Wall clock time and date at job start Sun Mar 29 2020 23:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47405 * 300.00007 * 3 2 1 6 6 H 1.48500 * 109.47035 * 60.00407 * 3 2 1 7 7 C 1.38825 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.36895 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.38506 * 119.99867 * 179.72939 * 9 7 2 11 11 N 1.33108 * 120.61162 * 359.71300 * 10 9 7 12 12 C 1.31921 * 120.62025 * 179.66419 * 11 10 9 13 13 N 1.31105 * 122.69835 * 0.69389 * 12 11 10 14 14 C 1.35120 * 121.19335 * 359.63327 * 13 12 11 15 15 N 1.33373 * 129.50006 * 180.02562 * 14 13 12 16 16 C 1.29442 * 118.01001 * 179.97438 * 15 14 13 17 17 S 1.76200 * 124.90587 * 179.97438 * 16 15 14 18 18 S 1.75918 * 110.18490 * 359.97438 * 16 15 14 19 19 C 1.39863 * 120.60494 * 180.02562 * 10 9 7 20 20 H 0.96999 * 120.00048 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99796 * 359.97438 * 9 7 2 22 22 H 1.07998 * 118.65348 * 180.30573 * 12 11 10 23 23 H 1.40999 * 100.00049 * 89.97214 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8907 2.3964 1.2126 7 6 2.0096 -1.2023 -0.0005 8 1 3.0896 -1.2024 -0.0010 9 7 1.3252 -2.3878 -0.0005 10 6 2.0178 -3.5873 -0.0067 11 7 3.3487 -3.6014 -0.0185 12 6 4.0086 -4.7437 -0.0177 13 7 3.4075 -5.9089 -0.0190 14 6 2.0595 -6.0009 -0.0138 15 7 1.2832 -7.0854 -0.0137 16 6 0.0001 -6.9146 -0.0075 17 16 -1.1901 -8.2139 -0.0068 18 16 -0.3836 -5.1978 0.0001 19 6 1.3313 -4.8059 -0.0074 20 1 -0.4850 0.8400 0.0004 21 1 0.3551 -2.3878 0.0002 22 1 5.0883 -4.7181 -0.0224 23 1 -1.3489 -8.3997 1.3818 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534723.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:55 Heat of formation + Delta-G solvation = 90.126077 kcal Electronic energy + Delta-G solvation = -13643.231268 eV Core-core repulsion = 11130.846666 eV Total energy + Delta-G solvation = -2512.384602 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 253.999 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24348 -37.50520 -35.81850 -32.77672 -30.91507 -29.58102 -25.81629 -24.90430 -23.30071 -21.39286 -19.02456 -18.13351 -17.75488 -16.37241 -16.23525 -15.58552 -14.98901 -14.83889 -14.25291 -13.84748 -13.42677 -12.94702 -12.20884 -11.92148 -11.83116 -11.30396 -11.04294 -10.91902 -10.61070 -9.82836 -9.76749 -9.64546 -8.98692 -8.74143 -8.31907 -8.14800 -7.50231 -7.08651 -4.22771 0.40160 1.08089 1.69371 1.89762 2.03964 2.29962 2.85044 2.97287 3.04347 3.06553 3.69717 4.29754 4.36944 4.46098 4.91608 5.19779 5.43692 5.77496 6.18144 6.89739 6.99998 7.31587 7.61147 8.00991 8.27082 8.68047 8.83917 9.37876 10.04308 Molecular weight = 254.00amu Principal moments of inertia in cm(-1) A = 0.033179 B = 0.006291 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.702257 B = 4449.770360 C = 5277.302034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.277 4.277 8 H 0.128 0.872 9 N -0.479 5.479 10 C 0.386 3.614 11 N -0.589 5.589 12 C 0.364 3.636 13 N -0.593 5.593 14 C 0.337 3.663 15 N -0.416 5.416 16 C 0.077 3.923 17 S -0.034 6.034 18 S 0.125 5.875 19 C -0.316 4.316 20 H 0.286 0.714 21 H 0.409 0.591 22 H 0.187 0.813 23 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.967 -5.445 0.760 6.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.410 4.410 8 H 0.146 0.854 9 N -0.083 5.083 10 C 0.132 3.868 11 N -0.324 5.324 12 C 0.068 3.932 13 N -0.326 5.326 14 C 0.087 3.913 15 N -0.135 5.135 16 C -0.317 4.317 17 S 0.118 5.882 18 S 0.369 5.631 19 C -0.450 4.450 20 H 0.096 0.904 21 H 0.246 0.754 22 H 0.203 0.797 23 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.594 -5.701 0.518 6.759 hybrid contribution 0.521 1.425 0.919 1.774 sum -3.073 -4.277 1.437 5.459 Atomic orbital electron populations 1.69670 1.06513 1.30165 1.43495 1.25724 0.95941 1.01192 0.95582 0.85488 0.79919 0.78955 0.78387 1.18237 1.19951 1.19995 1.20378 0.94702 0.81251 1.44677 0.85433 1.41236 1.08526 1.02611 1.55908 1.17242 0.88396 0.83061 0.98101 1.68169 1.04774 1.29845 1.29636 1.24174 0.99785 0.81565 0.87664 1.68054 1.05224 1.29062 1.30245 1.19119 0.91627 0.83982 0.96588 1.66192 1.02422 1.31362 1.13514 1.27936 0.95676 0.98492 1.09561 1.86773 1.45266 1.43325 1.12864 1.84698 1.03999 1.02769 1.71588 1.24723 0.97204 1.00728 1.22299 0.90353 0.75431 0.79673 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.69 13.05 55.49 0.72 -19.97 14 2 C 0.02 0.56 5.50 -17.45 -0.10 0.46 14 3 Si 0.95 18.07 29.55 -169.99 -5.02 13.04 14 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 14 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 14 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 7 C -0.28 -6.70 9.72 -15.07 -0.15 -6.85 14 8 H 0.13 3.11 7.11 -52.49 -0.37 2.74 14 9 N -0.48 -11.36 5.41 -10.95 -0.06 -11.42 14 10 C 0.39 8.99 7.47 -154.62 -1.16 7.83 14 11 N -0.59 -13.39 9.27 -13.85 -0.13 -13.52 14 12 C 0.36 7.43 12.22 -92.63 -1.13 6.30 14 13 N -0.59 -13.13 10.50 -14.59 -0.15 -13.28 14 14 C 0.34 7.51 8.12 -157.53 -1.28 6.23 14 15 N -0.42 -8.57 10.57 -12.20 -0.13 -8.70 14 16 C 0.08 1.34 7.88 51.76 0.41 1.74 14 17 S -0.03 -0.44 26.28 -107.50 -2.82 -3.27 14 18 S 0.13 2.23 23.06 -107.50 -2.48 -0.25 14 19 C -0.32 -6.90 6.48 -38.34 -0.25 -7.15 14 20 H 0.29 6.35 8.31 -40.82 -0.34 6.01 14 21 H 0.41 9.54 7.59 -40.82 -0.31 9.23 14 22 H 0.19 2.95 8.06 -52.49 -0.42 2.53 14 23 H 0.11 1.13 9.55 96.90 0.93 2.05 14 LS Contribution 247.02 15.07 3.72 3.72 Total: -1.00 -27.24 247.02 -9.31 -36.56 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.68 Total: 8.51 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -3.65 Total: 8.58 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: 0.25 Total: -66.89 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.02 Total: 13.04 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -5.30 Total: -3.51 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.24 -9.31 -36.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534723.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.681 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds