Wall clock time and date at job start Sun Mar 29 2020 23:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86802 * 119.99931 * 2 1 4 4 H 1.48493 * 109.47007 * 269.99666 * 3 2 1 5 5 H 1.48499 * 109.47165 * 29.99999 * 3 2 1 6 6 H 1.48507 * 109.46735 * 149.99931 * 3 2 1 7 7 C 1.38752 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00329 * 0.02562 * 7 2 1 9 9 O 1.34923 * 119.99689 * 179.97438 * 7 2 1 10 10 C 1.34312 * 116.99953 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99662 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99992 * 180.02562 * 10 9 7 13 13 C 1.53006 * 109.46866 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 10 15 15 O 1.21453 * 119.99973 * 359.97438 * 14 13 12 16 16 C 1.41231 * 119.99910 * 179.97438 * 14 13 12 17 17 C 1.37187 * 125.48038 * 180.02562 * 16 14 13 18 18 C 1.37201 * 113.24327 * 180.02562 * 17 16 14 19 19 C 1.34023 * 115.14715 * 359.97438 * 18 17 16 20 20 S 1.70606 * 110.99900 * 359.72925 * 19 18 17 21 21 H 0.97003 * 119.99927 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00495 * 12 10 9 23 23 H 1.09000 * 109.47247 * 300.00204 * 12 10 9 24 24 H 1.09000 * 109.47050 * 299.99952 * 13 12 10 25 25 H 1.09001 * 109.46801 * 60.00064 * 13 12 10 26 26 H 1.08003 * 123.38240 * 359.97438 * 17 16 14 27 27 H 1.07998 * 122.42466 * 180.02562 * 18 17 16 28 28 H 1.07999 * 124.49714 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4459 2.6527 0.7000 6 1 3.5460 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4682 -2.1370 0.0005 9 8 3.3574 -1.2016 0.0000 10 6 3.9672 -2.3984 0.0011 11 8 3.3069 -3.4149 0.0020 12 6 5.4721 -2.4772 0.0012 13 6 5.9058 -3.9445 0.0019 14 6 7.4108 -4.0234 0.0014 15 8 8.0722 -3.0048 0.0000 16 6 8.0519 -5.2818 0.0024 17 6 9.4088 -5.4841 0.0025 18 6 9.7584 -6.8109 0.0031 19 6 8.7303 -7.6707 0.0039 20 16 7.2395 -6.8412 0.0116 21 1 -0.4850 0.8401 0.0004 22 1 5.8618 -1.9824 0.8907 23 1 5.8618 -1.9839 -0.8892 24 1 5.5161 -4.4382 0.8921 25 1 5.5161 -4.4390 -0.8879 26 1 10.1296 -4.6798 0.0015 27 1 10.7874 -7.1385 0.0037 28 1 8.8322 -8.7459 0.0048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797673058.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:07 Heat of formation + Delta-G solvation = -108.384795 kcal Electronic energy + Delta-G solvation = -15468.532028 eV Core-core repulsion = 12576.034070 eV Total energy + Delta-G solvation = -2892.497958 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36415 -40.68331 -38.34729 -37.52397 -34.52141 -34.06494 -31.38517 -28.52803 -26.95904 -25.16936 -22.31732 -21.13363 -20.20139 -20.11269 -19.13216 -18.09935 -17.37447 -16.91217 -16.78090 -16.22813 -15.91878 -15.57128 -15.04793 -14.52819 -14.45695 -14.01497 -13.69134 -13.68552 -13.18273 -13.17879 -13.02400 -12.43070 -12.28284 -12.24584 -11.86664 -11.81568 -11.15272 -10.99276 -10.84039 -9.89716 -9.56255 -8.55401 -6.41992 -0.72626 0.53992 0.98088 1.17266 1.27789 1.33850 1.51785 1.57152 1.92667 2.24270 2.31685 2.90485 3.21483 3.60333 4.00757 4.09635 4.27369 4.34811 4.40966 4.54517 4.62207 4.73318 4.88476 5.02728 5.24046 5.36126 5.48417 5.88417 6.38923 6.51646 6.81898 7.57907 8.57297 Molecular weight = 254.04amu Principal moments of inertia in cm(-1) A = 0.051497 B = 0.004144 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.589905 B = 6755.534714 C = 7278.674638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.409 4.409 8 H 0.061 0.939 9 O -0.261 6.261 10 C 0.411 3.589 11 O -0.570 6.570 12 C -0.084 4.084 13 C -0.153 4.153 14 C 0.436 3.564 15 O -0.483 6.483 16 C -0.342 4.342 17 C -0.042 4.042 18 C -0.167 4.167 19 C -0.211 4.211 20 S 0.242 5.758 21 H 0.289 0.711 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.154 0.846 27 H 0.171 0.829 28 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.177 -13.239 0.028 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.079 0.921 9 O -0.170 6.170 10 C 0.259 3.741 11 O -0.466 6.466 12 C -0.121 4.121 13 C -0.190 4.190 14 C 0.317 3.683 15 O -0.363 6.363 16 C -0.460 4.460 17 C -0.076 4.076 18 C -0.197 4.197 19 C -0.349 4.349 20 S 0.510 5.490 21 H 0.099 0.901 22 H 0.133 0.867 23 H 0.134 0.866 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.172 0.828 27 H 0.189 0.811 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 19.598 -13.352 0.041 23.714 hybrid contribution 0.975 0.737 -0.024 1.222 sum 20.572 -12.615 0.017 24.132 Atomic orbital electron populations 1.69704 1.07470 1.30187 1.48188 1.25564 0.96002 1.02686 0.94218 0.85096 0.78965 0.75971 0.79817 1.18457 1.18872 1.17656 1.20347 0.77740 0.95850 1.54518 0.92135 1.83543 1.22108 1.33032 1.78310 1.24248 0.92776 0.81358 0.75745 1.90572 1.68569 1.36991 1.50467 1.20975 0.85090 0.98800 1.07266 1.21845 0.93765 0.96670 1.06733 1.20011 0.90430 0.87058 0.70816 1.90584 1.68576 1.37974 1.39214 1.24083 0.99263 0.99594 1.23057 1.21286 0.93810 0.98737 0.93811 1.20308 1.02258 0.91143 1.05987 1.26033 0.97169 1.06785 1.04903 1.83458 1.06892 0.93514 1.65125 0.90086 0.86725 0.86634 0.87103 0.87074 0.82823 0.81147 0.78220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.87 13.96 21.62 0.30 -55.57 15 2 C 0.02 0.90 5.49 84.87 0.47 1.37 15 3 Si 0.98 44.59 28.62 68.60 1.96 46.55 15 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 5 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 6 H -0.25 -11.15 7.11 99.48 0.71 -10.44 15 7 C -0.41 -25.48 10.10 67.94 0.69 -24.80 15 8 H 0.06 4.25 7.09 -2.91 -0.02 4.23 15 9 O -0.26 -14.19 8.58 14.83 0.13 -14.06 15 10 C 0.41 19.54 7.91 71.24 0.56 20.11 15 11 O -0.57 -30.34 15.22 20.77 0.32 -30.02 15 12 C -0.08 -2.85 5.10 29.85 0.15 -2.70 15 13 C -0.15 -4.35 4.28 29.85 0.13 -4.23 15 14 C 0.44 11.58 6.93 26.42 0.18 11.77 15 15 O -0.48 -15.14 16.36 -3.57 -0.06 -15.20 15 16 C -0.34 -7.41 6.23 22.76 0.14 -7.27 15 17 C -0.04 -0.76 9.95 21.78 0.22 -0.54 15 18 C -0.17 -2.12 10.14 21.06 0.21 -1.91 15 19 C -0.21 -2.42 10.93 66.86 0.73 -1.69 15 20 S 0.24 3.97 22.42 -56.49 -1.27 2.70 15 21 H 0.29 15.90 8.31 -92.71 -0.77 15.13 15 22 H 0.11 3.60 8.10 -2.39 -0.02 3.58 15 23 H 0.12 3.61 8.10 -2.39 -0.02 3.59 15 24 H 0.11 3.08 8.10 -2.39 -0.02 3.06 15 25 H 0.11 3.08 8.10 -2.39 -0.02 3.06 15 26 H 0.15 2.66 8.02 -2.91 -0.02 2.63 15 27 H 0.17 1.22 8.06 -2.91 -0.02 1.20 15 28 H 0.20 1.01 8.06 -2.91 -0.02 0.98 15 Total: -1.00 -75.46 275.46 6.05 -69.41 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.18 Total: 6.07 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 3.48 Total: -9.89 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.30 Total: -55.57 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: 0.38 Total: -59.28 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.96 Total: 46.55 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.27 Total: 2.70 kcal Total: -75.46 6.05 -69.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797673058.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.975 kcal (2) G-P(sol) polarization free energy of solvation -75.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds