Wall clock time and date at job start Sun Mar 29 2020 23:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 N 1.46900 * 109.46997 * 119.99590 * 2 1 3 5 5 C 1.46904 * 110.99949 * 267.15896 * 4 2 1 6 6 H 1.08996 * 109.47015 * 340.47454 * 5 4 2 7 7 C 1.53004 * 109.47048 * 100.47831 * 5 4 2 8 8 C 1.53004 * 109.46716 * 220.47457 * 5 4 2 9 9 C 1.50694 * 109.47129 * 65.00290 * 8 5 4 10 10 H 1.08003 * 120.00036 * 359.97438 * 9 8 5 11 11 C 1.37875 * 120.00089 * 179.97438 * 9 8 5 12 12 N 1.31513 * 120.00263 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00045 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47273 * 89.99934 * 13 11 9 15 15 H 1.48507 * 109.47263 * 209.99507 * 13 11 9 16 16 H 1.48503 * 109.47311 * 329.99754 * 13 11 9 17 17 C 1.52994 * 109.47040 * 239.99565 * 2 1 3 18 18 C 1.54249 * 108.89622 * 176.23444 * 17 2 1 19 19 C 1.50547 * 108.48455 * 159.17772 * 18 17 2 20 20 C 1.54063 * 112.41417 * 94.27073 * 19 18 17 21 21 C 1.54065 * 112.81382 * 318.27517 * 20 19 18 22 22 C 1.50469 * 112.49912 * 318.28460 * 21 20 19 23 23 C 1.45544 * 108.89767 * 53.44470 * 17 2 1 24 24 H 1.09003 * 109.46986 * 293.58540 * 1 2 3 25 25 H 1.08998 * 109.47137 * 53.58531 * 1 2 3 26 26 H 1.09000 * 109.47306 * 173.58637 * 1 2 3 27 27 H 1.00901 * 111.00348 * 143.20021 * 4 2 1 28 28 H 1.08993 * 109.47082 * 53.74552 * 7 5 4 29 29 H 1.09004 * 109.46450 * 173.74258 * 7 5 4 30 30 H 1.08996 * 109.46940 * 293.73710 * 7 5 4 31 31 H 1.09005 * 109.46845 * 184.99705 * 8 5 4 32 32 H 1.08999 * 109.47183 * 304.99787 * 8 5 4 33 33 H 0.97002 * 120.00271 * 179.97438 * 12 11 9 34 34 H 1.09003 * 108.87232 * 294.83623 * 17 2 1 35 35 H 1.08994 * 109.62474 * 278.97873 * 18 17 2 36 36 H 1.09002 * 109.62249 * 39.55011 * 18 17 2 37 37 H 1.08998 * 108.92421 * 333.51246 * 19 18 17 38 38 H 1.08999 * 108.91758 * 215.01651 * 19 18 17 39 39 H 1.09002 * 108.81244 * 197.41913 * 20 19 18 40 40 H 1.08990 * 108.73128 * 79.07799 * 20 19 18 41 41 H 1.09008 * 108.87749 * 197.50913 * 21 20 19 42 42 H 1.09000 * 108.80064 * 79.01489 * 21 20 19 43 43 H 1.09004 * 109.63181 * 334.44989 * 22 21 20 44 44 H 1.08999 * 109.63382 * 213.86339 * 22 21 20 45 45 H 1.09002 * 108.89121 * 303.43996 * 23 17 2 46 46 H 1.08994 * 108.89090 * 61.93342 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.2592 0.2571 2.2945 6 1 2.3567 1.2636 1.8878 7 6 1.0839 0.2140 3.2732 8 6 3.5472 -0.1240 3.0272 9 6 4.7212 0.0368 2.0962 10 1 4.5643 0.3765 1.0830 11 6 5.9955 -0.2495 2.5377 12 7 6.1867 -0.6626 3.7716 13 14 7.4506 -0.0509 1.3833 14 1 7.9887 1.3284 1.4979 15 1 8.5089 -1.0268 1.7482 16 1 7.0113 -0.2964 -0.0138 17 6 2.0400 -0.7213 -1.2491 18 6 3.5794 -0.6311 -1.2846 19 6 4.1015 -1.7280 -2.1739 20 6 4.3277 -1.2527 -3.6218 21 6 3.1956 -0.3427 -4.1356 22 6 1.8326 -0.8343 -3.7297 23 6 1.4239 -0.1224 -2.4239 24 1 -0.3633 0.4112 0.9418 25 1 -0.3633 0.6100 -0.8270 26 1 -0.3634 -1.0212 -0.1148 27 1 2.8513 -1.2259 0.9950 28 1 0.9165 -0.8138 3.5949 29 1 1.3107 0.8339 4.1407 30 1 0.1875 0.5914 2.7813 31 1 3.6785 0.5254 3.8929 32 1 3.4844 -1.1609 3.3571 33 1 7.0832 -0.8644 4.0821 34 1 1.7490 -1.7704 -1.1940 35 1 3.8803 0.3385 -1.6812 36 1 3.9768 -0.7571 -0.2774 37 1 3.3848 -2.5492 -2.1801 38 1 5.0468 -2.0905 -1.7700 39 1 4.3993 -2.1253 -4.2710 40 1 5.2680 -0.7035 -3.6670 41 1 3.2449 -0.2986 -5.2236 42 1 3.3423 0.6605 -3.7354 43 1 1.8659 -1.9112 -3.5645 44 1 1.1115 -0.6034 -4.5137 45 1 0.3401 -0.1730 -2.3185 46 1 1.7224 0.9241 -2.4841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813137.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:00 Heat of formation + Delta-G solvation = -40.613949 kcal Electronic energy + Delta-G solvation = -20500.407655 eV Core-core repulsion = 17809.146631 eV Total energy + Delta-G solvation = -2691.261025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.48144 -36.59423 -33.93949 -32.32607 -31.90568 -29.93597 -28.08945 -27.20232 -24.53899 -24.33366 -22.94262 -21.14262 -19.82485 -19.14569 -19.04731 -16.36066 -15.98031 -15.14275 -14.65672 -14.45628 -14.33060 -14.01092 -13.58538 -13.17872 -12.84957 -12.54579 -12.08422 -12.03178 -11.94606 -11.87911 -11.78708 -11.45181 -11.28183 -11.06957 -10.88034 -10.64868 -10.55079 -10.43962 -10.34931 -10.23634 -10.12223 -10.00203 -9.97388 -9.60899 -9.07327 -8.96015 -8.39864 -7.53236 -6.02895 -4.05754 3.28410 3.35851 3.37732 4.42413 4.68563 4.85902 4.98054 5.02890 5.28439 5.30585 5.35242 5.41505 5.53669 5.56364 5.62971 5.83581 5.85721 5.93996 5.95258 6.05911 6.07819 6.13614 6.22357 6.27029 6.29986 6.33933 6.35016 6.38468 6.44923 6.46955 6.51745 6.57213 6.66828 6.75511 6.82217 6.90223 6.99110 7.05165 7.59569 7.67154 7.97645 8.17248 8.37052 8.43151 9.01385 9.58527 11.08039 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.008689 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.911375 B = 3221.759133 C = 4795.968924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.041 0.959 4 N -0.681 5.681 5 C 0.086 3.914 6 H 0.035 0.965 7 C -0.134 4.134 8 C 0.013 3.987 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.882 3.118 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.270 1.270 17 C -0.087 4.087 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.112 4.112 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.355 0.645 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.377 -0.044 -12.850 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 H 0.059 0.941 4 N -0.316 5.316 5 C -0.023 4.023 6 H 0.053 0.947 7 C -0.192 4.192 8 C -0.024 4.024 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.710 3.290 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.195 1.195 17 C -0.106 4.106 18 C -0.166 4.166 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.150 4.150 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.178 0.822 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.848 -0.283 -12.497 15.315 hybrid contribution 1.809 0.598 -0.839 2.081 sum -7.039 0.315 -13.336 15.083 Atomic orbital electron populations 1.21932 0.95985 1.01184 1.00593 1.21655 0.94727 0.96110 0.89894 0.94135 1.60675 1.39094 1.26000 1.05843 1.21710 0.95691 0.93274 0.91650 0.94666 1.21859 0.97783 1.01112 0.98468 1.19422 0.89910 0.97407 0.95674 1.21269 0.91705 1.44914 0.98300 0.92382 1.24974 0.98856 0.95189 0.94939 1.69961 1.21805 1.45341 1.15843 0.86739 0.82806 0.77871 0.81554 1.20819 1.21267 1.19507 1.20296 0.95435 1.00507 0.94367 1.21679 0.94503 0.98654 1.01785 1.21307 1.01187 0.98633 0.94176 1.21917 0.98042 0.98903 0.96525 1.21330 0.94821 0.99802 0.99513 1.21309 0.96234 1.00690 0.97017 1.20607 1.00489 0.99669 0.94222 0.92771 0.93479 0.92812 0.82224 0.92881 0.93663 0.94394 0.96217 0.95859 0.93000 0.91134 0.92299 0.88968 0.92306 0.92357 0.92870 0.92703 0.93042 0.92165 0.91728 0.92553 0.91923 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.67 37.16 0.32 -1.65 16 2 C 0.09 1.40 2.21 -67.72 -0.15 1.25 16 3 H 0.04 0.72 7.16 -51.93 -0.37 0.35 16 4 N -0.68 -12.97 6.15 -99.74 -0.61 -13.58 16 5 C 0.09 1.80 2.68 -67.71 -0.18 1.62 16 6 H 0.04 0.76 7.10 -51.93 -0.37 0.39 16 7 C -0.13 -2.47 9.47 37.16 0.35 -2.11 16 8 C 0.01 0.34 4.44 -27.88 -0.12 0.21 16 9 C -0.52 -14.01 7.82 -34.44 -0.27 -14.28 16 10 H 0.06 1.50 5.96 -52.48 -0.31 1.18 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 13 Si 0.88 21.18 29.54 -169.99 -5.02 16.15 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 17 C -0.09 -1.26 1.41 -93.49 -0.13 -1.39 16 18 C -0.13 -2.09 4.82 -27.30 -0.13 -2.22 16 19 C -0.12 -1.67 5.32 -27.40 -0.15 -1.82 16 20 C -0.12 -1.45 5.85 -25.62 -0.15 -1.60 16 21 C -0.12 -1.34 5.31 -27.44 -0.15 -1.49 16 22 C -0.11 -1.28 5.61 -27.35 -0.15 -1.43 16 23 C -0.11 -1.38 4.12 -29.60 -0.12 -1.50 16 24 H 0.05 0.80 6.33 -51.93 -0.33 0.47 16 25 H 0.05 0.58 6.64 -51.93 -0.34 0.23 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.35 7.35 5.02 -39.29 -0.20 7.16 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.62 6.39 -51.93 -0.33 0.29 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.07 1.05 7.47 -51.93 -0.39 0.66 16 35 H 0.06 0.97 6.96 -51.93 -0.36 0.61 16 36 H 0.09 1.80 3.96 -51.93 -0.21 1.59 16 37 H 0.06 0.80 6.63 -51.93 -0.34 0.46 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.06 0.73 6.62 -51.93 -0.34 0.39 16 43 H 0.06 0.73 6.98 -51.93 -0.36 0.37 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.72 6.01 -51.93 -0.31 0.41 16 46 H 0.06 0.72 7.47 -51.93 -0.39 0.33 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -27.51 329.92 -9.38 -36.89 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.32 Total: 5.89 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -1.13 Total: -24.78 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.12 Total: -39.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.51 -9.38 -36.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813137.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.728 kcal (2) G-P(sol) polarization free energy of solvation -27.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds