Wall clock time and date at job start Sun Mar 29 2020 23:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48504 * 109.47199 * 270.00561 * 3 2 1 5 5 H 1.48498 * 109.47292 * 30.00350 * 3 2 1 6 6 H 1.48500 * 109.46892 * 150.00549 * 3 2 1 7 7 C 1.37873 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00573 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47362 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47036 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00088 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99843 * 180.27669 * 11 10 9 14 14 C 1.39410 * 119.99934 * 174.63354 * 13 11 10 15 15 C 1.38998 * 119.68600 * 185.09938 * 14 13 11 16 16 C 1.38400 * 119.13278 * 179.76985 * 15 14 13 17 17 C 1.38784 * 118.50696 * 0.50152 * 16 15 14 18 18 C 1.38251 * 119.29574 * 359.74310 * 17 16 15 19 19 Cl 1.73602 * 119.58766 * 179.97438 * 18 17 16 20 20 N 1.32026 * 120.81756 * 0.02562 * 18 17 16 21 21 H 0.97005 * 119.99868 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46791 * 60.00052 * 9 7 2 23 23 H 1.09000 * 109.46804 * 300.00675 * 9 7 2 24 24 H 1.09000 * 109.47427 * 60.00072 * 10 9 7 25 25 H 1.09000 * 109.47410 * 299.99934 * 10 9 7 26 26 H 0.97002 * 119.99894 * 354.62718 * 13 11 10 27 27 H 1.08000 * 120.43673 * 0.02562 * 15 14 13 28 28 H 1.07999 * 120.75105 * 180.21407 * 16 15 14 29 29 H 1.07996 * 120.35222 * 179.76993 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0021 13 7 2.1655 -6.1344 0.0044 14 6 1.4726 -7.3388 0.1167 15 6 2.1782 -8.5311 0.2288 16 6 1.4787 -9.7197 0.3445 17 6 0.0916 -9.6757 0.3335 18 6 -0.5456 -8.4546 0.2136 19 17 -2.2804 -8.3908 0.1984 20 7 0.1489 -7.3366 0.1096 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8896 24 1 2.8719 -3.6044 0.8894 25 1 2.8719 -3.6044 -0.8905 26 1 3.1327 -6.1363 -0.0699 27 1 3.2582 -8.5297 0.2298 28 1 2.0004 -10.6608 0.4366 29 1 -0.4840 -10.5856 0.4182 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813031021.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:07 Heat of formation + Delta-G solvation = -3.822661 kcal Electronic energy + Delta-G solvation = -15593.461327 eV Core-core repulsion = 12735.746568 eV Total energy + Delta-G solvation = -2857.714759 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.74916 -38.81495 -36.63009 -34.67275 -33.49887 -32.59466 -31.16571 -29.83041 -25.96547 -23.99806 -23.42598 -21.55665 -19.79375 -18.17760 -17.11186 -16.40870 -16.15931 -15.47978 -15.33903 -14.99735 -14.43317 -14.28038 -13.52853 -13.26409 -12.63213 -12.40160 -12.19360 -11.79762 -11.25948 -11.20826 -10.95015 -10.61960 -10.56935 -10.00147 -9.99940 -9.81766 -9.63414 -9.14153 -8.83777 -8.35306 -8.28638 -5.97153 -4.02205 0.82128 1.10913 1.78475 3.02462 3.07605 3.32741 3.38972 3.41339 3.73307 4.37138 4.46591 4.72997 4.82994 4.91167 5.10024 5.37759 5.39924 5.66846 5.88681 6.03972 6.13212 6.13746 6.65101 6.78582 7.25803 7.72064 7.82332 7.93896 8.04608 8.35117 8.63789 9.05896 9.61506 11.13697 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.037416 B = 0.004239 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.169298 B = 6604.076836 C = 7327.556176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.126 4.126 11 C 0.494 3.506 12 O -0.458 6.458 13 N -0.669 5.669 14 C 0.391 3.609 15 C -0.215 4.215 16 C -0.035 4.035 17 C -0.200 4.200 18 C 0.212 3.788 19 Cl -0.031 7.031 20 N -0.473 5.473 21 H 0.261 0.739 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.417 0.583 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 -21.228 0.604 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.166 4.166 11 C 0.281 3.719 12 O -0.324 6.324 13 N -0.317 5.317 14 C 0.159 3.841 15 C -0.239 4.239 16 C -0.061 4.061 17 C -0.223 4.223 18 C 0.046 3.954 19 Cl -0.002 7.002 20 N -0.190 5.190 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.254 0.746 27 H 0.160 0.840 28 H 0.163 0.837 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.742 -20.124 0.533 20.476 hybrid contribution 1.221 0.178 0.027 1.234 sum 4.962 -19.946 0.560 20.562 Atomic orbital electron populations 1.70001 1.06061 1.26655 1.49927 1.25030 0.94833 0.99269 0.95256 0.86577 0.79739 0.83473 0.78067 1.20660 1.21204 1.19890 1.21182 0.92914 0.90902 1.51700 0.92544 1.18926 0.93142 0.89255 0.98830 1.21927 1.00847 0.91065 1.02810 1.22027 0.89306 0.85050 0.75506 1.90811 1.13672 1.86249 1.41655 1.44271 1.10907 1.03904 1.72615 1.18408 0.87341 0.86496 0.91887 1.21561 1.01408 0.91693 1.09271 1.21289 0.93028 0.98207 0.93606 1.21669 0.95276 0.97526 1.07848 1.21458 0.87725 0.89296 0.96939 1.98412 1.06928 1.98613 1.96274 1.66903 1.06504 1.29494 1.16128 0.92889 0.95658 0.95677 0.89825 0.89886 0.74595 0.83994 0.83665 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.49 13.29 55.43 0.74 -26.75 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.04 0.96 4.26 -27.89 -0.12 0.84 15 10 C -0.13 -2.49 5.64 -27.88 -0.16 -2.64 15 11 C 0.49 9.56 7.79 -10.98 -0.09 9.48 15 12 O -0.46 -11.12 14.25 5.56 0.08 -11.04 15 13 N -0.67 -9.51 5.39 -11.43 -0.06 -9.57 15 14 C 0.39 5.70 7.42 -154.70 -1.15 4.55 15 15 C -0.22 -2.13 9.94 -39.24 -0.39 -2.52 15 16 C -0.04 -0.30 10.17 -39.32 -0.40 -0.70 15 17 C -0.20 -2.09 9.87 -39.37 -0.39 -2.47 15 18 C 0.21 3.09 7.27 -17.46 -0.13 2.97 15 19 Cl -0.03 -0.44 29.10 -51.86 -1.51 -1.95 15 20 N -0.47 -8.38 7.87 -9.48 -0.07 -8.45 15 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 22 H 0.03 0.74 8.10 -51.93 -0.42 0.32 15 23 H 0.02 0.74 8.10 -51.93 -0.42 0.32 15 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 15 25 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 26 H 0.42 3.96 8.70 -40.82 -0.36 3.60 15 27 H 0.14 0.90 8.06 -52.49 -0.42 0.48 15 28 H 0.15 0.68 8.06 -52.49 -0.42 0.26 15 29 H 0.14 1.08 8.06 -52.49 -0.42 0.66 15 LS Contribution 279.09 15.07 4.21 4.21 Total: -1.00 -36.07 279.09 -7.72 -43.80 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -2.85 Total: -2.73 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -3.23 Total: -4.11 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.60 Total: -44.78 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.51 Total: -1.95 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -36.07 -7.72 -43.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813031021.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.972 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds