Wall clock time and date at job start Sun Mar 29 2020 23:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86800 * 120.00014 * 2 1 4 4 H 1.48499 * 109.46954 * 239.99955 * 3 2 1 5 5 H 1.48504 * 109.46986 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47290 * 119.99706 * 3 2 1 7 7 C 1.38779 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00165 * 180.02562 * 7 2 1 9 9 O 1.34861 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.34895 * 117.00052 * 179.97438 * 9 7 2 11 11 O 1.21668 * 120.00263 * 0.02562 * 10 9 7 12 12 C 1.46339 * 119.99912 * 180.02562 * 10 9 7 13 13 C 1.36436 * 125.44768 * 180.02562 * 12 10 9 14 14 C 1.37901 * 114.01370 * 180.02562 * 13 12 10 15 15 C 1.35624 * 113.92561 * 359.97438 * 14 13 12 16 16 S 1.70355 * 111.20673 * 0.04134 * 15 14 13 17 17 C 1.51727 * 123.16208 * 179.97438 * 15 14 13 18 18 C 1.53354 * 107.99318 * 344.32860 * 17 15 14 19 19 O 1.43031 * 109.12329 * 47.87850 * 18 17 15 20 20 C 1.42999 * 114.15619 * 288.40402 * 19 18 17 21 21 H 0.96991 * 120.00219 * 0.02562 * 1 2 3 22 22 H 1.08004 * 122.99420 * 359.97438 * 13 12 10 23 23 H 1.09002 * 109.76541 * 224.68808 * 17 15 14 24 24 H 1.09001 * 109.76859 * 103.96852 * 17 15 14 25 25 H 1.09003 * 109.53412 * 167.77348 * 18 17 15 26 26 H 1.09004 * 109.53179 * 287.98666 * 18 17 15 27 27 H 1.09000 * 109.68784 * 171.74796 * 20 19 18 28 28 H 1.08998 * 109.69395 * 292.28675 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6964 -1.2125 5 1 1.2834 2.7465 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0083 -1.2019 0.0005 8 1 3.0883 -1.2019 0.0010 9 8 1.3341 -2.3698 0.0005 10 6 2.0688 -3.5011 0.0005 11 8 3.2838 -3.4375 0.0010 12 6 1.4044 -4.8050 0.0000 13 6 2.0355 -6.0146 0.0004 14 6 1.1783 -7.0949 -0.0009 15 6 -0.1347 -6.7551 -0.0018 16 16 -0.3334 -5.0632 -0.0022 17 6 -1.2563 -7.7768 -0.0038 18 6 -0.6605 -9.1337 -0.3985 19 8 0.5219 -9.3680 0.3715 20 6 1.6336 -8.5487 0.0006 21 1 -0.4850 0.8399 -0.0004 22 1 3.1107 -6.1171 0.0008 23 1 -2.0193 -7.4852 -0.7256 24 1 -1.6966 -7.8430 0.9912 25 1 -1.3866 -9.9221 -0.2003 26 1 -0.4092 -9.1266 -1.4592 27 1 2.4422 -8.6795 0.7198 28 1 1.9791 -8.8270 -0.9950 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728642579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:51 Heat of formation + Delta-G solvation = -95.894426 kcal Electronic energy + Delta-G solvation = -15906.125567 eV Core-core repulsion = 13014.169232 eV Total energy + Delta-G solvation = -2891.956335 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64627 -38.88779 -36.41664 -35.02666 -32.43429 -32.24059 -29.70257 -26.11028 -25.66893 -24.32436 -22.34148 -20.35694 -18.24382 -18.02189 -17.49912 -16.62119 -16.01797 -15.20833 -14.86793 -14.85518 -14.60978 -14.37766 -13.72535 -13.19447 -12.93669 -12.75689 -12.26366 -11.83536 -11.68114 -11.47554 -11.16309 -11.00441 -10.59710 -10.51426 -10.49350 -9.93367 -9.72023 -9.22678 -8.67549 -8.31656 -8.09722 -6.52500 -4.15196 0.85211 1.84192 2.33673 2.55239 3.13923 3.14074 3.18201 3.73764 3.85236 3.90303 4.43091 4.62152 4.82400 4.99266 5.06733 5.12458 5.29927 5.35227 5.51570 5.53297 5.71540 5.88577 6.07571 6.30146 6.60591 6.81679 7.02362 7.29326 7.83419 8.58835 8.95083 9.71425 10.64681 Molecular weight = 254.04amu Principal moments of inertia in cm(-1) A = 0.052591 B = 0.005077 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.285743 B = 5513.691819 C = 6005.694697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.374 4.374 8 H 0.099 0.901 9 O -0.204 6.204 10 C 0.459 3.541 11 O -0.545 6.545 12 C -0.206 4.206 13 C -0.076 4.076 14 C -0.159 4.159 15 C -0.236 4.236 16 S 0.262 5.738 17 C -0.078 4.078 18 C 0.066 3.934 19 O -0.379 6.379 20 C 0.130 3.870 21 H 0.273 0.727 22 H 0.149 0.851 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 -14.296 -1.130 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.163 4.163 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.450 4.450 8 H 0.117 0.883 9 O -0.111 6.111 10 C 0.307 3.693 11 O -0.444 6.444 12 C -0.325 4.325 13 C -0.107 4.107 14 C -0.173 4.173 15 C -0.355 4.355 16 S 0.534 5.466 17 C -0.117 4.117 18 C -0.012 4.012 19 O -0.298 6.298 20 C 0.051 3.949 21 H 0.083 0.917 22 H 0.166 0.834 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.124 0.876 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.749 -13.223 -0.982 14.084 hybrid contribution 1.672 0.165 -0.196 1.692 sum -3.077 -13.058 -1.178 13.468 Atomic orbital electron populations 1.69981 1.06085 1.28193 1.44967 1.25410 0.95899 0.99003 0.96031 0.85671 0.78645 0.78964 0.79521 1.19309 1.20222 1.19294 1.21294 0.92620 0.79541 1.51556 0.88326 1.83931 1.39027 1.13229 1.74961 1.19334 0.85584 0.84103 0.80322 1.90684 1.14402 1.87375 1.51945 1.23688 0.97269 0.95900 1.15671 1.20212 1.01084 0.89021 1.00431 1.19943 0.92187 0.97137 1.08076 1.24695 0.98550 1.01246 1.11058 1.83366 1.03156 0.94523 1.65566 1.20945 0.94669 0.92769 1.03331 1.22600 0.87415 0.95959 0.95239 1.87941 1.20753 1.60513 1.60548 1.21479 0.88511 0.84077 1.00813 0.91715 0.83377 0.89499 0.89454 0.88260 0.92603 0.87611 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.67 55.49 0.76 -23.94 15 2 C 0.04 1.17 5.49 -17.52 -0.10 1.07 15 3 Si 0.95 21.04 29.55 -169.99 -5.02 16.02 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 15 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 7 C -0.37 -11.09 9.65 30.93 0.30 -10.79 15 8 H 0.10 2.92 6.86 -52.49 -0.36 2.56 15 9 O -0.20 -5.97 9.59 -22.10 -0.21 -6.18 15 10 C 0.46 12.12 7.86 33.99 0.27 12.39 15 11 O -0.54 -15.34 16.08 -19.40 -0.31 -15.65 15 12 C -0.21 -4.39 6.44 -36.98 -0.24 -4.63 15 13 C -0.08 -1.37 9.84 -40.35 -0.40 -1.77 15 14 C -0.16 -2.45 5.84 -104.86 -0.61 -3.06 15 15 C -0.24 -3.54 6.23 -34.74 -0.22 -3.76 15 16 S 0.26 4.68 22.87 -107.50 -2.46 2.22 15 17 C -0.08 -0.87 6.52 -27.19 -0.18 -1.04 15 18 C 0.07 0.66 6.81 37.34 0.25 0.91 15 19 O -0.38 -4.74 10.72 -35.23 -0.38 -5.12 15 20 C 0.13 1.58 7.12 36.82 0.26 1.84 15 21 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 22 H 0.15 2.53 8.05 -52.48 -0.42 2.11 15 23 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 15 27 H 0.11 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 LS Contribution 267.62 15.07 4.03 4.03 Total: -1.00 -33.30 267.62 -6.70 -40.00 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -2.45 Total: -2.52 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.65 Total: -8.85 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.76 Total: -23.94 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.90 Total: -26.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -2.46 Total: 2.22 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.30 -6.70 -40.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728642579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.898 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds