Wall clock time and date at job start Sun Mar 29 2020 23:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47405 * 300.00007 * 3 2 1 6 6 H 1.48500 * 109.47035 * 60.00407 * 3 2 1 7 7 C 1.38825 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.36895 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.38506 * 119.99867 * 179.72939 * 9 7 2 11 11 N 1.33108 * 120.61162 * 359.71300 * 10 9 7 12 12 C 1.31921 * 120.62025 * 179.66419 * 11 10 9 13 13 N 1.31105 * 122.69835 * 0.69389 * 12 11 10 14 14 C 1.35120 * 121.19335 * 359.63327 * 13 12 11 15 15 N 1.33373 * 129.50006 * 180.02562 * 14 13 12 16 16 C 1.29442 * 118.01001 * 179.97438 * 15 14 13 17 17 S 1.76200 * 124.90587 * 179.97438 * 16 15 14 18 18 S 1.75918 * 110.18490 * 359.97438 * 16 15 14 19 19 C 1.39863 * 120.60494 * 180.02562 * 10 9 7 20 20 H 0.96999 * 120.00048 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99796 * 359.97438 * 9 7 2 22 22 H 1.07998 * 118.65348 * 180.30573 * 12 11 10 23 23 H 1.40999 * 100.00049 * 89.97214 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8907 2.3964 1.2126 7 6 2.0096 -1.2023 -0.0005 8 1 3.0896 -1.2024 -0.0010 9 7 1.3252 -2.3878 -0.0005 10 6 2.0178 -3.5873 -0.0067 11 7 3.3487 -3.6014 -0.0185 12 6 4.0086 -4.7437 -0.0177 13 7 3.4075 -5.9089 -0.0190 14 6 2.0595 -6.0009 -0.0138 15 7 1.2832 -7.0854 -0.0137 16 6 0.0001 -6.9146 -0.0075 17 16 -1.1901 -8.2139 -0.0068 18 16 -0.3836 -5.1978 0.0001 19 6 1.3313 -4.8059 -0.0074 20 1 -0.4850 0.8400 0.0004 21 1 0.3551 -2.3878 0.0002 22 1 5.0883 -4.7181 -0.0224 23 1 -1.3489 -8.3997 1.3818 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534723.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:55 Heat of formation + Delta-G solvation = 73.566269 kcal Electronic energy + Delta-G solvation = -13643.949356 eV Core-core repulsion = 11130.846666 eV Total energy + Delta-G solvation = -2513.102689 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 253.999 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.89277 -39.12429 -37.50694 -34.49202 -32.61026 -31.23938 -27.46174 -26.53926 -24.93312 -23.02656 -20.67620 -19.75539 -19.15172 -18.01733 -17.66558 -17.13963 -16.59583 -16.52016 -15.67798 -15.46551 -14.98980 -14.53036 -13.78455 -13.53193 -13.43171 -12.73614 -12.69426 -12.37304 -12.08853 -11.47966 -11.40080 -11.15829 -10.58370 -10.35921 -9.89777 -9.37374 -9.13545 -8.78541 -6.04744 -1.06958 -0.25715 0.22927 0.30552 0.49753 1.01266 1.41924 1.45599 1.57301 1.61246 2.12748 2.63849 2.75896 2.78702 3.19963 3.56990 3.80046 4.17883 4.53166 5.17314 5.33628 5.62267 5.96142 6.33325 6.55196 6.93474 7.11520 7.67298 8.36381 Molecular weight = 254.00amu Principal moments of inertia in cm(-1) A = 0.033179 B = 0.006291 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.702257 B = 4449.770360 C = 5277.302034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.011 4.011 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.309 4.309 8 H 0.118 0.882 9 N -0.495 5.495 10 C 0.388 3.612 11 N -0.608 5.608 12 C 0.362 3.638 13 N -0.603 5.603 14 C 0.324 3.676 15 N -0.443 5.443 16 C 0.094 3.906 17 S -0.002 6.002 18 S 0.162 5.838 19 C -0.356 4.356 20 H 0.290 0.710 21 H 0.406 0.594 22 H 0.228 0.772 23 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 -6.581 0.979 7.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.216 4.216 3 Si 0.833 3.167 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.441 4.441 8 H 0.136 0.864 9 N -0.100 5.100 10 C 0.134 3.866 11 N -0.343 5.343 12 C 0.068 3.932 13 N -0.334 5.334 14 C 0.073 3.927 15 N -0.162 5.162 16 C -0.300 4.300 17 S 0.149 5.851 18 S 0.407 5.593 19 C -0.488 4.488 20 H 0.100 0.900 21 H 0.242 0.758 22 H 0.244 0.756 23 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.062 -6.843 0.739 7.992 hybrid contribution 0.568 1.378 0.881 1.731 sum -3.495 -5.465 1.620 6.686 Atomic orbital electron populations 1.69726 1.07549 1.30984 1.45050 1.26513 0.96658 1.03628 0.94768 0.84575 0.78599 0.75115 0.78425 1.18168 1.19505 1.19511 1.20404 0.94461 0.82064 1.47134 0.86422 1.41197 1.08279 1.02671 1.57861 1.17588 0.88973 0.83583 0.96491 1.68217 1.05043 1.31081 1.29972 1.24991 1.01388 0.80588 0.86253 1.68106 1.05713 1.29781 1.29828 1.19493 0.92021 0.84826 0.96319 1.66387 1.03404 1.30835 1.15611 1.28818 0.95704 1.00113 1.05357 1.86755 1.42284 1.40730 1.15345 1.84562 1.01055 1.02757 1.70910 1.24827 0.99772 1.00064 1.24162 0.90005 0.75771 0.75629 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.82 13.05 21.65 0.28 -43.54 14 2 C -0.01 -0.53 5.50 84.88 0.47 -0.06 14 3 Si 1.01 37.32 29.55 68.60 2.03 39.35 14 4 H -0.26 -9.34 7.11 99.48 0.71 -8.64 14 5 H -0.27 -9.68 7.11 99.48 0.71 -8.97 14 6 H -0.27 -9.66 7.11 99.48 0.71 -8.96 14 7 C -0.31 -15.37 9.72 84.04 0.82 -14.56 14 8 H 0.12 5.92 7.11 -2.91 -0.02 5.90 14 9 N -0.50 -24.14 5.41 -188.54 -1.02 -25.16 14 10 C 0.39 18.36 7.47 133.20 1.00 19.35 14 11 N -0.61 -27.83 9.27 -197.73 -1.83 -29.66 14 12 C 0.36 14.56 12.22 181.05 2.21 16.77 14 13 N -0.60 -26.24 10.50 -200.07 -2.10 -28.34 14 14 C 0.32 14.25 8.12 134.24 1.09 15.34 14 15 N -0.44 -17.57 10.57 -192.50 -2.03 -19.60 14 16 C 0.09 3.05 7.88 130.59 1.03 4.08 14 17 S 0.00 -0.05 26.28 -56.49 -1.48 -1.53 14 18 S 0.16 5.59 23.06 -56.49 -1.30 4.28 14 19 C -0.36 -15.50 6.48 23.08 0.15 -15.35 14 20 H 0.29 13.05 8.31 -92.71 -0.77 12.28 14 21 H 0.41 19.55 7.59 -92.70 -0.70 18.85 14 22 H 0.23 6.80 8.06 -2.91 -0.02 6.77 14 23 H 0.14 2.28 9.55 73.80 0.70 2.99 14 Total: -1.00 -59.00 247.02 0.60 -58.40 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 1.31 Total: 20.23 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: 6.76 Total: 25.58 kcal Atomic # 7 Polarization: -139.60 SS G_CDS: -6.71 Total: -146.31 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -2.79 Total: 2.75 kcal Total: -59.00 0.60 -58.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534723.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.965 kcal (2) G-P(sol) polarization free energy of solvation -59.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds