Wall clock time and date at job start Sun Mar 29 2020 23:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.81400 * 103.00172 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47227 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47312 * 180.02562 * 12 11 10 14 14 H 1.09005 * 115.54918 * 29.41780 * 13 12 11 15 15 C 1.53000 * 117.49934 * 243.74977 * 13 12 11 16 16 C 1.52999 * 117.50137 * 175.08611 * 13 12 11 17 17 Cl 1.80297 * 117.50051 * 214.97990 * 16 13 12 18 18 Cl 1.80299 * 117.49789 * 359.97438 * 16 13 12 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 21 21 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 22 22 H 1.09002 * 109.47039 * 300.00231 * 11 10 9 23 23 H 1.08998 * 109.46606 * 59.99932 * 11 10 9 24 24 H 1.09002 * 109.47273 * 300.00055 * 12 11 10 25 25 H 1.09006 * 109.47207 * 60.00111 * 12 11 10 26 26 H 1.08997 * 117.50056 * 359.97438 * 15 13 12 27 27 H 1.09003 * 117.50066 * 145.02249 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3517 -5.3367 0.0013 12 6 2.2086 -6.6042 0.0020 13 6 1.2993 -7.8346 0.0021 14 1 0.3311 -7.7036 -0.4814 15 6 1.3616 -8.7591 1.2196 16 6 1.9667 -9.2064 -0.1135 17 17 1.0915 -10.4829 -1.0383 18 17 3.7648 -9.2494 -0.2400 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6242 -2.5567 0.8904 21 1 0.6248 -2.5571 -0.8896 22 1 0.7228 -5.3232 0.8915 23 1 0.7223 -5.3236 -0.8885 24 1 2.8378 -6.6179 -0.8879 25 1 2.8378 -6.6170 0.8921 26 1 2.0508 -8.4910 2.0203 27 1 0.4346 -9.2368 1.5368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842597467.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:46 Heat of formation + Delta-G solvation = -14.498478 kcal Electronic energy + Delta-G solvation = -11919.481063 eV Core-core repulsion = 9469.330637 eV Total energy + Delta-G solvation = -2450.150427 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 253.999 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.53632 -36.27337 -35.94484 -33.51866 -31.97984 -28.08248 -24.45455 -22.93131 -22.48201 -20.81233 -17.13085 -16.61376 -15.82971 -14.97085 -14.76864 -13.92185 -13.68486 -13.41398 -13.04396 -12.69994 -12.53821 -12.15603 -11.75234 -11.63287 -11.41959 -11.35969 -11.12295 -10.76769 -10.60583 -10.38228 -10.13594 -9.90173 -9.17736 -8.82419 -8.56489 -6.83327 -6.55366 -4.27173 0.91976 1.91893 2.48154 2.93178 3.39550 3.41147 3.59182 3.70077 3.86557 4.05755 4.43788 4.78163 4.89114 5.17767 5.22122 5.22636 5.29985 5.53166 5.75604 5.95959 6.15685 6.72770 6.77981 7.78784 8.24759 8.63042 9.42309 10.84686 Molecular weight = 254.00amu Principal moments of inertia in cm(-1) A = 0.054736 B = 0.003615 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.422210 B = 7742.590203 C = 8047.649329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.592 4.592 8 H 0.061 0.939 9 C 0.075 3.925 10 S -0.288 6.288 11 C -0.092 4.092 12 C -0.074 4.074 13 C -0.106 4.106 14 H 0.130 0.870 15 C -0.142 4.142 16 C -0.002 4.002 17 Cl -0.101 7.101 18 Cl -0.090 7.090 19 H 0.268 0.732 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 -19.378 0.993 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.631 4.631 8 H 0.080 0.920 9 C -0.072 4.072 10 S -0.061 6.061 11 C -0.240 4.240 12 C -0.112 4.112 13 C -0.127 4.127 14 H 0.148 0.852 15 C -0.179 4.179 16 C -0.054 4.054 17 Cl -0.074 7.074 18 Cl -0.063 7.063 19 H 0.078 0.922 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.140 0.860 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.832 -17.805 0.904 18.051 hybrid contribution -1.154 -2.012 -0.139 2.324 sum 1.678 -19.817 0.765 19.903 Atomic orbital electron populations 1.70812 1.06843 1.30523 1.45872 1.25975 0.96373 1.02594 0.93194 0.83427 0.74813 0.74526 0.76881 1.20548 1.21103 1.21102 1.21553 0.94786 0.89779 1.56944 0.92047 1.21088 0.94498 0.92928 0.98709 1.86657 1.20214 1.01218 1.97993 1.23204 1.00639 0.95955 1.04217 1.21014 0.96449 0.89325 1.04421 1.23392 1.00948 0.88769 0.99551 0.85220 1.24108 1.03092 0.99841 0.90896 1.26883 0.81987 0.94222 1.02282 1.98745 1.75846 1.56118 1.76683 1.98754 1.10882 1.98378 1.98325 0.92216 0.95622 0.95621 0.90737 0.90764 0.89625 0.90084 0.85970 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.01 13.65 55.43 0.76 -26.25 15 2 C 0.02 0.69 5.46 -17.82 -0.10 0.60 15 3 Si 1.08 24.90 29.90 -169.99 -5.08 19.82 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.59 -16.87 9.13 -34.44 -0.31 -17.18 15 8 H 0.06 1.77 7.71 -52.48 -0.40 1.37 15 9 C 0.07 1.92 5.01 36.00 0.18 2.10 15 10 S -0.29 -6.14 21.66 -107.50 -2.33 -8.47 15 11 C -0.09 -1.42 5.90 37.16 0.22 -1.20 15 12 C -0.07 -0.92 4.59 -26.73 -0.12 -1.04 15 13 C -0.11 -1.04 5.57 -90.62 -0.51 -1.55 15 14 H 0.13 1.19 8.08 -51.93 -0.42 0.77 15 15 C -0.14 -1.15 9.87 -26.69 -0.26 -1.42 15 16 C 0.00 -0.02 3.62 -26.69 -0.10 -0.12 15 17 Cl -0.10 -1.01 29.29 -51.86 -1.52 -2.53 15 18 Cl -0.09 -0.99 28.23 -51.86 -1.46 -2.45 15 19 H 0.27 7.90 7.22 -40.82 -0.29 7.60 15 20 H 0.03 0.67 8.01 -51.92 -0.42 0.26 15 21 H 0.03 0.68 8.01 -51.93 -0.42 0.26 15 22 H 0.07 1.11 8.14 -51.92 -0.42 0.68 15 23 H 0.07 1.12 8.14 -51.92 -0.42 0.70 15 24 H 0.09 1.13 8.02 -51.93 -0.42 0.72 15 25 H 0.08 1.01 7.88 -51.93 -0.41 0.60 15 26 H 0.12 0.93 8.03 -51.93 -0.42 0.51 15 27 H 0.12 0.79 8.14 -51.93 -0.42 0.36 15 LS Contribution 280.58 15.07 4.23 4.23 Total: -1.00 -29.79 280.58 -9.67 -39.46 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -3.26 Total: -4.01 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -1.00 Total: -19.80 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.76 Total: -26.25 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Atomic # 16 Polarization: -6.14 SS G_CDS: -2.33 Total: -8.47 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -2.98 Total: -4.98 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.79 -9.67 -39.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842597467.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.960 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds