Wall clock time and date at job start Mon Mar 30 2020 00:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47120 * 2 1 4 4 C 1.50699 * 109.47285 * 119.99831 * 2 1 3 5 5 H 1.08006 * 119.99950 * 119.99938 * 4 2 1 6 6 C 1.37875 * 120.00378 * 300.00343 * 4 2 1 7 7 N 1.31517 * 119.99585 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00250 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47088 * 89.99986 * 8 6 4 10 10 H 1.48502 * 109.47363 * 209.99987 * 8 6 4 11 11 H 1.48492 * 109.47325 * 330.00284 * 8 6 4 12 12 C 1.50700 * 109.47230 * 240.00015 * 2 1 3 13 13 O 1.21286 * 119.99980 * 240.00109 * 12 2 1 14 14 N 1.34782 * 119.99684 * 60.00048 * 12 2 1 15 15 C 1.39948 * 119.99625 * 185.26707 * 14 12 2 16 16 C 1.38892 * 120.48419 * 212.57567 * 15 14 12 17 17 N 1.31783 * 120.69291 * 179.70288 * 16 15 14 18 18 C 1.31870 * 121.81003 * 0.27491 * 17 16 15 19 19 C 1.38352 * 120.90476 * 359.97438 * 18 17 16 20 20 Cl 1.73592 * 120.39842 * 180.02562 * 19 18 17 21 21 C 1.38658 * 119.20717 * 0.02562 * 19 18 17 22 22 H 1.08999 * 109.46955 * 299.99613 * 1 2 3 23 23 H 1.08994 * 109.47001 * 60.00037 * 1 2 3 24 24 H 1.08997 * 109.46817 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99531 * 180.02562 * 7 6 4 26 26 H 0.96994 * 120.00085 * 5.26585 * 14 12 2 27 27 H 1.08005 * 119.64829 * 359.97438 * 16 15 14 28 28 H 1.08010 * 119.54812 * 179.97438 * 18 17 16 29 29 H 1.07998 * 120.82518 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6298 -0.5458 4.4124 10 1 1.3432 -0.9493 5.1120 11 1 2.4861 -2.5661 3.7119 12 6 2.0324 -0.7104 -1.2305 13 8 2.7297 -1.6965 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.0798 -0.9700 -3.5951 16 6 2.3860 -0.3084 -4.7773 17 7 2.7433 -0.9821 -5.8521 18 6 2.8197 -2.2986 -5.8537 19 6 2.5252 -3.0289 -4.7162 20 17 2.6307 -4.7616 -4.7329 21 6 2.1448 -2.3604 -3.5625 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7095 1.1617 3.4844 26 1 1.2139 0.5806 -2.5450 27 1 2.3349 0.7698 -4.8148 28 1 3.1162 -2.8138 -6.7556 29 1 1.9087 -2.9044 -2.6600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895075920.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:18 Heat of formation + Delta-G solvation = -13.449384 kcal Electronic energy + Delta-G solvation = -16036.298557 eV Core-core repulsion = 13178.166352 eV Total energy + Delta-G solvation = -2858.132205 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.63720 -38.84678 -36.65712 -34.72515 -33.96237 -31.90884 -30.90363 -29.41530 -25.28618 -24.22527 -23.62450 -22.14426 -19.72159 -17.92226 -16.96130 -16.65801 -16.18300 -15.76934 -14.88587 -14.57906 -14.36320 -14.03201 -13.33628 -13.01939 -12.72965 -12.50849 -12.07770 -11.76124 -11.26865 -11.13193 -10.91658 -10.82014 -10.69372 -10.38942 -10.09333 -9.84841 -9.31901 -9.13656 -8.82453 -8.47819 -8.16787 -6.15358 -4.19698 0.88230 1.17627 1.98550 3.24731 3.27995 3.33312 3.35484 3.44611 3.76485 4.37259 4.44281 4.74149 4.90221 5.05332 5.18312 5.20678 5.77106 5.96431 6.08938 6.21981 6.45748 6.64637 6.72227 6.85710 7.27789 7.56180 7.72138 7.79225 7.93136 8.16264 8.78846 8.89519 9.46726 10.92209 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.005296 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.763614 B = 5285.426891 C = 5921.340461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.033 3.967 3 H 0.058 0.942 4 C -0.507 4.507 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.519 3.481 13 O -0.519 6.519 14 N -0.681 5.681 15 C 0.134 3.866 16 C 0.065 3.935 17 N -0.450 5.450 18 C 0.076 3.924 19 C -0.064 4.064 20 Cl -0.058 7.058 21 C -0.080 4.080 22 H 0.097 0.903 23 H 0.014 0.986 24 H 0.033 0.967 25 H 0.263 0.737 26 H 0.413 0.587 27 H 0.163 0.837 28 H 0.162 0.838 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 -2.649 -13.636 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.012 3.988 3 H 0.076 0.924 4 C -0.545 4.545 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.391 6.391 14 N -0.328 5.328 15 C 0.034 3.966 16 C -0.096 4.096 17 N -0.158 5.158 18 C -0.082 4.082 19 C -0.094 4.094 20 Cl -0.029 7.029 21 C -0.109 4.109 22 H 0.116 0.884 23 H 0.033 0.967 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.250 0.750 27 H 0.181 0.819 28 H 0.179 0.821 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.184 -2.933 -14.050 14.354 hybrid contribution -0.139 -0.579 1.594 1.701 sum 0.045 -3.512 -12.456 12.942 Atomic orbital electron populations 1.21778 0.96033 1.00122 1.01318 1.18930 0.94375 0.97060 0.88457 0.92431 1.21096 1.31508 1.13095 0.88817 0.90660 1.24938 0.94906 0.95016 0.99194 1.69857 1.36736 1.22937 1.23822 0.86418 0.78513 0.80250 0.81871 1.20565 1.21187 1.19685 1.22492 0.77782 0.84710 0.84021 1.90571 1.35859 1.26555 1.86160 1.44179 1.57540 1.26791 1.04286 1.18906 0.97316 0.91286 0.89052 1.22707 0.98345 1.00566 0.87972 1.67718 1.11963 1.07952 1.28175 1.22578 0.99271 0.89521 0.96872 1.21948 1.05013 0.86095 0.96300 1.98372 1.96649 1.09172 1.98699 1.21646 0.97786 0.93127 0.98360 0.88447 0.96714 0.94788 0.92760 0.74981 0.81935 0.82076 0.82407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.87 37.16 0.33 -2.53 15 2 C 0.03 0.76 2.64 -92.92 -0.24 0.51 15 3 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 4 C -0.51 -13.65 8.37 -34.44 -0.29 -13.94 15 5 H 0.08 2.14 6.75 -52.48 -0.35 1.79 15 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 15 7 N -0.89 -24.07 11.32 55.43 0.63 -23.44 15 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 12 C 0.52 10.84 6.91 -10.98 -0.08 10.76 15 13 O -0.52 -12.42 13.16 5.55 0.07 -12.35 15 14 N -0.68 -10.86 5.21 -9.77 -0.05 -10.91 15 15 C 0.13 2.05 6.31 -83.54 -0.53 1.52 15 16 C 0.06 0.85 11.12 -17.33 -0.19 0.66 15 17 N -0.45 -6.11 10.35 -13.06 -0.14 -6.24 15 18 C 0.08 0.97 10.98 -17.49 -0.19 0.78 15 19 C -0.06 -0.90 6.34 -39.38 -0.25 -1.15 15 20 Cl -0.06 -0.74 28.99 -51.86 -1.50 -2.24 15 21 C -0.08 -1.30 8.57 -39.06 -0.33 -1.64 15 22 H 0.10 2.31 6.07 -51.93 -0.32 2.00 15 23 H 0.01 0.24 7.69 -51.93 -0.40 -0.16 15 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.26 6.77 8.31 -40.82 -0.34 6.43 15 26 H 0.41 5.25 8.41 -40.82 -0.34 4.91 15 27 H 0.16 1.65 8.06 -52.48 -0.42 1.22 15 28 H 0.16 1.60 8.06 -52.48 -0.42 1.18 15 29 H 0.16 2.89 6.49 -52.49 -0.34 2.55 15 LS Contribution 271.42 15.07 4.09 4.09 Total: -1.00 -29.28 271.42 -6.37 -35.64 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -2.58 Total: 2.83 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.87 Total: -3.50 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.44 Total: -40.59 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.28 -6.37 -35.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895075920.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.195 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds