Wall clock time and date at job start Sun Mar 29 2020 23:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38442 * 119.83222 * 2 1 4 4 C 1.37872 * 120.19055 * 180.02562 * 3 2 1 5 5 C 1.39715 * 119.85943 * 359.97015 * 4 3 2 6 6 C 1.47584 * 120.16453 * 180.02562 * 5 4 3 7 7 O 1.21513 * 119.99706 * 180.02562 * 6 5 4 8 8 O 1.34745 * 120.00027 * 359.97438 * 6 5 4 9 9 C 1.34854 * 116.99717 * 180.02562 * 8 6 5 10 10 H 1.08005 * 120.00227 * 0.02562 * 9 8 6 11 11 C 1.38811 * 119.99984 * 180.02562 * 9 8 6 12 12 N 1.31408 * 120.00255 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99692 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47122 * 90.00050 * 13 11 9 15 15 H 1.48498 * 109.46924 * 210.00318 * 13 11 9 16 16 H 1.48502 * 109.46963 * 329.99738 * 13 11 9 17 17 C 1.39787 * 119.66996 * 0.02562 * 5 4 3 18 18 Cl 1.73593 * 120.09543 * 180.02562 * 17 5 4 19 19 C 1.38139 * 119.80831 * 359.75406 * 17 5 4 20 20 C 1.50692 * 119.93441 * 180.27131 * 19 17 5 21 21 H 1.09002 * 109.47152 * 90.00282 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00382 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00363 * 1 2 3 24 24 H 1.08006 * 119.90256 * 359.97438 * 3 2 1 25 25 H 1.08004 * 120.06854 * 179.97438 * 4 3 2 26 26 H 0.97006 * 120.00223 * 180.02562 * 12 11 9 27 27 H 1.09002 * 109.46957 * 270.24922 * 20 19 17 28 28 H 1.09001 * 109.47377 * 30.24455 * 20 19 17 29 29 H 1.08996 * 109.47633 * 150.24935 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2010 0.0000 4 6 3.5744 1.2096 -0.0005 5 6 4.2776 0.0023 -0.0004 6 6 5.7534 0.0037 -0.0004 7 8 6.3619 -1.0481 -0.0008 8 8 6.4261 1.1712 -0.0010 9 6 7.7728 1.1018 -0.0015 10 1 8.2640 0.1399 -0.0019 11 6 8.5278 2.2666 -0.0016 12 7 9.8402 2.1991 -0.0026 13 14 7.6782 3.9303 -0.0004 14 1 7.4541 4.3706 1.4000 15 1 8.5324 4.9228 -0.7007 16 1 6.3727 3.8199 -0.6996 17 6 3.5763 -1.2069 -0.0004 18 17 4.4388 -2.7134 0.0004 19 6 2.1949 -1.1996 0.0048 20 6 1.4361 -2.5015 0.0111 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.6514 2.1338 -0.0004 25 1 4.1097 2.1476 -0.0009 26 1 10.3678 3.0131 -0.0023 27 1 1.2531 -2.8204 -1.0151 28 1 2.0220 -3.2611 0.5285 29 1 0.4842 -2.3648 0.5242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783270152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:31 Heat of formation + Delta-G solvation = -79.958074 kcal Electronic energy + Delta-G solvation = -16188.779263 eV Core-core repulsion = 13295.470274 eV Total energy + Delta-G solvation = -2893.308989 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.050 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.47406 -40.24846 -37.60669 -37.22563 -34.74099 -34.39099 -32.87052 -29.11287 -28.28918 -26.99224 -23.80364 -22.93139 -21.39108 -20.18917 -18.77591 -17.48324 -16.98638 -16.79534 -16.60755 -15.94903 -15.38679 -15.16770 -14.64403 -14.48533 -13.99290 -13.82980 -13.59157 -13.48142 -13.11369 -13.01217 -12.62356 -12.41109 -12.28651 -12.23743 -12.08595 -11.97343 -11.81387 -10.86228 -10.71343 -9.75470 -9.70750 -8.58061 -6.42604 -0.39797 0.12819 1.12922 1.31184 1.34302 1.52269 1.68026 2.22703 2.30794 2.56812 2.93637 3.63063 3.80486 3.98845 4.08672 4.11624 4.38383 4.64688 4.71421 4.73800 4.84369 4.95786 5.11935 5.16815 5.20139 5.33578 5.45000 5.47941 5.80067 5.85741 6.47882 6.77406 7.53464 8.54896 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.028329 B = 0.006987 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.136526 B = 4006.683390 C = 4974.368715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.043 4.043 3 C -0.114 4.114 4 C -0.072 4.072 5 C -0.129 4.129 6 C 0.441 3.559 7 O -0.547 6.547 8 O -0.249 6.249 9 C -0.405 4.405 10 H 0.057 0.943 11 C 0.015 3.985 12 N -0.915 5.915 13 Si 0.983 3.017 14 H -0.257 1.257 15 H -0.263 1.263 16 H -0.246 1.246 17 C -0.006 4.006 18 Cl -0.054 7.054 19 C -0.094 4.094 20 C -0.118 4.118 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.174 0.826 25 H 0.140 0.860 26 H 0.291 0.709 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.274 -0.822 -0.028 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.044 4.044 3 C -0.132 4.132 4 C -0.091 4.091 5 C -0.131 4.131 6 C 0.289 3.711 7 O -0.442 6.442 8 O -0.158 6.158 9 C -0.481 4.481 10 H 0.075 0.925 11 C -0.185 4.185 12 N -0.555 5.555 13 Si 0.802 3.198 14 H -0.182 1.182 15 H -0.188 1.188 16 H -0.169 1.169 17 C -0.034 4.034 18 Cl -0.024 7.024 19 C -0.095 4.095 20 C -0.174 4.174 21 H 0.112 0.888 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.192 0.808 25 H 0.157 0.843 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.812 -1.144 -0.030 23.840 hybrid contribution 1.401 -0.020 -0.003 1.401 sum -22.411 -1.164 -0.033 22.442 Atomic orbital electron populations 1.21057 0.86673 1.05093 1.04348 1.20437 0.98744 0.90647 0.94553 1.21491 0.92119 0.99980 0.99615 1.21592 0.95767 0.96128 0.95571 1.19055 0.88491 0.95130 1.10468 1.21483 0.89480 0.82310 0.77852 1.90725 1.70943 1.33000 1.49574 1.83518 1.20858 1.33112 1.78361 1.20354 0.77481 0.95991 1.54278 0.92548 1.25617 0.95364 1.03432 0.94048 1.69689 1.05963 1.32093 1.47705 0.85096 0.79364 0.75362 0.80023 1.18151 1.18791 1.16918 1.21130 0.92919 0.86147 1.03173 1.98373 1.77365 1.30446 1.96235 1.19921 0.89314 0.98728 1.01492 1.21013 1.00676 0.91619 1.04054 0.88841 0.89096 0.89248 0.80840 0.84261 0.89929 0.89404 0.91851 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.60 71.24 0.68 -0.41 15 2 C -0.04 -0.84 5.89 -19.80 -0.12 -0.96 15 3 C -0.11 -2.47 9.68 22.23 0.22 -2.25 15 4 C -0.07 -2.29 9.62 22.54 0.22 -2.07 15 5 C -0.13 -5.23 5.88 -20.08 -0.12 -5.35 15 6 C 0.44 23.27 7.83 70.29 0.55 23.82 15 7 O -0.55 -32.04 13.22 19.79 0.26 -31.78 15 8 O -0.25 -14.02 7.82 11.21 0.09 -13.93 15 9 C -0.41 -25.90 10.11 67.96 0.69 -25.21 15 10 H 0.06 4.10 7.09 -2.91 -0.02 4.08 15 11 C 0.02 0.92 5.50 84.89 0.47 1.38 15 12 N -0.91 -56.42 13.96 21.63 0.30 -56.12 15 13 Si 0.98 43.83 28.62 68.60 1.96 45.79 15 14 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 15 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 16 H -0.25 -10.33 7.11 99.48 0.71 -9.62 15 17 C -0.01 -0.23 6.35 22.62 0.14 -0.08 15 18 Cl -0.05 -2.04 24.36 -2.72 -0.07 -2.10 15 19 C -0.09 -2.33 5.88 -19.88 -0.12 -2.44 15 20 C -0.12 -2.06 9.19 71.23 0.65 -1.40 15 21 H 0.09 0.67 8.14 -2.39 -0.02 0.65 15 22 H 0.09 0.58 8.08 -2.39 -0.02 0.56 15 23 H 0.09 0.62 5.91 -2.38 -0.01 0.61 15 24 H 0.17 2.30 8.06 -2.91 -0.02 2.28 15 25 H 0.14 4.46 7.61 -2.91 -0.02 4.44 15 26 H 0.29 16.06 8.31 -92.70 -0.77 15.29 15 27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 28 H 0.06 1.27 6.91 -2.39 -0.02 1.25 15 29 H 0.11 1.16 5.92 -2.39 -0.01 1.14 15 Total: -1.00 -78.41 268.98 7.00 -71.41 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.18 Total: 1.71 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.27 Total: -14.97 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.30 Total: -56.12 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: 0.35 Total: -45.71 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.96 Total: 45.79 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.07 Total: -2.10 kcal Total: -78.41 7.00 -71.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783270152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.547 kcal (2) G-P(sol) polarization free energy of solvation -78.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds