Wall clock time and date at job start Sun Mar 29 2020 23:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31498 * 1 3 3 Si 1.86794 * 120.00155 * 2 1 4 4 H 1.48502 * 109.47019 * 269.99242 * 3 2 1 5 5 H 1.48494 * 109.47435 * 29.99368 * 3 2 1 6 6 H 1.48502 * 109.47356 * 149.99474 * 3 2 1 7 7 C 1.38900 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00390 * 179.97438 * 7 2 1 9 9 N 1.36830 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.38362 * 119.99911 * 179.97438 * 9 7 2 11 11 N 1.32793 * 119.54693 * 0.29549 * 10 9 7 12 12 C 1.31262 * 121.66030 * 180.29149 * 11 10 9 13 13 C 1.39864 * 120.83679 * 359.69574 * 12 11 10 14 14 C 1.40247 * 119.03207 * 0.02562 * 13 12 11 15 15 C 1.38035 * 118.27054 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 120.35265 * 180.02562 * 15 14 13 17 17 C 1.46980 * 108.26077 * 180.02562 * 13 12 11 18 18 O 1.21517 * 124.88861 * 179.97438 * 17 13 12 19 19 O 1.34401 * 110.21380 * 0.02562 * 17 13 12 20 20 C 1.45369 * 109.00256 * 359.97438 * 19 17 13 21 21 H 0.96998 * 119.99652 * 0.02562 * 1 2 3 22 22 H 0.96993 * 119.99766 * 359.97438 * 9 7 2 23 23 H 1.07997 * 120.86335 * 180.02562 * 14 13 12 24 24 H 1.09004 * 110.06638 * 119.24080 * 20 19 17 25 25 H 1.09001 * 110.07113 * 240.76520 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5465 1.4401 0.7001 7 6 2.0095 -1.2029 0.0005 8 1 3.0894 -1.2030 0.0001 9 7 1.3252 -2.3879 0.0005 10 6 2.0170 -3.5861 0.0005 11 7 3.3449 -3.5757 0.0065 12 6 4.0426 -4.6875 0.0011 13 6 3.4065 -5.9331 -0.0049 14 6 2.0049 -5.9816 -0.0056 15 6 1.3095 -4.7892 0.0002 16 17 -0.4265 -4.7862 0.0004 17 6 4.4402 -6.9781 -0.0094 18 8 4.2203 -8.1732 -0.0146 19 8 5.6634 -6.4213 -0.0059 20 6 5.5248 -4.9742 0.0006 21 1 -0.4849 0.8401 -0.0004 22 1 0.3553 -2.3878 0.0005 23 1 1.4833 -6.9272 -0.0098 24 1 5.9863 -4.5583 0.8963 25 1 5.9876 -4.5501 -0.8905 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182309.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:41 Heat of formation + Delta-G solvation = -45.016076 kcal Electronic energy + Delta-G solvation = -15853.679544 eV Core-core repulsion = 12858.345410 eV Total energy + Delta-G solvation = -2995.334134 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 254.024 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.90945 -38.73593 -36.72162 -35.89294 -35.70273 -32.66324 -31.56095 -29.82325 -27.06447 -25.75259 -22.89599 -22.09660 -20.32697 -18.55941 -17.58823 -16.78893 -16.51529 -16.30196 -15.05928 -14.88962 -14.19693 -13.86006 -13.84125 -13.27597 -13.14020 -12.99510 -12.19630 -12.05679 -11.80723 -11.45344 -11.14784 -10.97649 -10.74359 -10.49129 -10.24759 -10.06838 -9.37025 -8.92311 -8.56987 -7.49944 -7.24941 -4.29935 1.27247 1.87561 2.73928 2.82510 2.87968 2.93495 3.18564 3.53732 3.59686 3.89863 4.20080 4.68907 4.69543 4.83066 5.33882 5.45806 5.50190 5.83786 6.06044 6.40175 6.47344 6.77810 6.87837 7.13273 7.33726 8.01161 8.15572 8.33651 8.55599 9.04005 9.86404 Molecular weight = 254.02amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.007096 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.004827 B = 3945.117830 C = 5082.926258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.026 3.974 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.277 4.277 8 H 0.129 0.871 9 N -0.464 5.464 10 C 0.339 3.661 11 N -0.511 5.511 12 C 0.192 3.808 13 C -0.407 4.407 14 C 0.066 3.934 15 C -0.195 4.195 16 Cl -0.084 7.084 17 C 0.534 3.466 18 O -0.496 6.496 19 O -0.333 6.333 20 C 0.111 3.889 21 H 0.290 0.710 22 H 0.417 0.583 23 H 0.130 0.870 24 H 0.116 0.884 25 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 -0.708 0.007 3.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.185 4.185 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.409 4.409 8 H 0.147 0.853 9 N -0.060 5.060 10 C 0.091 3.909 11 N -0.231 5.231 12 C 0.036 3.964 13 C -0.419 4.419 14 C 0.041 3.959 15 C -0.230 4.230 16 Cl -0.056 7.056 17 C 0.382 3.618 18 O -0.386 6.386 19 O -0.248 6.248 20 C 0.035 3.965 21 H 0.101 0.899 22 H 0.257 0.743 23 H 0.148 0.852 24 H 0.134 0.866 25 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.286 0.053 0.017 3.287 hybrid contribution -0.979 0.135 -0.013 0.988 sum 2.308 0.189 0.004 2.316 Atomic orbital electron populations 1.69654 1.06691 1.30744 1.41008 1.25833 0.95946 1.01514 0.95166 0.85511 0.79451 0.78298 0.79354 1.19307 1.20036 1.18252 1.20471 0.94883 0.81555 1.43983 0.85295 1.41405 1.09547 1.02744 1.52280 1.17388 0.87256 0.84700 1.01532 1.66068 1.04770 1.28589 1.23649 1.21256 0.95613 0.88847 0.90729 1.20233 0.94185 0.95251 1.32262 1.20267 0.91241 0.95962 0.88423 1.20430 0.83571 0.94123 1.24892 1.98290 1.10817 1.98603 1.97849 1.19982 0.81549 0.87583 0.72694 1.90786 1.82903 1.15581 1.49303 1.87167 1.30872 1.20929 1.85869 1.22031 0.91614 0.77491 1.05317 0.89912 0.74342 0.85168 0.86598 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.60 13.05 55.49 0.72 -18.87 15 2 C 0.03 0.56 5.50 -17.45 -0.10 0.47 15 3 Si 0.95 17.08 29.55 -169.99 -5.02 12.06 15 4 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 5 H -0.28 -4.91 7.11 56.52 0.40 -4.51 15 6 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 7 C -0.28 -6.36 9.69 -15.08 -0.15 -6.51 15 8 H 0.13 2.92 7.06 -52.49 -0.37 2.55 15 9 N -0.46 -10.50 5.36 -11.12 -0.06 -10.56 15 10 C 0.34 7.36 7.43 -155.14 -1.15 6.21 15 11 N -0.51 -10.68 9.04 -8.25 -0.07 -10.76 15 12 C 0.19 3.56 7.57 -82.10 -0.62 2.94 15 13 C -0.41 -7.93 6.29 -104.99 -0.66 -8.59 15 14 C 0.07 1.27 10.02 -38.90 -0.39 0.88 15 15 C -0.19 -3.91 6.36 -39.16 -0.25 -4.16 15 16 Cl -0.08 -1.52 27.59 -51.86 -1.43 -2.95 15 17 C 0.53 10.44 8.57 34.27 0.29 10.74 15 18 O -0.50 -10.91 18.04 -18.95 -0.34 -11.25 15 19 O -0.33 -5.62 11.13 -39.33 -0.44 -6.06 15 20 C 0.11 1.57 7.93 36.14 0.29 1.85 15 21 H 0.29 6.19 8.31 -40.82 -0.34 5.85 15 22 H 0.42 9.46 6.51 -40.82 -0.27 9.20 15 23 H 0.13 2.28 8.06 -52.49 -0.42 1.86 15 24 H 0.12 1.33 8.14 -51.93 -0.42 0.91 15 25 H 0.12 1.33 8.14 -51.93 -0.42 0.90 15 LS Contribution 250.66 15.07 3.78 3.78 Total: -1.00 -25.95 250.66 -6.64 -32.59 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -1.04 Total: 8.19 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.73 Total: 3.83 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.59 Total: -40.19 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.78 Total: -17.31 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.02 Total: 12.06 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -1.43 Total: -2.95 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -25.95 -6.64 -32.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182309.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.430 kcal (2) G-P(sol) polarization free energy of solvation -25.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds