Wall clock time and date at job start Sun Mar 29 2020 23:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47301 * 2 1 4 4 C 1.53004 * 109.46754 * 240.00570 * 2 1 3 5 5 C 1.50700 * 109.47449 * 64.99758 * 4 2 1 6 6 H 1.08004 * 119.99758 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00083 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99894 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46996 * 60.00393 * 9 7 5 11 11 H 1.48501 * 109.46879 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47358 * 300.00347 * 9 7 5 13 13 C 1.52991 * 109.47412 * 120.00538 * 2 1 3 14 14 N 1.46900 * 109.47303 * 294.99998 * 13 2 1 15 15 C 1.46893 * 111.00455 * 179.97438 * 14 13 2 16 16 C 1.53005 * 109.47356 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47322 * 300.00223 * 16 15 14 18 18 C 1.53003 * 109.46705 * 60.00141 * 16 15 14 19 19 C 1.52995 * 109.47101 * 180.02562 * 16 15 14 20 20 C 1.53780 * 113.61544 * 162.48058 * 19 16 15 21 21 C 1.53780 * 87.08335 * 220.01737 * 20 19 16 22 22 C 1.53778 * 113.61640 * 64.97812 * 19 16 15 23 23 H 1.09006 * 109.47622 * 59.99252 * 1 2 3 24 24 H 1.09003 * 109.46823 * 300.00041 * 1 2 3 25 25 H 1.09003 * 109.47612 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46868 * 185.00288 * 4 2 1 27 27 H 1.09005 * 109.47111 * 304.99872 * 4 2 1 28 28 H 0.97002 * 120.00022 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47098 * 54.99598 * 13 2 1 30 30 H 1.08998 * 109.47438 * 174.99809 * 13 2 1 31 31 H 1.00906 * 110.99675 * 303.95341 * 14 13 2 32 32 H 1.08997 * 109.47294 * 299.99666 * 15 14 13 33 33 H 1.09004 * 109.47005 * 59.99698 * 15 14 13 34 34 H 1.09007 * 109.46976 * 54.34996 * 17 16 15 35 35 H 1.08994 * 109.47568 * 174.34701 * 17 16 15 36 36 H 1.09002 * 109.47486 * 294.35208 * 17 16 15 37 37 H 1.09001 * 109.47163 * 64.28569 * 18 16 15 38 38 H 1.08996 * 109.47074 * 184.28225 * 18 16 15 39 39 H 1.08994 * 109.47012 * 304.28518 * 18 16 15 40 40 H 1.09001 * 112.84996 * 293.77930 * 19 16 15 41 41 H 1.09010 * 113.61151 * 334.56150 * 20 19 16 42 42 H 1.09000 * 113.61899 * 105.46700 * 20 19 16 43 43 H 1.08997 * 113.61385 * 270.88491 * 21 20 19 44 44 H 1.09004 * 113.61905 * 139.97814 * 21 20 19 45 45 H 1.09001 * 113.61696 * 254.52694 * 22 19 16 46 46 H 1.08997 * 113.61278 * 25.34982 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4767 6 1 1.0805 0.9747 -2.3756 7 6 1.9930 -0.4015 -3.7284 8 7 2.6762 -1.5185 -3.8513 9 14 1.4994 0.5637 -5.2496 10 1 2.0916 1.9241 -5.1865 11 1 1.9942 -0.1363 -6.4622 12 1 0.0194 0.6705 -5.3095 13 6 2.0400 -0.7213 1.2491 14 7 1.6515 0.0372 2.4456 15 6 2.1248 -0.6274 3.6671 16 6 1.7025 0.1906 4.8892 17 6 2.3127 1.5909 4.8013 18 6 0.1769 0.3005 4.9269 19 6 2.1962 -0.5013 6.1613 20 6 2.2108 0.4161 7.3955 21 6 3.5451 -0.2474 7.7753 22 6 3.7285 -0.5534 6.2793 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1262 -0.7994 -1.2057 27 1 1.6052 -1.7197 -1.2953 28 1 2.9234 -1.8415 -4.7319 29 1 1.6054 -1.7199 1.2949 30 1 3.1263 -0.7996 1.2054 31 1 1.9883 0.9871 2.3967 32 1 1.6904 -1.6251 3.7295 33 1 3.2117 -0.7053 3.6403 34 1 2.0426 2.0457 3.8482 35 1 1.9323 2.2049 5.6175 36 1 3.3979 1.5198 4.8754 37 1 -0.2554 -0.6904 5.0660 38 1 -0.1205 0.9459 5.7533 39 1 -0.1801 0.7241 3.9882 40 1 1.7119 -1.4621 6.3357 41 1 2.3033 1.4745 7.1516 42 1 1.4053 0.2120 8.1009 43 1 3.4296 -1.1385 8.3922 44 1 4.2826 0.4505 8.1718 45 1 4.1483 -1.5401 6.0838 46 1 4.2359 0.2391 5.7292 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602674835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:05 Heat of formation + Delta-G solvation = -13.673916 kcal Electronic energy + Delta-G solvation = -19278.341628 eV Core-core repulsion = 16588.248811 eV Total energy + Delta-G solvation = -2690.092817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.07645 -36.97376 -35.01681 -32.80747 -31.33656 -27.37585 -27.10253 -26.50054 -25.57232 -25.32783 -23.74415 -22.06793 -20.21347 -19.09352 -18.16040 -16.39207 -15.90139 -15.46598 -15.41014 -14.59116 -14.47164 -13.87022 -13.74323 -13.49795 -12.83898 -12.79744 -12.59221 -12.17541 -12.02721 -11.84043 -11.72502 -11.53776 -11.38024 -11.26090 -11.00803 -10.86721 -10.81960 -10.70858 -10.40359 -10.29615 -10.24380 -10.07141 -9.93876 -9.65151 -9.09245 -8.91274 -8.29948 -7.99279 -5.94886 -3.95957 3.36136 3.40329 3.42955 4.30218 4.48252 4.49702 4.53324 4.66242 4.78507 4.97591 5.07256 5.13624 5.40341 5.41037 5.52488 5.56881 5.61278 5.69980 5.72377 5.74916 5.76268 5.81657 5.88023 5.95613 6.00605 6.03404 6.13359 6.21076 6.22064 6.27284 6.44551 6.47523 6.55015 6.61028 6.74068 7.06826 7.22861 7.24989 7.46149 7.71442 7.76237 7.89692 8.05677 8.49843 9.10352 9.67185 11.16678 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.047347 B = 0.003422 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.233152 B = 8179.676143 C = 8398.656770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.686 5.686 15 C 0.070 3.930 16 C -0.051 4.051 17 C -0.149 4.149 18 C -0.131 4.131 19 C -0.098 4.098 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.141 4.141 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.012 0.988 27 H 0.016 0.984 28 H 0.260 0.740 29 H 0.064 0.936 30 H 0.022 0.978 31 H 0.335 0.665 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 3.321 21.994 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.317 5.317 15 C -0.059 4.059 16 C -0.051 4.051 17 C -0.206 4.206 18 C -0.188 4.188 19 C -0.117 4.117 20 C -0.177 4.177 21 C -0.181 4.181 22 C -0.178 4.178 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.154 0.846 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.882 2.914 21.884 22.094 hybrid contribution 0.815 0.508 -0.984 1.375 sum -0.067 3.422 20.900 21.178 Atomic orbital electron populations 1.21576 0.95748 1.00507 1.00051 1.21189 0.95972 0.98829 0.94116 0.92976 1.19115 0.95855 0.95562 0.90467 1.21213 1.34583 1.08263 0.91029 0.92635 1.25023 0.95358 0.95108 0.99078 1.69960 1.39103 1.21249 1.23440 0.86691 0.78904 0.80096 0.82502 1.20324 1.21389 1.20268 1.22126 0.96999 0.97715 0.89610 1.60575 1.64004 1.05707 1.01457 1.21898 0.96851 0.97745 0.89453 1.20440 0.96320 0.94933 0.93445 1.22054 1.00397 0.96248 1.01919 1.21712 0.93924 1.01160 1.02003 1.22567 0.95846 0.98966 0.94334 1.23048 0.97334 0.99842 0.97428 1.22801 0.97957 1.00611 0.96754 1.23025 0.96633 1.01896 0.96279 0.92895 0.93943 0.94231 0.97005 0.96602 0.93068 0.91722 0.96009 0.84588 0.91511 0.95715 0.92089 0.92434 0.92743 0.93326 0.93781 0.90996 0.89532 0.89555 0.91985 0.90570 0.91842 0.91854 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.55 8.41 -34.44 -0.29 -14.83 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.13 5.07 -3.83 -0.02 1.11 16 14 N -0.69 -9.94 5.09 -113.79 -0.58 -10.52 16 15 C 0.07 0.87 4.50 -3.83 -0.02 0.86 16 16 C -0.05 -0.52 0.50 -154.51 -0.08 -0.60 16 17 C -0.15 -1.44 7.36 37.16 0.27 -1.17 16 18 C -0.13 -1.40 8.32 37.16 0.31 -1.09 16 19 C -0.10 -0.90 3.03 -89.81 -0.27 -1.17 16 20 C -0.14 -1.13 7.31 -25.92 -0.19 -1.32 16 21 C -0.14 -1.12 8.08 -25.91 -0.21 -1.33 16 22 C -0.14 -1.25 6.72 -25.92 -0.17 -1.42 16 23 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 24 H 0.04 0.75 7.75 -51.93 -0.40 0.34 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.34 4.68 6.66 -39.29 -0.26 4.42 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.02 0.32 7.60 -51.93 -0.39 -0.08 16 34 H 0.06 0.63 6.30 -51.92 -0.33 0.31 16 35 H 0.06 0.50 6.39 -51.93 -0.33 0.17 16 36 H 0.05 0.51 6.02 -51.93 -0.31 0.20 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.88 7.47 -51.93 -0.39 0.49 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.69 5.71 -51.92 -0.30 0.40 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.77 6.02 -51.93 -0.31 0.45 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -29.11 346.04 -9.24 -38.36 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.81 Total: -0.49 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -0.78 Total: -22.88 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.16 Total: -37.10 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.11 -9.24 -38.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602674835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.682 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds