Wall clock time and date at job start Sun Mar 29 2020 23:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46905 * 2 1 4 4 C 1.53002 * 109.47122 * 119.99768 * 2 1 3 5 5 H 1.09002 * 109.47181 * 300.00445 * 4 2 1 6 6 C 1.52997 * 109.47333 * 180.02562 * 4 2 1 7 7 N 1.46900 * 109.46859 * 60.00173 * 4 2 1 8 8 C 1.46895 * 111.00100 * 190.09901 * 7 4 2 9 9 C 1.53002 * 109.47217 * 76.09449 * 8 7 4 10 10 H 1.08997 * 109.47460 * 305.56901 * 9 8 7 11 11 C 1.53005 * 109.46586 * 65.56550 * 9 8 7 12 12 C 1.53001 * 109.47629 * 185.56313 * 9 8 7 13 13 C 1.50692 * 109.47171 * 174.99999 * 12 9 8 14 14 H 1.08001 * 120.00222 * 0.02562 * 13 12 9 15 15 C 1.37888 * 119.99812 * 180.02562 * 13 12 9 16 16 N 1.31514 * 119.99701 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99882 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47382 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47329 * 119.99966 * 17 15 13 20 20 H 1.48500 * 109.47306 * 240.00225 * 17 15 13 21 21 C 1.46899 * 110.99857 * 66.14574 * 7 4 2 22 22 C 1.53004 * 117.50114 * 258.23114 * 21 7 4 23 23 C 1.52999 * 59.99949 * 252.51030 * 22 21 7 24 24 H 1.08995 * 109.46720 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47449 * 300.00019 * 1 2 3 26 26 H 1.09004 * 109.46707 * 59.99941 * 1 2 3 27 27 H 1.09002 * 109.47456 * 240.00045 * 2 1 3 28 28 H 1.09004 * 109.47038 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47693 * 300.00037 * 3 2 1 30 30 H 1.09002 * 109.47299 * 60.00259 * 3 2 1 31 31 H 1.09003 * 109.47169 * 66.80107 * 6 4 2 32 32 H 1.08992 * 109.47172 * 186.80348 * 6 4 2 33 33 H 1.09007 * 109.46816 * 306.80847 * 6 4 2 34 34 H 1.09005 * 109.47350 * 316.10312 * 8 7 4 35 35 H 1.08998 * 109.47537 * 196.09884 * 8 7 4 36 36 H 1.09001 * 109.47256 * 65.04111 * 11 9 8 37 37 H 1.09001 * 109.46684 * 185.03464 * 11 9 8 38 38 H 1.08998 * 109.47153 * 305.03502 * 11 9 8 39 39 H 1.09001 * 109.47037 * 295.01121 * 12 9 8 40 40 H 1.08999 * 109.46580 * 55.00497 * 12 9 8 41 41 H 0.96996 * 119.99739 * 180.02562 * 16 15 13 42 42 H 1.09000 * 115.55099 * 43.94283 * 21 7 4 43 43 H 1.09000 * 117.49494 * 0.02562 * 22 21 7 44 44 H 1.08993 * 117.49720 * 145.02324 * 22 21 7 45 45 H 1.09002 * 117.49875 * 252.50795 * 23 22 21 46 46 H 1.09005 * 117.49935 * 107.48638 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5700 -0.7207 1.2497 7 7 1.5503 -2.1062 1.2493 8 6 1.8149 -2.7581 2.5387 9 6 0.8132 -2.2546 3.5799 10 1 0.8466 -1.1659 3.6195 11 6 -0.5959 -2.7078 3.1926 12 6 1.1735 -2.8262 4.9526 13 6 0.2632 -2.2346 5.9977 14 1 -0.4966 -1.5225 5.7115 15 6 0.4004 -2.6025 7.3195 16 7 1.3261 -3.4693 7.6681 17 14 -0.7283 -1.8697 8.6149 18 1 -1.6764 -0.9267 7.9691 19 1 -1.4884 -2.9574 9.2817 20 1 0.0827 -1.1421 9.6238 21 6 2.1376 -2.8721 0.1418 22 6 1.2672 -3.1070 -1.0944 23 6 1.5644 -4.2630 -0.1372 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.9329 0.2999 1.3716 32 1 3.9333 -1.3362 2.0725 33 1 3.9337 -1.1252 0.3050 34 1 2.8277 -2.5211 2.8648 35 1 1.7122 -3.8376 2.4280 36 1 -0.6537 -3.7953 3.2400 37 1 -1.3194 -2.2751 3.8836 38 1 -0.8185 -2.3759 2.1785 39 1 1.0542 -3.9096 4.9378 40 1 2.2081 -2.5779 5.1893 41 1 1.4223 -3.7284 8.5978 42 1 3.2065 -2.7276 -0.0150 43 1 0.2590 -2.6928 -1.0861 44 1 1.7635 -3.1169 -2.0648 45 1 2.2562 -5.0334 -0.4780 46 1 0.7516 -4.6097 0.5010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:30 Heat of formation + Delta-G solvation = 0.585518 kcal Electronic energy + Delta-G solvation = -20197.929718 eV Core-core repulsion = 17508.455237 eV Total energy + Delta-G solvation = -2689.474482 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.39166 -35.82353 -35.39956 -32.90600 -31.62478 -29.03021 -27.01348 -26.64187 -25.30058 -23.48512 -22.66538 -22.06998 -20.75415 -19.23111 -18.20842 -16.46281 -16.26674 -15.29659 -14.64187 -14.46796 -14.21979 -14.08971 -13.62568 -13.01261 -12.98656 -12.57690 -12.31428 -12.11042 -12.04614 -11.96065 -11.49427 -11.34502 -11.29506 -10.99933 -10.91079 -10.78242 -10.68750 -10.56473 -10.35578 -10.23246 -10.22724 -10.08520 -9.86436 -9.51077 -9.04071 -8.87543 -8.29446 -7.86056 -5.94320 -3.94859 3.33973 3.41558 3.45819 3.94260 4.07027 4.51338 4.84067 5.05140 5.09442 5.13525 5.20895 5.39838 5.41768 5.44825 5.54149 5.61049 5.70402 5.74605 5.78516 5.84188 5.93439 5.98838 6.00850 6.04356 6.12853 6.16311 6.24173 6.27064 6.31496 6.39306 6.49366 6.54038 6.62824 6.68824 6.80399 7.10037 7.22571 7.27834 7.54420 7.56185 7.74771 7.91578 8.06863 8.51575 9.12028 9.68373 11.17325 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.023762 B = 0.005358 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.067805 B = 5224.852899 C = 5631.967416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 C -0.149 4.149 4 C 0.087 3.913 5 H 0.087 0.913 6 C -0.187 4.187 7 N -0.497 5.497 8 C 0.059 3.941 9 C -0.076 4.076 10 H 0.053 0.947 11 C -0.121 4.121 12 C 0.027 3.973 13 C -0.509 4.509 14 H 0.056 0.944 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.008 3.992 22 C -0.167 4.167 23 C -0.174 4.174 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.014 0.986 40 H 0.011 0.989 41 H 0.258 0.742 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 4.247 -17.576 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.101 4.101 3 C -0.207 4.207 4 C -0.021 4.021 5 H 0.105 0.895 6 C -0.245 4.245 7 N -0.220 5.220 8 C -0.068 4.068 9 C -0.095 4.095 10 H 0.072 0.928 11 C -0.178 4.178 12 C -0.011 4.011 13 C -0.547 4.547 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.101 4.101 22 C -0.205 4.205 23 C -0.212 4.212 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.563 4.163 -17.484 18.040 hybrid contribution 0.428 0.282 1.035 1.155 sum 1.991 4.445 -16.449 17.155 Atomic orbital electron populations 1.21725 0.94770 1.02575 1.00350 1.21061 0.96452 0.94926 0.97644 1.21899 1.00797 0.96443 1.01530 1.21738 0.92106 0.89506 0.98786 0.89507 1.22492 0.98223 1.02175 1.01639 1.62029 1.56655 1.00884 1.02431 1.22343 0.98125 0.98424 0.87886 1.21155 0.93866 0.99372 0.95072 0.92831 1.21570 0.97107 0.99817 0.99351 1.19133 0.96393 0.96102 0.89432 1.21279 1.16779 1.24714 0.91942 0.92589 1.25019 0.95564 0.95312 0.98690 1.69978 1.33408 1.33147 1.17233 0.86598 0.80882 0.79046 0.81857 1.19764 1.21113 1.21160 1.22399 0.95321 0.97395 0.95016 1.23027 1.01584 1.02546 0.93346 1.22995 1.03727 0.91080 1.03352 0.91304 0.93082 0.94140 0.91479 0.92830 0.93061 0.92666 0.92214 0.92201 0.92801 0.94875 0.91455 0.94398 0.93194 0.93787 0.96718 0.97073 0.93225 0.89825 0.88312 0.89641 0.89323 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.04 37.16 0.34 -1.30 16 2 C -0.08 -0.95 2.26 -90.62 -0.20 -1.15 16 3 C -0.15 -1.54 8.84 37.16 0.33 -1.21 16 4 C 0.09 1.17 1.81 -67.71 -0.12 1.05 16 5 H 0.09 1.35 6.58 -51.93 -0.34 1.01 16 6 C -0.19 -2.34 7.91 37.16 0.29 -2.05 16 7 N -0.50 -7.13 3.14 -218.72 -0.69 -7.82 16 8 C 0.06 1.02 4.23 -3.83 -0.02 1.01 16 9 C -0.08 -1.56 2.40 -90.62 -0.22 -1.77 16 10 H 0.05 1.13 6.67 -51.93 -0.35 0.79 16 11 C -0.12 -2.37 8.87 37.16 0.33 -2.04 16 12 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 13 C -0.51 -14.37 8.47 -34.44 -0.29 -14.66 16 14 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C 0.01 0.10 3.82 -67.71 -0.26 -0.16 16 22 C -0.17 -1.84 9.65 -26.73 -0.26 -2.10 16 23 C -0.17 -2.08 9.62 -26.73 -0.26 -2.33 16 24 H 0.07 0.89 6.41 -51.93 -0.33 0.56 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.77 6.81 -51.93 -0.35 0.41 16 28 H 0.05 0.52 6.59 -51.93 -0.34 0.18 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.69 6.81 -51.93 -0.35 0.33 16 32 H 0.06 0.84 6.26 -51.93 -0.33 0.51 16 33 H 0.05 0.62 6.45 -51.93 -0.34 0.29 16 34 H 0.03 0.60 6.10 -51.93 -0.32 0.28 16 35 H 0.07 1.19 7.09 -51.93 -0.37 0.83 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 1.04 7.10 -51.93 -0.37 0.67 16 38 H 0.04 0.77 7.64 -51.93 -0.40 0.38 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.08 1.04 6.06 -51.93 -0.31 0.73 16 43 H 0.10 1.14 6.95 -51.93 -0.36 0.78 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.10 1.32 7.96 -51.93 -0.41 0.91 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -28.89 344.21 -8.92 -37.81 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.58 Total: -0.90 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -0.56 Total: -24.67 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.05 Total: -34.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.89 -8.92 -37.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.395 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds