Wall clock time and date at job start Mon Mar 30 2020 00:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86804 * 120.00203 * 2 1 4 4 H 1.48499 * 109.46955 * 239.99926 * 3 2 1 5 5 H 1.48495 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47152 * 119.99908 * 3 2 1 7 7 C 1.37885 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99566 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46802 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47040 * 180.02562 * 10 9 7 12 12 C 1.34759 * 116.99914 * 180.02562 * 11 10 9 13 13 O 1.21522 * 120.00026 * 359.97438 * 12 11 10 14 14 C 1.47313 * 119.99703 * 179.97438 * 12 11 10 15 15 C 1.39877 * 120.11911 * 0.02562 * 14 12 11 16 16 C 1.37575 * 119.92849 * 180.23067 * 15 14 12 17 17 C 1.39123 * 120.16736 * 359.46966 * 16 15 14 18 18 O 1.35695 * 119.87905 * 180.25682 * 17 16 15 19 19 C 1.38845 * 120.23335 * 0.54779 * 17 16 15 20 20 C 1.38037 * 120.06896 * 359.71138 * 19 17 16 21 21 F 1.35096 * 120.08431 * 179.97438 * 20 19 17 22 22 H 0.96999 * 120.00148 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47279 * 60.00335 * 9 7 2 24 24 H 1.09000 * 109.47177 * 299.99779 * 9 7 2 25 25 H 1.08991 * 109.47080 * 59.99850 * 10 9 7 26 26 H 1.09000 * 109.47080 * 299.99845 * 10 9 7 27 27 H 1.08002 * 120.03050 * 359.94601 * 15 14 12 28 28 H 1.08002 * 119.91060 * 179.74026 * 16 15 14 29 29 H 0.96703 * 114.00096 * 270.28894 * 18 17 16 30 30 H 1.07994 * 119.96409 * 179.72597 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9196 -0.0001 12 6 2.2531 -6.0498 0.0004 13 8 3.4667 -5.9862 0.0008 14 6 1.5842 -7.3623 0.0004 15 6 0.1875 -7.4383 -0.0006 16 6 -0.4330 -8.6662 0.0042 17 6 0.3251 -9.8327 -0.0011 18 8 -0.2931 -11.0407 -0.0016 19 6 1.7119 -9.7652 0.0002 20 6 2.3447 -8.5385 0.0008 21 9 3.6940 -8.4725 0.0026 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8904 26 1 2.8718 -3.6044 -0.8895 27 1 -0.4030 -6.5341 -0.0005 28 1 -1.5114 -8.7245 0.0076 29 1 -0.4732 -11.3907 0.8817 30 1 2.2961 -10.6735 0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773573880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:37 Heat of formation + Delta-G solvation = -178.860702 kcal Electronic energy + Delta-G solvation = -17636.721766 eV Core-core repulsion = 14310.787662 eV Total energy + Delta-G solvation = -3325.934104 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.13780 -41.59856 -40.46854 -37.90018 -37.43407 -35.46036 -32.61542 -31.92285 -31.23875 -27.23528 -25.20395 -24.08522 -23.01565 -22.18168 -19.82946 -19.34367 -18.41713 -18.09771 -17.72564 -17.61417 -17.10858 -16.73814 -16.55396 -15.95986 -15.43857 -15.11442 -14.87386 -14.59305 -14.37333 -13.83111 -13.27001 -13.08806 -13.03585 -12.92240 -12.60727 -12.59667 -11.94989 -11.82252 -11.56784 -11.52921 -11.41318 -10.61195 -10.19851 -9.91284 -8.27497 -6.40601 -0.68491 -0.00881 1.28087 1.40400 1.44605 1.50750 1.58880 2.35193 2.39680 2.74857 3.06973 3.18083 3.51511 3.62974 3.88198 4.08048 4.18831 4.21257 4.51685 4.62178 4.70487 4.87639 4.99586 5.09890 5.20299 5.45143 5.45566 5.51137 5.71868 6.05693 6.57717 6.72217 6.74090 7.28951 8.84790 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.043410 B = 0.003909 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.855917 B = 7162.043126 C = 7783.906992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.091 3.909 11 O -0.353 6.353 12 C 0.497 3.503 13 O -0.537 6.537 14 C -0.196 4.196 15 C -0.013 4.013 16 C -0.157 4.157 17 C 0.193 3.807 18 O -0.493 6.493 19 C -0.192 4.192 20 C 0.162 3.838 21 F -0.131 7.131 22 H 0.269 0.731 23 H 0.010 0.990 24 H 0.011 0.989 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.158 0.842 28 H 0.177 0.823 29 H 0.427 0.573 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 -21.851 1.841 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.592 4.592 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.017 3.983 11 O -0.269 6.269 12 C 0.344 3.656 13 O -0.429 6.429 14 C -0.198 4.198 15 C -0.031 4.031 16 C -0.175 4.175 17 C 0.147 3.853 18 O -0.309 6.309 19 C -0.211 4.211 20 C 0.142 3.858 21 F -0.109 7.109 22 H 0.077 0.923 23 H 0.028 0.972 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.176 0.824 28 H 0.194 0.806 29 H 0.290 0.710 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.422 -21.631 1.261 21.802 hybrid contribution 0.892 1.105 0.443 1.488 sum -1.530 -20.526 1.704 20.653 Atomic orbital electron populations 1.70068 1.07712 1.28382 1.50161 1.25924 0.95851 1.03265 0.93992 0.85395 0.78230 0.77540 0.79256 1.19189 1.20319 1.19124 1.21341 0.93684 0.91302 1.52844 0.91862 1.18974 0.94243 0.90203 0.96986 1.23240 0.95280 0.78694 1.01036 1.86537 1.41741 1.15363 1.83281 1.21446 0.85546 0.85982 0.72632 1.90843 1.16101 1.88592 1.47379 1.19326 0.95823 0.88317 1.16330 1.21451 0.90759 1.00420 0.90456 1.21780 1.02977 0.89961 1.02831 1.18366 0.88658 0.86096 0.92160 1.84699 1.78721 1.31079 1.36371 1.21490 0.95811 0.96425 1.07355 1.17713 0.76774 0.93249 0.98050 1.91566 1.29229 1.97172 1.92920 0.92261 0.97200 0.97107 0.92182 0.92292 0.82415 0.80599 0.71033 0.81039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.95 13.28 21.45 0.28 -54.66 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -31.60 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.03 1.78 5.35 29.85 0.16 1.94 16 10 C 0.09 4.19 5.41 71.98 0.39 4.58 16 11 O -0.35 -14.59 9.46 -56.70 -0.54 -15.12 16 12 C 0.50 19.16 7.88 70.21 0.55 19.71 16 13 O -0.54 -23.76 15.12 19.76 0.30 -23.46 16 14 C -0.20 -5.69 5.88 -20.05 -0.12 -5.81 16 15 C -0.01 -0.27 9.60 22.51 0.22 -0.06 16 16 C -0.16 -2.29 9.96 22.33 0.22 -2.07 16 17 C 0.19 2.67 6.71 22.63 0.15 2.82 16 18 O -0.49 -4.36 13.48 -90.15 -1.22 -5.57 16 19 C -0.19 -3.33 9.95 22.37 0.22 -3.11 16 20 C 0.16 4.24 7.28 22.66 0.16 4.40 16 21 F -0.13 -4.12 15.54 44.97 0.70 -3.42 16 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 23 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.16 3.38 7.60 -2.91 -0.02 3.36 16 28 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 29 H 0.43 -0.78 9.06 -74.05 -0.67 -1.45 16 30 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -72.68 281.74 4.73 -67.96 By element: Atomic # 1 Polarization: -3.91 SS G_CDS: 0.51 Total: -3.40 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 2.66 Total: -7.99 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.45 Total: -44.16 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.70 Total: -3.42 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -72.68 4.73 -67.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773573880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.903 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds