Wall clock time and date at job start Mon Mar 30 2020 00:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86800 * 120.00543 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72482 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71977 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72237 * 3 2 1 7 7 C 1.38848 * 119.99775 * 179.72073 * 2 1 3 8 8 H 1.07999 * 120.00210 * 180.27521 * 7 2 1 9 9 N 1.36945 * 119.99713 * 0.27679 * 7 2 1 10 10 C 1.38598 * 120.00108 * 179.97438 * 9 7 2 11 11 N 1.33269 * 120.54223 * 359.72996 * 10 9 7 12 12 C 1.31819 * 120.90066 * 179.64905 * 11 10 9 13 13 Cl 1.73602 * 119.05399 * 180.37459 * 12 11 10 14 14 N 1.31945 * 121.89065 * 0.65025 * 12 11 10 15 15 C 1.33198 * 120.72273 * 359.74902 * 14 12 11 16 16 C 1.38728 * 119.22502 * 359.84635 * 15 14 12 17 17 C 1.50307 * 121.80571 * 180.29367 * 16 15 14 18 18 C 1.52958 * 110.32819 * 339.87021 * 17 16 15 19 19 C 1.53424 * 108.86293 * 50.61633 * 18 17 16 20 20 N 1.38678 * 119.89117 * 179.73905 * 15 14 12 21 21 H 0.97001 * 120.00606 * 179.97438 * 1 2 3 22 22 H 0.96999 * 120.00072 * 0.02562 * 9 7 2 23 23 H 1.08989 * 109.32667 * 100.13507 * 17 16 15 24 24 H 1.08997 * 109.32410 * 219.60917 * 17 16 15 25 25 H 1.09000 * 109.57334 * 170.42819 * 18 17 16 26 26 H 1.09001 * 109.57348 * 290.80140 * 18 17 16 27 27 H 1.09000 * 109.76521 * 56.65176 * 19 18 17 28 28 H 1.08995 * 109.76948 * 177.42762 * 19 18 17 29 29 H 0.96998 * 120.54635 * 346.29576 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6176 0.0000 4 1 3.1083 1.6933 -1.2091 5 1 1.2846 2.7464 -0.0068 6 1 3.0982 1.6992 1.2159 7 6 2.0096 -1.2025 0.0059 8 1 3.0895 -1.2025 0.0104 9 7 1.3247 -2.3884 0.0059 10 6 2.0176 -3.5887 0.0112 11 7 3.3502 -3.6015 0.0109 12 6 4.0163 -4.7389 0.0229 13 17 5.7519 -4.6995 0.0318 14 7 3.4019 -5.9066 0.0229 15 6 2.0717 -5.9756 0.0157 16 6 1.3326 -4.8016 0.0113 17 6 -0.1704 -4.8118 0.0097 18 6 -0.6921 -6.1635 -0.4804 19 6 0.0061 -7.2799 0.3071 20 7 1.4438 -7.2121 0.0103 21 1 -0.4851 -0.8400 -0.0004 22 1 0.3548 -2.3883 0.0015 23 1 -0.5335 -4.6302 1.0212 24 1 -0.5358 -4.0238 -0.6488 25 1 -1.7684 -6.2203 -0.3179 26 1 -0.4751 -6.2753 -1.5427 27 1 -0.1571 -7.1351 1.3750 28 1 -0.3882 -8.2489 0.0013 29 1 1.9453 -8.0188 -0.1862 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181993.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:17 Heat of formation + Delta-G solvation = 41.298323 kcal Electronic energy + Delta-G solvation = -16467.957535 eV Core-core repulsion = 13644.492120 eV Total energy + Delta-G solvation = -2823.465415 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25439 -37.14029 -36.46320 -35.67309 -33.22373 -31.36240 -31.08611 -29.22729 -25.20193 -24.61614 -23.36528 -21.93199 -19.98673 -18.62087 -18.02712 -16.73544 -15.60940 -15.22797 -14.74839 -14.19300 -14.12520 -14.05977 -13.54852 -13.45865 -13.19632 -12.28911 -11.92196 -11.59497 -11.40642 -10.93140 -10.82561 -10.78052 -10.74586 -10.30913 -10.08912 -9.80617 -9.61523 -8.94313 -8.19486 -7.81825 -7.34308 -7.04440 -3.98606 1.93419 2.19173 2.44442 3.25047 3.30244 3.44721 3.59631 4.06950 4.53183 4.57325 4.93761 5.03556 5.16615 5.23897 5.52184 5.59968 5.68340 5.88001 5.89030 6.11539 6.19228 6.37671 6.57220 6.65344 7.28609 7.42830 7.88833 7.93950 8.10050 8.31585 8.86940 9.06467 9.37344 10.36478 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.008258 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.783201 B = 3389.945972 C = 4885.824746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C -0.009 4.009 3 Si 1.093 2.907 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.364 4.364 8 H 0.114 0.886 9 N -0.519 5.519 10 C 0.409 3.591 11 N -0.582 5.582 12 C 0.437 3.563 13 Cl -0.016 7.016 14 N -0.640 5.640 15 C 0.471 3.529 16 C -0.356 4.356 17 C -0.044 4.044 18 C -0.134 4.134 19 C 0.133 3.867 20 N -0.728 5.728 21 H 0.263 0.737 22 H 0.394 0.606 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -10.171 -0.054 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.213 4.213 3 Si 0.918 3.082 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.496 4.496 8 H 0.132 0.868 9 N -0.126 5.126 10 C 0.162 3.838 11 N -0.316 5.316 12 C 0.137 3.863 13 Cl 0.012 6.988 14 N -0.378 5.378 15 C 0.235 3.765 16 C -0.375 4.375 17 C -0.082 4.082 18 C -0.172 4.172 19 C 0.008 3.992 20 N -0.363 5.363 21 H 0.075 0.925 22 H 0.231 0.769 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.116 -8.092 -0.011 8.092 hybrid contribution -0.708 -2.054 -0.069 2.174 sum -0.592 -10.146 -0.080 10.164 Atomic orbital electron populations 1.70968 1.06636 1.29643 1.44478 1.26773 0.96434 1.03110 0.95027 0.83100 0.74534 0.73082 0.77521 1.20555 1.20202 1.20547 1.20936 0.95492 0.83414 1.49716 0.86788 1.40960 1.07384 1.02791 1.61507 1.17388 0.86560 0.85314 0.94563 1.67126 1.07512 1.28858 1.28059 1.21672 0.87379 0.84549 0.92711 1.98343 1.05531 1.98451 1.96511 1.67168 1.08393 1.28343 1.33863 1.17279 0.86638 0.85326 0.87216 1.19242 0.95988 0.91860 1.30413 1.19762 0.91385 0.96751 1.00322 1.21851 0.99489 0.95424 1.00459 1.21494 0.79767 0.98886 0.99064 1.44142 1.08479 1.05404 1.78268 0.92537 0.76886 0.92453 0.92156 0.90827 0.91383 0.92376 0.90303 0.76276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.53 13.69 55.49 0.76 -22.77 15 2 C -0.01 -0.22 5.50 -17.45 -0.10 -0.32 15 3 Si 1.09 22.93 29.92 -169.99 -5.09 17.85 15 4 H -0.28 -5.66 7.11 56.52 0.40 -5.25 15 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 6 H -0.28 -5.66 7.11 56.52 0.40 -5.25 15 7 C -0.36 -9.61 9.72 -15.04 -0.15 -9.75 15 8 H 0.11 3.11 7.11 -52.49 -0.37 2.74 15 9 N -0.52 -12.74 5.33 -11.01 -0.06 -12.80 15 10 C 0.41 9.76 7.44 -154.61 -1.15 8.61 15 11 N -0.58 -14.26 9.21 -10.89 -0.10 -14.36 15 12 C 0.44 9.72 8.18 -92.00 -0.75 8.97 15 13 Cl -0.02 -0.30 29.26 -51.86 -1.52 -1.81 15 14 N -0.64 -13.52 10.45 -11.02 -0.12 -13.64 15 15 C 0.47 9.24 7.50 -154.80 -1.16 8.08 15 16 C -0.36 -7.33 5.78 -104.24 -0.60 -7.93 15 17 C -0.04 -0.73 5.15 -28.10 -0.14 -0.87 15 18 C -0.13 -1.70 6.12 -26.53 -0.16 -1.87 15 19 C 0.13 1.56 7.10 -3.57 -0.03 1.53 15 20 N -0.73 -10.85 5.81 -59.89 -0.35 -11.20 15 21 H 0.26 6.79 6.77 -40.82 -0.28 6.51 15 22 H 0.39 9.11 4.97 -40.82 -0.20 8.91 15 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.06 1.03 7.08 -51.93 -0.37 0.66 15 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 29 H 0.40 5.27 8.96 -40.82 -0.37 4.90 15 LS Contribution 263.08 15.07 3.96 3.96 Total: -1.00 -29.45 263.08 -9.24 -38.68 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -2.49 Total: 9.64 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -4.24 Total: 6.45 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: 0.14 Total: -74.77 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.09 Total: 17.85 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.52 Total: -1.81 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.45 -9.24 -38.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181993.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.982 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds