087 0.95127 0.97134 1.21792 1.00711 0.96651 1.01130 1.23575 0.89131 0.96053 0.98338 0.91936 1.68815 1.10246 1.02310 1.37179 1.22572 0.95531 0.97379 0.93307 1.20864 0.93008 0.98374 0.96062 0.93646 1.21439 0.99798 0.99341 0.96055 1.19011 0.94813 0.93785 0.92773 1.21613 0.93002 1.26549 1.15553 0.92306 1.25952 1.03921 0.94959 0.95024 1.70102 1.37161 1.30464 1.19904 0.85499 0.79483 0.78959 0.77447 1.19787 1.20752 1.18817 1.24034 0.97962 0.93486 0.97760 1.21998 0.94117 0.94059 0.97253 1.21479 1.02383 1.00425 0.93014 1.21709 0.97572 1.01239 0.98485 0.93216 0.91816 0.91525 0.90157 0.93979 0.91805 0.94062 0.95637 0.91992 0.94696 0.94431 0.91775 0.99336 0.99880 0.92907 0.90358 0.92361 0.91930 0.90914 0.92627 0.93409 0.90923 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.13 71.98 0.66 -1.57 16 2 C -0.07 -1.56 2.44 -10.79 -0.03 -1.59 16 3 C -0.15 -3.47 8.35 71.98 0.60 -2.87 16 4 C 0.04 0.92 1.87 42.18 0.08 1.00 16 5 H 0.06 1.62 7.88 -2.39 -0.02 1.60 16 6 N -0.46 -13.81 5.17 -901.95 -4.66 -18.47 16 7 C 0.04 1.50 4.11 86.30 0.35 1.85 16 8 C -0.06 -2.80 2.54 -10.79 -0.03 -2.83 16 9 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 10 C -0.11 -4.42 8.89 71.98 0.64 -3.78 16 11 C 0.03 1.85 4.45 29.85 0.13 1.98 16 12 C -0.53 -30.92 8.41 25.60 0.22 -30.70 16 13 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 14 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 15 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 16 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.00 -0.09 6.86 83.57 0.57 0.48 16 21 C -0.07 -1.49 1.21 -51.84 -0.06 -1.55 16 22 C -0.12 -2.03 7.83 71.98 0.56 -1.47 16 23 C -0.13 -2.16 9.25 71.98 0.67 -1.50 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.91 6.75 -2.39 -0.02 0.89 16 27 H 0.08 1.70 6.11 -2.39 -0.01 1.69 16 28 H 0.04 1.19 7.78 -2.39 -0.02 1.17 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.03 0.97 7.35 -2.39 -0.02 0.95 16 32 H 0.06 2.32 7.08 -2.39 -0.02 2.31 16 33 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 35 H 0.06 2.31 7.75 -2.39 -0.02 2.29 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 40 H 0.06 1.63 7.33 -2.39 -0.02 1.62 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.03 7.62 -2.39 -0.02 1.01 16 43 H 0.05 1.15 6.97 -2.38 -0.02 1.14 16 44 H 0.05 0.85 8.03 -2.39 -0.02 0.83 16 45 H 0.07 0.99 7.41 -2.39 -0.02 0.97 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -64.31 350.03 3.36 -60.95 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.89 Total: 10.31 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 4.83 Total: -42.17 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -4.38 Total: -76.53 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -64.31 3.36 -60.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602670521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.978 kcal (2) G-P(sol) polarization free energy of solvation -64.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds