Wall clock time and date at job start Sun Mar 29 2020 23:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 N 1.46900 * 109.46997 * 119.99590 * 2 1 3 5 5 C 1.46904 * 110.99949 * 267.15896 * 4 2 1 6 6 H 1.08996 * 109.47015 * 340.47454 * 5 4 2 7 7 C 1.53004 * 109.47048 * 100.47831 * 5 4 2 8 8 C 1.53004 * 109.46716 * 220.47457 * 5 4 2 9 9 C 1.50694 * 109.47129 * 65.00290 * 8 5 4 10 10 H 1.08003 * 120.00036 * 359.97438 * 9 8 5 11 11 C 1.37875 * 120.00089 * 179.97438 * 9 8 5 12 12 N 1.31513 * 120.00263 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00045 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47273 * 89.99934 * 13 11 9 15 15 H 1.48507 * 109.47263 * 209.99507 * 13 11 9 16 16 H 1.48503 * 109.47311 * 329.99754 * 13 11 9 17 17 C 1.52994 * 109.47040 * 239.99565 * 2 1 3 18 18 C 1.54249 * 108.89622 * 176.23444 * 17 2 1 19 19 C 1.50547 * 108.48455 * 159.17772 * 18 17 2 20 20 C 1.54063 * 112.41417 * 94.27073 * 19 18 17 21 21 C 1.54065 * 112.81382 * 318.27517 * 20 19 18 22 22 C 1.50469 * 112.49912 * 318.28460 * 21 20 19 23 23 C 1.45544 * 108.89767 * 53.44470 * 17 2 1 24 24 H 1.09003 * 109.46986 * 293.58540 * 1 2 3 25 25 H 1.08998 * 109.47137 * 53.58531 * 1 2 3 26 26 H 1.09000 * 109.47306 * 173.58637 * 1 2 3 27 27 H 1.00901 * 111.00348 * 143.20021 * 4 2 1 28 28 H 1.08993 * 109.47082 * 53.74552 * 7 5 4 29 29 H 1.09004 * 109.46450 * 173.74258 * 7 5 4 30 30 H 1.08996 * 109.46940 * 293.73710 * 7 5 4 31 31 H 1.09005 * 109.46845 * 184.99705 * 8 5 4 32 32 H 1.08999 * 109.47183 * 304.99787 * 8 5 4 33 33 H 0.97002 * 120.00271 * 179.97438 * 12 11 9 34 34 H 1.09003 * 108.87232 * 294.83623 * 17 2 1 35 35 H 1.08994 * 109.62474 * 278.97873 * 18 17 2 36 36 H 1.09002 * 109.62249 * 39.55011 * 18 17 2 37 37 H 1.08998 * 108.92421 * 333.51246 * 19 18 17 38 38 H 1.08999 * 108.91758 * 215.01651 * 19 18 17 39 39 H 1.09002 * 108.81244 * 197.41913 * 20 19 18 40 40 H 1.08990 * 108.73128 * 79.07799 * 20 19 18 41 41 H 1.09008 * 108.87749 * 197.50913 * 21 20 19 42 42 H 1.09000 * 108.80064 * 79.01489 * 21 20 19 43 43 H 1.09004 * 109.63181 * 334.44989 * 22 21 20 44 44 H 1.08999 * 109.63382 * 213.86339 * 22 21 20 45 45 H 1.09002 * 108.89121 * 303.43996 * 23 17 2 46 46 H 1.08994 * 108.89090 * 61.93342 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.2592 0.2571 2.2945 6 1 2.3567 1.2636 1.8878 7 6 1.0839 0.2140 3.2732 8 6 3.5472 -0.1240 3.0272 9 6 4.7212 0.0368 2.0962 10 1 4.5643 0.3765 1.0830 11 6 5.9955 -0.2495 2.5377 12 7 6.1867 -0.6626 3.7716 13 14 7.4506 -0.0509 1.3833 14 1 7.9887 1.3284 1.4979 15 1 8.5089 -1.0268 1.7482 16 1 7.0113 -0.2964 -0.0138 17 6 2.0400 -0.7213 -1.2491 18 6 3.5794 -0.6311 -1.2846 19 6 4.1015 -1.7280 -2.1739 20 6 4.3277 -1.2527 -3.6218 21 6 3.1956 -0.3427 -4.1356 22 6 1.8326 -0.8343 -3.7297 23 6 1.4239 -0.1224 -2.4239 24 1 -0.3633 0.4112 0.9418 25 1 -0.3633 0.6100 -0.8270 26 1 -0.3634 -1.0212 -0.1148 27 1 2.8513 -1.2259 0.9950 28 1 0.9165 -0.8138 3.5949 29 1 1.3107 0.8339 4.1407 30 1 0.1875 0.5914 2.7813 31 1 3.6785 0.5254 3.8929 32 1 3.4844 -1.1609 3.3571 33 1 7.0832 -0.8644 4.0821 34 1 1.7490 -1.7704 -1.1940 35 1 3.8803 0.3385 -1.6812 36 1 3.9768 -0.7571 -0.2774 37 1 3.3848 -2.5492 -2.1801 38 1 5.0468 -2.0905 -1.7700 39 1 4.3993 -2.1253 -4.2710 40 1 5.2680 -0.7035 -3.6670 41 1 3.2449 -0.2986 -5.2236 42 1 3.3423 0.6605 -3.7354 43 1 1.8659 -1.9112 -3.5645 44 1 1.1115 -0.6034 -4.5137 45 1 0.3401 -0.1730 -2.3185 46 1 1.7224 0.9241 -2.4841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813137.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:00 Heat of formation + Delta-G solvation = -54.929179 kcal Electronic energy + Delta-G solvation = -20501.028410 eV Core-core repulsion = 17809.146631 eV Total energy + Delta-G solvation = -2691.881780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67253 -38.05144 -35.49796 -34.17938 -33.00694 -31.27532 -29.48216 -29.10062 -25.63988 -25.50358 -24.85635 -22.35358 -21.31720 -20.57985 -20.08993 -18.48273 -17.31143 -16.49845 -16.41854 -15.84368 -15.57423 -15.17396 -14.92288 -14.55200 -14.17427 -13.97750 -13.65793 -13.52657 -13.29886 -13.18431 -13.01667 -12.96937 -12.80023 -12.68379 -12.46594 -12.29300 -12.09836 -11.95449 -11.62924 -11.36239 -11.34595 -11.23086 -11.17258 -11.04813 -10.77964 -10.65839 -10.57696 -9.10278 -8.19554 -6.28454 1.35569 1.36653 1.46882 2.38079 3.12778 3.45863 3.73388 3.80691 3.97215 4.18830 4.24304 4.33170 4.37331 4.45039 4.49251 4.54837 4.63062 4.71522 4.72662 4.81802 4.84048 4.92352 4.95493 5.04170 5.09063 5.15926 5.18190 5.23142 5.28764 5.30937 5.35893 5.38541 5.41690 5.43408 5.47445 5.55100 5.57647 5.61376 5.68026 5.72277 5.84992 6.24010 6.54068 6.75585 6.87430 7.39982 8.92323 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.008689 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.911375 B = 3221.759133 C = 4795.968924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.083 3.917 3 H 0.025 0.975 4 N -0.679 5.679 5 C 0.096 3.904 6 H 0.027 0.973 7 C -0.126 4.126 8 C 0.021 3.979 9 C -0.526 4.526 10 H 0.065 0.935 11 C 0.008 3.992 12 N -0.931 5.931 13 Si 0.947 3.053 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.258 1.258 17 C -0.074 4.074 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.111 4.111 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.343 0.657 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.062 0.938 31 H -0.009 1.009 32 H -0.004 1.004 33 H 0.261 0.739 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 0.119 -15.504 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 H 0.043 0.957 4 N -0.313 5.313 5 C -0.014 4.014 6 H 0.045 0.955 7 C -0.184 4.184 8 C -0.017 4.017 9 C -0.564 4.564 10 H 0.083 0.917 11 C -0.190 4.190 12 N -0.571 5.571 13 Si 0.772 3.228 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.182 1.182 17 C -0.093 4.093 18 C -0.164 4.164 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.148 4.148 23 C -0.149 4.149 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.010 0.990 32 H 0.014 0.986 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.107 -0.109 -15.165 18.225 hybrid contribution 2.183 0.548 0.016 2.251 sum -7.924 0.439 -15.149 17.102 Atomic orbital electron populations 1.21869 0.93753 1.01999 1.01329 1.21800 0.96350 0.95079 0.89465 0.95724 1.60793 1.38168 1.25589 1.06760 1.21528 0.94485 0.93019 0.92377 0.95458 1.21770 0.97538 1.01130 0.97986 1.19303 0.92361 0.95019 0.95014 1.21594 0.92247 1.43880 0.98692 0.91677 1.25800 1.01825 0.95035 0.96358 1.70093 1.22447 1.46824 1.17753 0.85714 0.79267 0.77784 0.80031 1.20386 1.21091 1.18217 1.20205 0.94071 1.00385 0.94652 1.21584 0.95959 0.98964 0.99902 1.21283 1.00379 0.98273 0.95278 1.21901 0.98356 0.99759 0.95161 1.21332 0.94580 0.98847 1.00602 1.21294 0.96388 1.00424 0.96704 1.20583 1.01101 0.99372 0.93804 0.93366 0.91058 0.92286 0.83592 0.93211 0.93576 0.91940 0.99033 0.98606 0.92987 0.91199 0.92949 0.92672 0.91440 0.94123 0.91275 0.93355 0.91177 0.93138 0.91717 0.90463 0.90442 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.67 71.98 0.62 -2.76 16 2 C 0.08 2.60 2.21 44.91 0.10 2.70 16 3 H 0.02 0.86 7.16 -2.39 -0.02 0.84 16 4 N -0.68 -25.94 6.15 -469.46 -2.89 -28.83 16 5 C 0.10 4.05 2.68 44.92 0.12 4.17 16 6 H 0.03 1.19 7.10 -2.39 -0.02 1.18 16 7 C -0.13 -4.58 9.47 71.98 0.68 -3.90 16 8 C 0.02 1.08 4.44 29.85 0.13 1.21 16 9 C -0.53 -28.95 7.82 25.60 0.20 -28.75 16 10 H 0.07 3.44 5.96 -2.91 -0.02 3.42 16 11 C 0.01 0.45 5.46 84.65 0.46 0.91 16 12 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 13 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 17 C -0.07 -2.04 1.41 -12.65 -0.02 -2.06 16 18 C -0.13 -4.06 4.82 30.22 0.15 -3.91 16 19 C -0.11 -3.22 5.32 30.16 0.16 -3.06 16 20 C -0.11 -2.62 5.85 31.31 0.18 -2.44 16 21 C -0.12 -2.33 5.31 30.14 0.16 -2.17 16 22 C -0.11 -2.07 5.61 30.20 0.17 -1.90 16 23 C -0.11 -2.42 4.12 28.74 0.12 -2.30 16 24 H 0.05 1.30 6.33 -2.39 -0.02 1.28 16 25 H 0.07 1.50 6.64 -2.39 -0.02 1.48 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.34 14.56 5.02 -89.69 -0.45 14.11 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.06 1.95 6.39 -2.39 -0.02 1.94 16 31 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 32 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.07 1.95 7.47 -2.39 -0.02 1.93 16 35 H 0.05 1.71 6.96 -2.39 -0.02 1.69 16 36 H 0.05 2.19 3.96 -2.39 -0.01 2.18 16 37 H 0.07 1.75 6.63 -2.39 -0.02 1.73 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.05 1.12 6.62 -2.39 -0.02 1.10 16 43 H 0.06 1.24 6.98 -2.39 -0.02 1.22 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.49 6.01 -2.39 -0.01 1.47 16 46 H 0.05 1.21 7.47 -2.39 -0.02 1.20 16 Total: -1.00 -60.36 329.92 3.15 -57.22 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.48 Total: 25.91 kcal Atomic # 6 Polarization: -47.49 SS G_CDS: 3.24 Total: -44.25 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.60 Total: -85.12 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -60.36 3.15 -57.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813137.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.286 kcal (2) G-P(sol) polarization free energy of solvation -60.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds