Wall clock time and date at job start Sun Mar 29 2020 23:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48499 * 109.46968 * 239.99987 * 3 2 1 5 5 H 1.48502 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47390 * 119.99580 * 3 2 1 7 7 C 1.37875 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00111 * 175.14561 * 7 2 1 9 9 C 1.50703 * 119.99677 * 355.42805 * 7 2 1 10 10 C 1.52996 * 115.54808 * 274.92190 * 9 7 2 11 11 O 1.45201 * 109.47086 * 296.15922 * 10 9 7 12 12 C 1.34724 * 117.00152 * 184.87617 * 11 10 9 13 13 O 1.21485 * 120.00077 * 5.10963 * 12 11 10 14 14 C 1.47626 * 120.00260 * 185.10461 * 12 11 10 15 15 C 1.39404 * 124.12751 * 185.06177 * 14 12 11 16 16 N 1.30076 * 112.14353 * 179.97438 * 15 14 12 17 17 S 1.55922 * 108.76747 * 359.97438 * 16 15 14 18 18 N 1.31537 * 124.12481 * 4.75948 * 14 12 11 19 19 C 1.52993 * 117.49764 * 129.25565 * 9 7 2 20 20 C 1.52996 * 117.49962 * 60.59062 * 9 7 2 21 21 H 0.96995 * 119.99801 * 5.01056 * 1 2 3 22 22 H 1.09000 * 109.47130 * 56.15999 * 10 9 7 23 23 H 1.09003 * 109.47359 * 176.16325 * 10 9 7 24 24 H 1.07998 * 123.92803 * 359.95682 * 15 14 12 25 25 H 1.09003 * 117.50529 * 359.97438 * 19 9 7 26 26 H 1.08999 * 117.49941 * 145.02268 * 19 9 7 27 27 H 1.08999 * 117.49627 * 214.97553 * 20 9 7 28 28 H 1.08997 * 117.50162 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2547 -2.4970 0.1052 10 6 0.9189 -2.9527 1.5265 11 8 2.1480 -3.2133 2.2543 12 6 2.0275 -3.7221 3.4960 13 8 0.9324 -4.0289 3.9231 14 6 3.2262 -3.9070 4.3375 15 6 3.2154 -4.5171 5.5909 16 7 4.3999 -4.5571 6.1270 17 16 5.4163 -3.8940 5.1480 18 7 4.4359 -3.5213 3.9937 19 6 1.5732 -3.5802 -0.9273 20 6 0.2453 -2.8217 -0.9978 21 1 -0.4849 0.8368 -0.0734 22 1 0.3544 -2.1711 2.0349 23 1 0.3215 -3.8635 1.4845 24 1 2.3269 -4.9105 6.0622 25 1 2.3248 -3.3503 -1.6826 26 1 1.5430 -4.6175 -0.5941 27 1 -0.6577 -3.3605 -0.7109 28 1 0.1233 -2.0928 -1.7989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278393.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:04 Heat of formation + Delta-G solvation = -15.278178 kcal Electronic energy + Delta-G solvation = -16127.116141 eV Core-core repulsion = 13270.948340 eV Total energy + Delta-G solvation = -2856.167801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.27949 -40.84331 -38.56318 -37.04493 -34.72874 -34.00754 -29.57175 -28.25584 -27.24145 -24.58353 -22.94729 -21.69094 -21.20893 -20.51521 -18.81871 -18.48962 -17.68952 -17.44935 -16.74167 -16.42341 -16.27154 -15.59707 -14.96559 -14.13317 -13.91538 -13.60118 -13.34935 -12.94586 -12.83405 -12.60699 -12.41578 -12.34012 -12.11458 -12.07655 -11.80158 -11.73783 -11.38431 -10.88714 -10.46209 -10.31679 -10.09181 -8.11989 -6.24327 -0.77584 0.21788 0.27600 0.53941 1.40932 1.42890 1.50043 1.62665 1.70246 2.41892 3.14564 3.27184 3.41814 3.69388 3.99620 4.11104 4.36499 4.40057 4.44105 4.64074 4.78986 4.97837 5.19349 5.27698 5.32999 5.52416 5.65048 5.75672 6.35547 6.60397 6.79668 7.43734 8.94956 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.006248 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.095071 B = 4480.513644 C = 5089.701544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.050 0.950 9 C -0.001 4.001 10 C 0.125 3.875 11 O -0.329 6.329 12 C 0.544 3.456 13 O -0.517 6.517 14 C 0.004 3.996 15 C 0.103 3.897 16 N -0.592 5.592 17 S 0.821 5.179 18 N -0.557 5.557 19 C -0.182 4.182 20 C -0.135 4.135 21 H 0.262 0.738 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.237 0.763 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 -8.295 9.758 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.068 0.932 9 C -0.001 4.001 10 C 0.052 3.948 11 O -0.244 6.244 12 C 0.384 3.616 13 O -0.406 6.406 14 C -0.166 4.166 15 C -0.088 4.088 16 N -0.434 5.434 17 S 0.861 5.139 18 N -0.411 5.411 19 C -0.219 4.219 20 C -0.172 4.172 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.253 0.747 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.378 -7.977 10.097 16.531 hybrid contribution -1.860 0.847 -0.362 2.075 sum 8.518 -7.130 9.735 14.770 Atomic orbital electron populations 1.70062 1.06858 1.27587 1.49969 1.25657 0.95663 1.01849 0.94312 0.85757 0.78566 0.79435 0.78790 1.19397 1.20747 1.20218 1.20572 0.92586 0.89924 1.51008 0.93207 1.18884 1.01273 0.94366 0.85601 1.22722 0.81765 0.98039 0.92297 1.86693 1.38832 1.72824 1.26006 1.19945 0.86664 0.74123 0.80898 1.90815 1.27454 1.48860 1.73516 1.21338 0.90063 1.08112 0.97055 1.23828 0.97158 0.97534 0.90316 1.72207 1.07999 1.26174 1.37034 1.78695 1.16245 1.29890 0.89052 1.72337 1.08392 1.24018 1.36325 1.23017 0.99203 0.96068 1.03585 1.22442 0.91974 1.01318 1.01510 0.92892 0.93484 0.92044 0.74732 0.89975 0.89118 0.90096 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.42 12.65 21.45 0.27 -51.15 15 2 C 0.03 1.41 5.43 84.65 0.46 1.87 15 3 Si 0.95 43.76 29.54 68.60 2.03 45.79 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 7 C -0.50 -27.93 8.75 25.60 0.22 -27.71 15 8 H 0.05 2.81 7.82 -2.91 -0.02 2.79 15 9 C 0.00 -0.04 1.70 -52.93 -0.09 -0.13 15 10 C 0.13 5.92 5.39 71.98 0.39 6.31 15 11 O -0.33 -14.88 10.10 -56.34 -0.57 -15.45 15 12 C 0.54 21.03 7.95 70.30 0.56 21.59 15 13 O -0.52 -20.63 16.51 19.88 0.33 -20.30 15 14 C 0.00 0.13 6.82 41.95 0.29 0.42 15 15 C 0.10 2.40 11.22 85.23 0.96 3.36 15 16 N -0.59 -12.59 11.41 -92.40 -1.05 -13.64 15 17 S 0.82 15.52 23.69 -56.49 -1.34 14.18 15 18 N -0.56 -16.63 11.44 -80.53 -0.92 -17.55 15 19 C -0.18 -7.76 9.96 30.62 0.30 -7.46 15 20 C -0.13 -6.21 9.15 30.62 0.28 -5.93 15 21 H 0.26 14.22 8.32 -92.71 -0.77 13.44 15 22 H 0.05 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.06 2.65 7.93 -2.39 -0.02 2.63 15 24 H 0.24 4.27 8.06 -2.91 -0.02 4.24 15 25 H 0.08 3.46 8.14 -2.39 -0.02 3.44 15 26 H 0.09 3.40 8.14 -2.39 -0.02 3.38 15 27 H 0.08 3.40 8.14 -2.39 -0.02 3.38 15 28 H 0.07 3.55 8.14 -2.39 -0.02 3.53 15 Total: -1.00 -65.09 275.86 3.30 -61.79 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.19 Total: 4.01 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 3.37 Total: -7.68 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.70 Total: -82.34 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.24 Total: -35.75 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 15.52 SS G_CDS: -1.34 Total: 14.18 kcal Total: -65.09 3.30 -61.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278393.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.508 kcal (2) G-P(sol) polarization free energy of solvation -65.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds