Wall clock time and date at job start Sun Mar 29 2020 23:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47007 * 2 1 4 4 C 1.53004 * 109.47066 * 119.99776 * 2 1 3 5 5 C 1.50702 * 109.47100 * 294.99820 * 4 2 1 6 6 H 1.08003 * 119.99701 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99841 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99678 * 179.72565 * 7 5 4 9 9 Si 1.86801 * 119.99965 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46859 * 269.72489 * 9 7 5 11 11 H 1.48496 * 109.47058 * 29.72190 * 9 7 5 12 12 H 1.48499 * 109.46792 * 149.72796 * 9 7 5 13 13 C 1.52999 * 109.47173 * 239.99984 * 2 1 3 14 14 N 1.46901 * 109.47311 * 64.99590 * 13 2 1 15 15 C 1.46899 * 110.99881 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.46790 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.47131 * 299.99955 * 16 15 14 18 18 C 1.53001 * 109.47224 * 60.00141 * 16 15 14 19 19 C 1.52998 * 109.46899 * 180.02562 * 16 15 14 20 20 C 1.53785 * 113.61763 * 162.48989 * 19 16 15 21 21 C 1.53775 * 87.08421 * 220.01721 * 20 19 16 22 22 C 1.53783 * 113.61907 * 64.99099 * 19 16 15 23 23 H 1.09003 * 109.47458 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47276 * 300.00065 * 1 2 3 25 25 H 1.09002 * 109.47555 * 59.99942 * 1 2 3 26 26 H 1.08997 * 109.46726 * 175.00067 * 4 2 1 27 27 H 1.08996 * 109.46818 * 55.00163 * 4 2 1 28 28 H 0.97009 * 119.99634 * 180.27407 * 8 7 5 29 29 H 1.08998 * 109.47171 * 185.00476 * 13 2 1 30 30 H 1.09009 * 109.46683 * 304.99759 * 13 2 1 31 31 H 1.00903 * 110.99358 * 56.04843 * 14 13 2 32 32 H 1.09001 * 109.47304 * 300.00407 * 15 14 13 33 33 H 1.08990 * 109.47096 * 60.00522 * 15 14 13 34 34 H 1.08994 * 109.47371 * 53.16431 * 17 16 15 35 35 H 1.09006 * 109.47479 * 173.16619 * 17 16 15 36 36 H 1.08996 * 109.47420 * 293.16365 * 17 16 15 37 37 H 1.09005 * 109.47286 * 63.12535 * 18 16 15 38 38 H 1.08999 * 109.47127 * 183.12216 * 18 16 15 39 39 H 1.08992 * 109.46916 * 303.12233 * 18 16 15 40 40 H 1.09004 * 112.85365 * 293.79472 * 19 16 15 41 41 H 1.09002 * 113.60729 * 334.57040 * 20 19 16 42 42 H 1.08994 * 113.61633 * 105.46291 * 20 19 16 43 43 H 1.08998 * 113.61595 * 270.88635 * 21 20 19 44 44 H 1.08998 * 113.61823 * 139.97716 * 21 20 19 45 45 H 1.08996 * 113.61223 * 254.53410 * 22 19 16 46 46 H 1.09003 * 113.61002 * 25.43118 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9743 2.3756 7 6 1.9932 -0.4015 3.7283 8 7 1.6500 0.2806 4.7990 9 14 2.9648 -1.9875 3.9028 10 1 2.0264 -3.1317 4.0263 11 1 3.8218 -2.1772 2.7050 12 1 3.8183 -1.9141 5.1157 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0373 -2.4457 15 6 2.1247 -0.6273 -3.6672 16 6 1.7023 0.1908 -4.8892 17 6 0.1768 0.3007 -4.9269 18 6 2.3125 1.5911 -4.8013 19 6 2.1948 -0.5018 -6.1615 20 6 1.4842 -0.0224 -7.4383 21 6 1.4868 -1.4903 -7.8966 22 6 1.5435 -1.8729 -6.4082 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.1263 -0.7994 1.2056 27 1 1.6053 -1.7197 1.2952 28 1 1.9011 -0.0401 5.6795 29 1 3.1263 -0.7995 -1.2055 30 1 1.6053 -1.7199 -1.2950 31 1 1.9881 0.9872 -2.3967 32 1 3.2116 -0.7053 -3.6405 33 1 1.6903 -1.6249 -3.7296 34 1 -0.1838 0.6818 -3.9715 35 1 -0.1189 0.9819 -5.7248 36 1 -0.2540 -0.6834 -5.1113 37 1 3.3996 1.5162 -4.8304 38 1 1.9670 2.1914 -5.6429 39 1 2.0057 2.0631 -3.8680 40 1 3.2817 -0.5136 -6.2434 41 1 0.4862 0.3773 -7.2586 42 1 2.0969 0.6302 -8.0602 43 1 2.3800 -1.7721 -8.4541 44 1 0.5644 -1.7951 -8.3909 45 1 2.2041 -2.7141 -6.1984 46 1 0.5616 -1.9791 -5.9469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602674836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:08 Heat of formation + Delta-G solvation = -10.352416 kcal Electronic energy + Delta-G solvation = -19331.649661 eV Core-core repulsion = 16641.700875 eV Total energy + Delta-G solvation = -2689.948786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09506 -37.08681 -35.12046 -32.78821 -31.47799 -27.60482 -27.39071 -26.63239 -25.63078 -25.38073 -23.69144 -21.83111 -20.22961 -19.13237 -18.18192 -16.77480 -15.97861 -15.60723 -15.37622 -14.66176 -14.45711 -13.89060 -13.75536 -13.36364 -13.15282 -12.80802 -12.70893 -12.44533 -12.13106 -11.93383 -11.67220 -11.60982 -11.46696 -11.40012 -11.10677 -10.93344 -10.91045 -10.69599 -10.43081 -10.39050 -10.13504 -10.04614 -9.75092 -9.70380 -9.32576 -9.01729 -8.49179 -8.08437 -5.99577 -3.96180 3.33205 3.40431 3.44304 4.25332 4.44762 4.49122 4.50044 4.64862 4.71815 4.95106 5.07302 5.09200 5.34102 5.39143 5.48727 5.53034 5.55017 5.62290 5.67875 5.71089 5.72586 5.74929 5.81212 5.87521 5.96411 6.01038 6.06644 6.08148 6.17298 6.27297 6.33716 6.40728 6.47622 6.54479 6.64021 6.88742 7.08180 7.19069 7.32097 7.37221 7.50922 7.68310 7.86019 8.60474 9.06459 9.63591 11.13942 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.042332 B = 0.003645 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.284733 B = 7680.107458 C = 7934.487074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 H 0.058 0.942 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.062 3.938 14 N -0.685 5.685 15 C 0.070 3.930 16 C -0.051 4.051 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.100 4.100 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.140 4.140 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.012 0.988 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.337 0.663 32 H 0.022 0.978 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 -1.708 -24.545 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.316 5.316 15 C -0.059 4.059 16 C -0.051 4.051 17 C -0.195 4.195 18 C -0.201 4.201 19 C -0.118 4.118 20 C -0.176 4.176 21 C -0.181 4.181 22 C -0.177 4.177 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.156 0.844 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.106 -1.992 -24.376 24.458 hybrid contribution 1.609 -0.732 0.331 1.798 sum 1.503 -2.724 -24.045 24.245 Atomic orbital electron populations 1.21588 0.95296 1.00570 1.00620 1.21001 0.96323 0.98957 0.92957 0.92324 1.19614 0.95665 0.95886 0.93553 1.21145 1.35162 1.09541 0.89104 0.90832 1.25032 0.95693 0.96943 0.95966 1.69920 1.47326 1.39279 0.98016 0.86802 0.80648 0.84394 0.77558 1.20373 1.19154 1.21515 1.22156 0.96926 0.97769 0.89861 1.60548 1.63968 1.05776 1.01330 1.21907 0.96660 0.97911 0.89467 1.20441 0.96411 0.94914 0.93374 1.21908 0.94058 1.01215 1.02271 1.21862 1.00065 0.96153 1.01985 1.22567 0.99273 0.95939 0.94055 1.23045 1.01459 0.96260 0.96863 1.22798 1.01647 0.97024 0.96679 1.23027 1.01591 0.96998 0.96105 0.94293 0.92344 0.93688 0.97017 0.97092 0.92863 0.96052 0.91710 0.84402 0.95984 0.91288 0.90871 0.93404 0.92894 0.93211 0.92723 0.92015 0.89797 0.89401 0.92077 0.90650 0.91778 0.91930 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.07 -1.46 2.48 -90.62 -0.22 -1.68 16 3 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.61 8.96 -34.44 -0.31 -14.92 16 6 H 0.07 2.25 7.30 -52.48 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 9 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 C 0.06 1.02 5.07 -3.82 -0.02 1.00 16 14 N -0.68 -9.43 5.05 -113.78 -0.57 -10.01 16 15 C 0.07 0.83 4.50 -3.82 -0.02 0.81 16 16 C -0.05 -0.50 0.50 -154.51 -0.08 -0.58 16 17 C -0.14 -1.38 7.46 37.15 0.28 -1.11 16 18 C -0.14 -1.37 8.16 37.16 0.30 -1.06 16 19 C -0.10 -0.87 3.03 -89.81 -0.27 -1.14 16 20 C -0.14 -1.10 7.30 -25.92 -0.19 -1.29 16 21 C -0.14 -1.09 8.08 -25.92 -0.21 -1.30 16 22 C -0.14 -1.19 6.72 -25.92 -0.17 -1.37 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 25 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 26 H 0.01 0.28 7.19 -51.93 -0.37 -0.09 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 31 H 0.34 4.51 6.71 -39.29 -0.26 4.25 16 32 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.85 7.61 -51.93 -0.39 0.45 16 34 H 0.07 0.86 7.40 -51.93 -0.38 0.48 16 35 H 0.05 0.43 6.46 -51.93 -0.34 0.10 16 36 H 0.05 0.53 5.98 -51.93 -0.31 0.22 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.06 0.63 6.42 -51.93 -0.33 0.29 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.70 5.73 -51.93 -0.30 0.40 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.78 6.01 -51.93 -0.31 0.47 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -29.50 342.43 -8.87 -38.37 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.78 Total: -0.24 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -0.78 Total: -23.22 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.20 Total: -37.47 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.50 -8.87 -38.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602674836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.021 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds