Wall clock time and date at job start Sun Mar 29 2020 23:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48499 * 109.46968 * 239.99987 * 3 2 1 5 5 H 1.48502 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47390 * 119.99580 * 3 2 1 7 7 C 1.37875 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00111 * 175.14561 * 7 2 1 9 9 C 1.50703 * 119.99677 * 355.42805 * 7 2 1 10 10 C 1.52996 * 115.54808 * 274.92190 * 9 7 2 11 11 O 1.45201 * 109.47086 * 296.15922 * 10 9 7 12 12 C 1.34724 * 117.00152 * 184.87617 * 11 10 9 13 13 O 1.21485 * 120.00077 * 5.10963 * 12 11 10 14 14 C 1.47626 * 120.00260 * 185.10461 * 12 11 10 15 15 C 1.39404 * 124.12751 * 185.06177 * 14 12 11 16 16 N 1.30076 * 112.14353 * 179.97438 * 15 14 12 17 17 S 1.55922 * 108.76747 * 359.97438 * 16 15 14 18 18 N 1.31537 * 124.12481 * 4.75948 * 14 12 11 19 19 C 1.52993 * 117.49764 * 129.25565 * 9 7 2 20 20 C 1.52996 * 117.49962 * 60.59062 * 9 7 2 21 21 H 0.96995 * 119.99801 * 5.01056 * 1 2 3 22 22 H 1.09000 * 109.47130 * 56.15999 * 10 9 7 23 23 H 1.09003 * 109.47359 * 176.16325 * 10 9 7 24 24 H 1.07998 * 123.92803 * 359.95682 * 15 14 12 25 25 H 1.09003 * 117.50529 * 359.97438 * 19 9 7 26 26 H 1.08999 * 117.49941 * 145.02268 * 19 9 7 27 27 H 1.08999 * 117.49627 * 214.97553 * 20 9 7 28 28 H 1.08997 * 117.50162 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2547 -2.4970 0.1052 10 6 0.9189 -2.9527 1.5265 11 8 2.1480 -3.2133 2.2543 12 6 2.0275 -3.7221 3.4960 13 8 0.9324 -4.0289 3.9231 14 6 3.2262 -3.9070 4.3375 15 6 3.2154 -4.5171 5.5909 16 7 4.3999 -4.5571 6.1270 17 16 5.4163 -3.8940 5.1480 18 7 4.4359 -3.5213 3.9937 19 6 1.5732 -3.5802 -0.9273 20 6 0.2453 -2.8217 -0.9978 21 1 -0.4849 0.8368 -0.0734 22 1 0.3544 -2.1711 2.0349 23 1 0.3215 -3.8635 1.4845 24 1 2.3269 -4.9105 6.0622 25 1 2.3248 -3.3503 -1.6826 26 1 1.5430 -4.6175 -0.5941 27 1 -0.6577 -3.3605 -0.7109 28 1 0.1233 -2.0928 -1.7989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744278393.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:05 Heat of formation + Delta-G solvation = 3.827035 kcal Electronic energy + Delta-G solvation = -16126.287677 eV Core-core repulsion = 13270.948340 eV Total energy + Delta-G solvation = -2855.339337 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.11201 -39.37661 -36.80393 -35.36852 -33.65808 -31.94929 -28.14890 -26.67859 -25.27611 -23.32381 -21.16726 -20.35103 -19.52419 -19.27103 -17.41603 -16.72423 -16.29846 -15.82290 -15.24709 -15.12666 -14.57280 -13.85951 -13.21576 -12.40211 -12.32412 -12.26544 -11.67160 -11.44337 -11.26742 -11.07185 -10.94033 -10.90839 -10.58153 -10.38069 -10.23564 -9.98042 -9.54101 -9.33837 -8.92749 -8.45563 -8.22485 -6.05302 -4.12090 0.33565 1.26318 1.39928 1.48984 3.01462 3.08968 3.30988 3.35333 3.39098 4.38039 4.40088 4.99463 5.05088 5.22298 5.31358 5.40399 5.89776 6.17899 6.25467 6.31594 6.45764 6.60031 6.72788 6.98289 7.04165 7.31515 7.49010 7.87479 8.13880 8.38838 8.89819 9.53654 11.02439 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.006248 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.095071 B = 4480.513644 C = 5089.701544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.487 4.487 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.113 3.887 11 O -0.310 6.310 12 C 0.546 3.454 13 O -0.503 6.503 14 C 0.032 3.968 15 C 0.091 3.909 16 N -0.583 5.583 17 S 0.715 5.285 18 N -0.509 5.509 19 C -0.206 4.206 20 C -0.137 4.137 21 H 0.262 0.738 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.216 0.784 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.398 -7.657 8.755 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.524 4.524 8 H 0.081 0.919 9 C 0.032 3.968 10 C 0.040 3.960 11 O -0.223 6.223 12 C 0.384 3.616 13 O -0.392 6.392 14 C -0.141 4.141 15 C -0.102 4.102 16 N -0.424 5.424 17 S 0.757 5.243 18 N -0.359 5.359 19 C -0.243 4.243 20 C -0.174 4.174 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.065 0.935 24 H 0.233 0.767 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.949 -7.319 9.083 14.702 hybrid contribution -1.596 0.689 -0.138 1.744 sum 7.354 -6.629 8.946 13.344 Atomic orbital electron populations 1.69971 1.05842 1.27005 1.49232 1.25007 0.94884 0.99038 0.94512 0.86642 0.79629 0.82879 0.78809 1.20164 1.21300 1.20098 1.20361 0.92942 0.88211 1.50921 0.91895 1.18768 0.99800 0.93921 0.84265 1.23100 0.81325 0.98429 0.93117 1.86712 1.39477 1.71855 1.24287 1.19468 0.85373 0.75088 0.81689 1.90844 1.26487 1.48333 1.73555 1.21679 0.91028 1.05240 0.96186 1.23745 0.96296 0.98538 0.91659 1.72249 1.07876 1.25652 1.36591 1.79092 1.19176 1.33859 0.92216 1.72656 1.07559 1.22618 1.33056 1.23016 1.00333 0.95574 1.05360 1.22527 0.90838 1.01334 1.02733 0.92845 0.90590 0.93526 0.76729 0.90045 0.91607 0.91694 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.68 12.65 55.43 0.70 -23.98 15 2 C 0.07 1.87 5.43 -17.82 -0.10 1.77 15 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 7 C -0.49 -13.31 8.75 -34.44 -0.30 -13.61 15 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 15 9 C 0.03 0.82 1.70 -155.67 -0.26 0.55 15 10 C 0.11 2.64 5.39 37.16 0.20 2.84 15 11 O -0.31 -6.91 10.10 -40.56 -0.41 -7.32 15 12 C 0.55 10.51 7.95 34.56 0.27 10.78 15 13 O -0.50 -10.01 16.51 -19.25 -0.32 -10.33 15 14 C 0.03 0.51 6.82 -83.73 -0.57 -0.07 15 15 C 0.09 1.16 11.22 -17.86 -0.20 0.96 15 16 N -0.58 -7.03 11.41 19.44 0.22 -6.81 15 17 S 0.72 7.78 23.69 -107.50 -2.55 5.24 15 18 N -0.51 -7.94 11.44 23.20 0.27 -7.67 15 19 C -0.21 -4.49 9.96 -26.69 -0.27 -4.76 15 20 C -0.14 -3.15 9.15 -26.69 -0.24 -3.40 15 21 H 0.26 7.02 8.32 -40.82 -0.34 6.68 15 22 H 0.08 1.90 8.14 -51.93 -0.42 1.48 15 23 H 0.05 1.00 7.93 -51.93 -0.41 0.59 15 24 H 0.22 2.18 8.06 -52.49 -0.42 1.75 15 25 H 0.08 1.75 8.14 -51.93 -0.42 1.33 15 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.06 1.38 8.14 -51.93 -0.42 0.96 15 28 H 0.09 2.24 8.14 -51.93 -0.42 1.82 15 LS Contribution 275.86 15.07 4.16 4.16 Total: -1.00 -30.29 275.86 -6.91 -37.21 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -2.49 Total: -1.73 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.47 Total: -4.93 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 1.19 Total: -38.46 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.73 Total: -17.65 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 7.78 SS G_CDS: -2.55 Total: 5.24 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.29 -6.91 -37.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278393.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.034 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds