Wall clock time and date at job start Sun Mar 29 2020 23:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31498 * 1 3 3 Si 1.86794 * 120.00155 * 2 1 4 4 H 1.48502 * 109.47019 * 269.99242 * 3 2 1 5 5 H 1.48494 * 109.47435 * 29.99368 * 3 2 1 6 6 H 1.48502 * 109.47356 * 149.99474 * 3 2 1 7 7 C 1.38900 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00390 * 179.97438 * 7 2 1 9 9 N 1.36830 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.38362 * 119.99911 * 179.97438 * 9 7 2 11 11 N 1.32793 * 119.54693 * 0.29549 * 10 9 7 12 12 C 1.31262 * 121.66030 * 180.29149 * 11 10 9 13 13 C 1.39864 * 120.83679 * 359.69574 * 12 11 10 14 14 C 1.40247 * 119.03207 * 0.02562 * 13 12 11 15 15 C 1.38035 * 118.27054 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 120.35265 * 180.02562 * 15 14 13 17 17 C 1.46980 * 108.26077 * 180.02562 * 13 12 11 18 18 O 1.21517 * 124.88861 * 179.97438 * 17 13 12 19 19 O 1.34401 * 110.21380 * 0.02562 * 17 13 12 20 20 C 1.45369 * 109.00256 * 359.97438 * 19 17 13 21 21 H 0.96998 * 119.99652 * 0.02562 * 1 2 3 22 22 H 0.96993 * 119.99766 * 359.97438 * 9 7 2 23 23 H 1.07997 * 120.86335 * 180.02562 * 14 13 12 24 24 H 1.09004 * 110.06638 * 119.24080 * 20 19 17 25 25 H 1.09001 * 110.07113 * 240.76520 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5465 1.4401 0.7001 7 6 2.0095 -1.2029 0.0005 8 1 3.0894 -1.2030 0.0001 9 7 1.3252 -2.3879 0.0005 10 6 2.0170 -3.5861 0.0005 11 7 3.3449 -3.5757 0.0065 12 6 4.0426 -4.6875 0.0011 13 6 3.4065 -5.9331 -0.0049 14 6 2.0049 -5.9816 -0.0056 15 6 1.3095 -4.7892 0.0002 16 17 -0.4265 -4.7862 0.0004 17 6 4.4402 -6.9781 -0.0094 18 8 4.2203 -8.1732 -0.0146 19 8 5.6634 -6.4213 -0.0059 20 6 5.5248 -4.9742 0.0006 21 1 -0.4849 0.8401 -0.0004 22 1 0.3553 -2.3878 0.0005 23 1 1.4833 -6.9272 -0.0098 24 1 5.9863 -4.5583 0.8963 25 1 5.9876 -4.5501 -0.8905 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182309.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:41 Heat of formation + Delta-G solvation = -59.388325 kcal Electronic energy + Delta-G solvation = -15854.302772 eV Core-core repulsion = 12858.345410 eV Total energy + Delta-G solvation = -2995.957362 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 254.024 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.40880 -40.31514 -38.30503 -37.41843 -37.27760 -34.26697 -33.13365 -31.36243 -28.45439 -27.36845 -24.49443 -23.63044 -21.84473 -20.17665 -19.13185 -18.32889 -18.07707 -17.68883 -16.66928 -16.40445 -15.63103 -15.47354 -15.40438 -14.77068 -14.52139 -14.51331 -13.71152 -13.54773 -13.34312 -12.96171 -12.77264 -12.44096 -12.12128 -12.01164 -11.67437 -11.62474 -10.96423 -10.47698 -10.14976 -9.11475 -8.84206 -6.01516 -0.28073 0.30776 1.19050 1.39265 1.42350 1.56429 1.65141 2.08854 2.20991 2.39726 2.62193 3.08007 3.15859 3.31603 3.90259 4.04981 4.40325 4.41919 4.63487 4.83787 4.90052 5.14552 5.29915 5.56632 5.80450 6.37975 6.59247 6.72721 6.92654 7.40908 8.29331 Molecular weight = 254.02amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.007096 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.004827 B = 3945.117830 C = 5082.926258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C -0.010 4.010 3 Si 1.012 2.988 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.306 4.306 8 H 0.126 0.874 9 N -0.484 5.484 10 C 0.341 3.659 11 N -0.530 5.530 12 C 0.194 3.806 13 C -0.413 4.413 14 C 0.066 3.934 15 C -0.206 4.206 16 Cl -0.070 7.070 17 C 0.540 3.460 18 O -0.523 6.523 19 O -0.326 6.326 20 C 0.113 3.887 21 H 0.292 0.708 22 H 0.412 0.588 23 H 0.147 0.853 24 H 0.153 0.847 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 -0.859 0.015 5.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.216 4.216 3 Si 0.833 3.167 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.437 4.437 8 H 0.144 0.856 9 N -0.082 5.082 10 C 0.094 3.906 11 N -0.251 5.251 12 C 0.039 3.961 13 C -0.424 4.424 14 C 0.041 3.959 15 C -0.242 4.242 16 Cl -0.042 7.042 17 C 0.388 3.612 18 O -0.415 6.415 19 O -0.241 6.241 20 C 0.039 3.961 21 H 0.103 0.897 22 H 0.251 0.749 23 H 0.164 0.836 24 H 0.171 0.829 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.035 -0.123 0.025 5.036 hybrid contribution -1.410 -0.113 -0.018 1.415 sum 3.625 -0.236 0.007 3.633 Atomic orbital electron populations 1.69719 1.07870 1.31418 1.43139 1.26627 0.96559 1.03993 0.94435 0.84612 0.78308 0.74546 0.79233 1.19085 1.19883 1.17736 1.20571 0.94860 0.82174 1.46101 0.85643 1.41406 1.09272 1.02994 1.54496 1.17808 0.88023 0.85067 0.99703 1.66162 1.04560 1.29495 1.24854 1.21948 0.97885 0.87728 0.88490 1.20551 0.94537 0.96024 1.31337 1.20530 0.91546 0.96387 0.87412 1.20531 0.84601 0.93916 1.25118 1.98291 1.09488 1.98563 1.97820 1.19926 0.82160 0.87101 0.71987 1.90777 1.83512 1.16658 1.50552 1.87173 1.29263 1.22524 1.85152 1.22536 0.88789 0.75862 1.08905 0.89745 0.74914 0.83572 0.82933 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -41.89 13.05 21.66 0.28 -41.61 15 2 C -0.01 -0.47 5.50 84.90 0.47 0.00 15 3 Si 1.01 34.89 29.55 68.60 2.03 36.92 15 4 H -0.27 -8.96 7.11 99.48 0.71 -8.26 15 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 15 6 H -0.25 -8.40 7.11 99.48 0.71 -7.70 15 7 C -0.31 -14.24 9.69 84.07 0.82 -13.42 15 8 H 0.13 5.72 7.06 -2.91 -0.02 5.70 15 9 N -0.48 -22.23 5.36 -189.09 -1.01 -23.24 15 10 C 0.34 14.69 7.43 133.27 0.99 15.68 15 11 N -0.53 -21.43 9.04 -180.01 -1.63 -23.06 15 12 C 0.19 6.70 7.57 43.12 0.33 7.03 15 13 C -0.41 -15.20 6.29 -20.10 -0.13 -15.33 15 14 C 0.07 2.45 10.02 22.71 0.23 2.67 15 15 C -0.21 -8.13 6.36 22.54 0.14 -7.99 15 16 Cl -0.07 -2.51 27.59 -2.72 -0.08 -2.58 15 17 C 0.54 19.79 8.57 70.11 0.60 20.39 15 18 O -0.52 -22.09 18.04 19.47 0.35 -21.74 15 19 O -0.33 -9.85 11.13 -53.44 -0.60 -10.44 15 20 C 0.11 2.71 7.93 71.32 0.57 3.27 15 21 H 0.29 12.75 8.31 -92.71 -0.77 11.98 15 22 H 0.41 19.18 6.51 -92.71 -0.60 18.58 15 23 H 0.15 4.88 8.06 -2.91 -0.02 4.86 15 24 H 0.15 2.71 8.14 -2.39 -0.02 2.69 15 25 H 0.15 2.70 8.14 -2.39 -0.02 2.69 15 Total: -1.00 -55.46 250.66 4.02 -51.44 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.66 Total: 21.99 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 4.01 Total: 12.31 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.36 Total: -87.90 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.24 Total: -32.18 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.08 Total: -2.58 kcal Total: -55.46 4.02 -51.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182309.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.949 kcal (2) G-P(sol) polarization free energy of solvation -55.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds