Wall clock time and date at job start Sun Mar 29 2020 22:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47144 * 2 1 4 4 C 1.52994 * 109.47673 * 239.99841 * 2 1 3 5 5 C 1.50699 * 109.47194 * 64.99785 * 4 2 1 6 6 H 1.07998 * 119.99805 * 359.72651 * 5 4 2 7 7 C 1.37881 * 120.00367 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99461 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00183 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47093 * 59.99864 * 9 7 5 11 11 H 1.48501 * 109.47090 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47141 * 300.00052 * 9 7 5 13 13 C 1.53003 * 109.46887 * 119.99677 * 2 1 3 14 14 N 1.46893 * 109.47452 * 296.76813 * 13 2 1 15 15 C 1.48702 * 111.00161 * 298.28037 * 14 13 2 16 16 C 1.57055 * 105.04651 * 171.00381 * 15 14 13 17 17 C 1.54547 * 105.29561 * 130.94936 * 16 15 14 18 18 C 1.54618 * 116.68453 * 302.19976 * 17 16 15 19 19 C 1.57126 * 105.21799 * 302.27848 * 18 17 16 20 20 C 1.54614 * 105.22115 * 130.69471 * 19 18 17 21 21 C 1.54546 * 116.69387 * 302.27780 * 20 19 18 22 22 C 1.48694 * 111.00295 * 163.49748 * 14 13 2 23 23 H 1.09000 * 109.47728 * 299.99930 * 1 2 3 24 24 H 1.09005 * 109.47099 * 60.00553 * 1 2 3 25 25 H 1.09003 * 109.46777 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47279 * 305.00211 * 4 2 1 27 27 H 1.08995 * 109.47591 * 185.00367 * 4 2 1 28 28 H 0.97004 * 119.99308 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47346 * 56.77314 * 13 2 1 30 30 H 1.09006 * 109.47099 * 176.76864 * 13 2 1 31 31 H 1.09000 * 110.31673 * 289.88450 * 15 14 13 32 32 H 1.09006 * 110.31636 * 52.12452 * 15 14 13 33 33 H 1.09000 * 110.27168 * 12.01049 * 16 15 14 34 34 H 1.08997 * 110.39953 * 249.95770 * 16 15 14 35 35 H 1.09003 * 108.00860 * 180.37822 * 17 16 15 36 36 H 1.08997 * 108.00628 * 64.01679 * 17 16 15 37 37 H 1.09000 * 110.28839 * 183.35766 * 18 17 16 38 38 H 1.08998 * 110.41765 * 61.27275 * 18 17 16 39 39 H 1.09002 * 110.28154 * 11.77547 * 19 18 17 40 40 H 1.09000 * 110.41660 * 249.68777 * 19 18 17 41 41 H 1.09008 * 108.00774 * 180.45582 * 20 19 18 42 42 H 1.09004 * 108.00769 * 64.09909 * 20 19 18 43 43 H 1.09000 * 110.27295 * 183.24695 * 21 20 19 44 44 H 1.08999 * 110.39408 * 61.19490 * 21 20 19 45 45 H 1.09002 * 110.32392 * 191.30805 * 22 14 13 46 46 H 1.08996 * 110.32241 * 313.56019 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6414 0.0570 -2.4765 6 1 1.0765 0.9719 -2.3759 7 6 1.9925 -0.4023 -3.7283 8 7 2.6749 -1.5198 -3.8511 9 14 1.4990 0.5627 -5.2496 10 1 2.0920 1.9227 -5.1871 11 1 1.9929 -0.1380 -6.4621 12 1 0.0190 0.6703 -5.3091 13 6 2.0399 -0.7212 1.2493 14 7 1.6151 0.0149 2.4474 15 6 2.1902 1.3861 2.4624 16 6 1.4716 2.1167 3.6525 17 6 2.6058 2.7700 4.4743 18 6 3.7007 1.8247 5.0204 19 6 2.9353 0.7723 5.9011 20 6 3.4560 -0.6056 5.4313 21 6 3.2791 -0.9406 3.9330 22 6 1.7356 -0.8318 3.6638 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7199 -1.2951 27 1 3.1263 -0.7995 -1.2054 28 1 2.9223 -1.8427 -4.7317 29 1 1.6301 -1.7308 1.2788 30 1 3.1284 -0.7717 1.2209 31 1 3.2652 1.3437 2.6379 32 1 1.9786 1.8956 1.5222 33 1 0.9282 1.3970 4.2646 34 1 0.7913 2.8799 3.2745 35 1 2.1539 3.2869 5.3209 36 1 3.0892 3.5181 3.8461 37 1 4.4116 2.3822 5.6302 38 1 4.2171 1.3267 4.1998 39 1 1.8612 0.8481 5.7321 40 1 3.1627 0.9225 6.9565 41 1 2.9452 -1.3744 6.0111 42 1 4.5190 -0.6621 5.6659 43 1 3.6276 -1.9530 3.7286 44 1 3.8215 -0.2235 3.3168 45 1 1.2369 -0.3553 4.5078 46 1 1.3128 -1.8196 3.4809 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877569177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:58 Heat of formation + Delta-G solvation = -30.064721 kcal Electronic energy + Delta-G solvation = -20032.509064 eV Core-core repulsion = 17341.705489 eV Total energy + Delta-G solvation = -2690.803576 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.93919 -37.43259 -35.35383 -34.39578 -33.75233 -29.79614 -28.63547 -28.11994 -26.85332 -25.26009 -24.83159 -22.66976 -21.04070 -20.36710 -20.01776 -18.47492 -17.13740 -16.80976 -16.48463 -15.82627 -15.63474 -15.09622 -14.71374 -14.50991 -14.31191 -14.19887 -13.84327 -13.55104 -13.27221 -13.07966 -12.96391 -12.73948 -12.64148 -12.50800 -12.22256 -12.14260 -11.98623 -11.95993 -11.74282 -11.58303 -11.34623 -11.19463 -11.10358 -11.01059 -10.81353 -10.76721 -10.51122 -8.73173 -8.16212 -6.25450 1.40026 1.43065 1.50694 2.42698 2.96501 3.16913 3.83452 3.93530 3.99965 4.09927 4.20147 4.23005 4.26382 4.36015 4.38709 4.48759 4.58210 4.59268 4.70323 4.83917 4.87897 4.95051 4.96019 4.98789 5.00377 5.06839 5.10452 5.13107 5.22042 5.24527 5.31980 5.40263 5.40642 5.49576 5.51678 5.52653 5.54383 5.59451 5.62411 5.84696 5.91253 6.25035 6.37649 6.52359 6.90434 7.42679 8.95716 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.004476 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.582928 B = 6254.093357 C = 6526.755227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.074 4.074 3 H 0.052 0.948 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.086 3.914 14 N -0.581 5.581 15 C 0.069 3.931 16 C -0.108 4.108 17 C -0.121 4.121 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.156 4.156 22 C 0.076 3.924 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.033 0.967 26 H -0.012 1.012 27 H -0.019 1.019 28 H 0.261 0.739 29 H 0.058 0.942 30 H 0.009 0.991 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 5.746 20.808 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.042 4.042 14 N -0.307 5.307 15 C -0.057 4.057 16 C -0.145 4.145 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.195 4.195 22 C -0.050 4.050 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.006 0.994 27 H 0.000 1.000 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.110 5.721 20.691 21.496 hybrid contribution 1.048 -0.171 -1.319 1.693 sum -0.062 5.550 19.373 20.152 Atomic orbital electron populations 1.21431 0.94726 1.00162 1.00264 1.21076 0.96652 0.98383 0.93171 0.92972 1.19002 0.93794 0.94627 0.92965 1.21606 1.34267 1.08659 0.92093 0.92204 1.25952 0.95267 0.96069 1.02621 1.70106 1.40383 1.22935 1.24281 0.85570 0.78966 0.78773 0.78172 1.19259 1.20982 1.19191 1.21792 0.95902 0.96717 0.89802 1.60276 1.64514 1.03249 1.02644 1.23288 0.96280 0.87158 0.99019 1.22683 0.96857 0.99390 0.95607 1.22110 0.96087 0.98330 0.99392 1.22757 0.97057 0.97302 0.98993 1.22768 1.00267 0.93430 0.99004 1.22032 1.00737 0.97829 0.94756 1.23295 0.98448 1.00631 0.97112 1.23418 0.94088 0.96175 0.91327 0.91464 0.94713 0.94785 0.99393 1.00024 0.92981 0.92362 0.97262 0.94445 0.91858 0.90150 0.91159 0.91771 0.93560 0.91040 0.92664 0.90792 0.90511 0.92182 0.93384 0.92339 0.92587 0.88543 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.27 8.88 71.98 0.64 -3.63 16 2 C -0.07 -3.14 2.17 -10.80 -0.02 -3.16 16 3 H 0.05 2.24 6.14 -2.39 -0.01 2.23 16 4 C 0.03 1.83 4.45 29.85 0.13 1.96 16 5 C -0.53 -30.55 8.41 25.60 0.22 -30.33 16 6 H 0.06 3.33 7.05 -2.91 -0.02 3.31 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 8 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 9 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.09 3.08 4.02 86.31 0.35 3.43 16 14 N -0.58 -16.46 3.46 -869.36 -3.00 -19.47 16 15 C 0.07 1.84 5.12 87.38 0.45 2.29 16 16 C -0.11 -2.21 5.92 32.54 0.19 -2.02 16 17 C -0.12 -2.14 4.84 31.67 0.15 -1.99 16 18 C -0.12 -2.14 5.82 32.60 0.19 -1.95 16 19 C -0.12 -1.79 5.83 32.59 0.19 -1.60 16 20 C -0.12 -2.00 4.84 31.67 0.15 -1.85 16 21 C -0.16 -3.47 5.21 32.54 0.17 -3.31 16 22 C 0.08 1.74 5.63 87.38 0.49 2.23 16 23 H 0.07 2.30 7.70 -2.39 -0.02 2.29 16 24 H 0.03 1.45 6.94 -2.38 -0.02 1.44 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 27 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 28 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.06 2.12 7.80 -2.39 -0.02 2.10 16 30 H 0.01 0.35 7.60 -2.38 -0.02 0.33 16 31 H 0.04 1.03 4.45 -2.39 -0.01 1.02 16 32 H 0.06 1.95 6.02 -2.38 -0.01 1.93 16 33 H 0.08 1.58 4.57 -2.39 -0.01 1.57 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.15 4.55 -2.39 -0.01 1.14 16 39 H 0.07 1.13 4.53 -2.39 -0.01 1.12 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 1.46 4.22 -2.39 -0.01 1.45 16 45 H 0.10 1.88 4.45 -2.39 -0.01 1.87 16 46 H 0.07 1.68 7.85 -2.39 -0.02 1.67 16 Total: -1.00 -63.21 325.93 4.00 -59.20 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.93 Total: 10.65 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 3.76 Total: -39.58 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -2.72 Total: -77.47 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.21 4.00 -59.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877569177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.139 kcal (2) G-P(sol) polarization free energy of solvation -63.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds