Wall clock time and date at job start Sun Mar 29 2020 22:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47309 * 2 1 4 4 C 1.53003 * 109.47023 * 119.99607 * 2 1 3 5 5 C 1.53001 * 109.47106 * 185.00362 * 4 2 1 6 6 C 1.50701 * 109.47255 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99733 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00366 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99768 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00224 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47523 * 179.97438 * 10 8 6 12 12 H 1.48499 * 109.47423 * 59.99457 * 10 8 6 13 13 H 1.48504 * 109.47083 * 299.99194 * 10 8 6 14 14 N 1.46899 * 109.47429 * 239.99788 * 2 1 3 15 15 C 1.46891 * 111.00326 * 103.75782 * 14 2 1 16 16 H 1.08997 * 109.47420 * 38.97103 * 15 14 2 17 17 C 1.53003 * 109.46984 * 278.97429 * 15 14 2 18 18 C 1.52996 * 109.47370 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47324 * 59.99975 * 18 17 15 20 20 C 1.53003 * 109.46741 * 299.99952 * 19 18 17 21 21 C 1.53001 * 109.47104 * 60.00292 * 20 19 18 22 22 C 1.53003 * 109.47104 * 180.02562 * 21 20 19 23 23 C 1.52993 * 109.47480 * 59.99452 * 21 20 19 24 24 H 1.09003 * 109.46756 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47325 * 299.93041 * 1 2 3 26 26 H 1.09003 * 109.46763 * 59.93392 * 1 2 3 27 27 H 1.08996 * 109.47028 * 65.00102 * 4 2 1 28 28 H 1.09000 * 109.47278 * 305.00183 * 4 2 1 29 29 H 1.08996 * 109.47389 * 59.99961 * 5 4 2 30 30 H 1.09003 * 109.47349 * 299.99809 * 5 4 2 31 31 H 0.96999 * 120.00115 * 0.02562 * 9 8 6 32 32 H 1.00903 * 110.99964 * 339.80020 * 14 2 1 33 33 H 1.08999 * 109.46929 * 299.99540 * 17 15 14 34 34 H 1.08996 * 109.47323 * 59.99863 * 17 15 14 35 35 H 1.09000 * 109.47134 * 300.00314 * 18 17 15 36 36 H 1.09003 * 109.47586 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.47558 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.47120 * 59.99752 * 19 18 17 39 39 H 1.09002 * 109.47776 * 300.00131 * 20 19 18 40 40 H 1.08996 * 109.47147 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.46667 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47063 * 299.99081 * 22 21 20 43 43 H 1.08999 * 109.47303 * 60.00018 * 22 21 20 44 44 H 1.08999 * 109.47242 * 300.00260 * 23 21 20 45 45 H 1.09007 * 109.47225 * 60.00154 * 23 21 20 46 46 H 1.09003 * 109.47697 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0672 -1.3240 2.5440 7 1 3.3687 -1.8044 3.2132 8 6 5.4184 -1.3602 2.8159 9 7 6.2689 -0.7748 2.0013 10 14 6.0410 -2.2407 4.3411 11 1 7.5210 -2.1360 4.4037 12 1 5.6486 -3.6717 4.2815 13 1 5.4485 -1.6149 5.5505 14 7 2.0197 -0.6925 -1.1994 15 6 2.5027 0.2671 -2.2011 16 1 3.0296 1.0799 -1.7013 17 6 1.3136 0.8331 -2.9800 18 6 1.8166 1.8322 -4.0239 19 6 2.7688 1.1245 -4.9900 20 6 3.9580 0.5586 -4.2111 21 6 3.4549 -0.4406 -3.1673 22 6 4.6440 -1.0060 -2.3879 23 6 2.7149 -1.5815 -3.8684 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5127 0.8906 26 1 -0.3633 0.5149 -0.8894 27 1 1.7516 -1.7714 1.2057 28 1 1.6053 -0.2616 2.1370 29 1 3.8531 0.4371 1.3574 30 1 3.9995 -1.0727 0.4261 31 1 5.9455 -0.3172 1.2095 32 1 1.3068 -1.2921 -1.5872 33 1 0.7868 0.0204 -3.4800 34 1 0.6350 1.3370 -2.2918 35 1 2.3439 2.6450 -3.5244 36 1 0.9696 2.2351 -4.5791 37 1 3.1276 1.8363 -5.7334 38 1 2.2417 0.3116 -5.4895 39 1 4.4852 1.3714 -3.7115 40 1 4.6361 0.0540 -4.8992 41 1 4.2855 -1.7175 -1.6440 42 1 5.3227 -1.5102 -3.0759 43 1 5.1707 -0.1930 -1.8883 44 1 1.8678 -1.1783 -4.4232 45 1 3.3933 -2.0858 -4.5567 46 1 2.3569 -2.2936 -3.1248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:37 Heat of formation + Delta-G solvation = -47.095105 kcal Electronic energy + Delta-G solvation = -20445.493283 eV Core-core repulsion = 17753.951214 eV Total energy + Delta-G solvation = -2691.542069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87860 -36.43059 -33.39844 -33.11225 -31.43348 -29.07909 -28.00348 -27.01001 -25.53663 -24.44866 -22.12369 -21.56239 -20.84040 -19.97347 -18.11065 -16.48275 -15.74239 -15.22789 -14.76637 -14.35942 -13.76361 -13.74019 -13.56438 -13.31506 -13.11762 -12.83052 -12.37089 -12.27324 -12.20331 -11.67607 -11.62624 -11.56269 -11.20363 -11.16412 -11.02891 -10.87657 -10.78860 -10.67372 -10.55017 -10.13923 -10.04078 -9.99807 -9.70364 -9.58148 -9.39078 -8.34372 -8.13633 -7.79115 -6.18335 -3.84751 3.51659 3.54199 3.72524 4.45775 4.67357 4.71701 4.79248 4.98154 5.19165 5.23400 5.36039 5.43508 5.46086 5.49761 5.51714 5.58803 5.60473 5.67138 5.70757 5.89786 5.92497 6.01522 6.07062 6.10124 6.11610 6.17637 6.21527 6.28859 6.30023 6.38526 6.42482 6.44279 6.57891 6.63731 6.77811 6.86702 7.03877 7.26660 7.55320 7.72875 7.87320 7.97070 8.45108 8.67512 9.09363 9.86438 11.22593 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.005757 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.746949 B = 4862.169442 C = 5542.772251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.062 0.938 4 C -0.089 4.089 5 C 0.016 3.984 6 C -0.598 4.598 7 H 0.042 0.958 8 C 0.013 3.987 9 N -0.917 5.917 10 Si 1.065 2.935 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.290 1.290 14 N -0.664 5.664 15 C 0.103 3.897 16 H 0.075 0.925 17 C -0.152 4.152 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.049 4.049 22 C -0.132 4.132 23 C -0.142 4.142 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.042 0.958 29 H -0.007 1.007 30 H 0.028 0.972 31 H 0.269 0.731 32 H 0.332 0.668 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.926 3.023 -13.778 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.026 4.026 3 H 0.080 0.920 4 C -0.128 4.128 5 C -0.021 4.021 6 C -0.637 4.637 7 H 0.060 0.940 8 C -0.190 4.190 9 N -0.554 5.554 10 Si 0.894 3.106 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.217 1.217 14 N -0.293 5.293 15 C -0.008 4.008 16 H 0.093 0.907 17 C -0.192 4.192 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.050 4.050 22 C -0.189 4.189 23 C -0.199 4.199 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.011 0.989 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.918 2.501 -12.639 15.123 hybrid contribution -2.349 0.829 -1.112 2.728 sum -10.267 3.330 -13.750 17.481 Atomic orbital electron populations 1.22526 0.97995 1.01625 1.01260 1.21767 0.91404 0.97410 0.92028 0.92013 1.21499 0.99570 0.98641 0.93060 1.19135 0.90239 0.95355 0.97334 1.22149 0.94449 1.37502 1.09564 0.93952 1.25727 0.93550 0.97051 1.02668 1.70754 1.37207 1.33604 1.13861 0.83612 0.76059 0.75860 0.75076 1.20934 1.21641 1.21724 1.60570 1.41906 1.21025 1.05834 1.21643 0.93940 0.93706 0.91492 0.90659 1.22455 0.99192 0.99184 0.98332 1.21464 0.98688 0.98116 0.97014 1.21576 0.96832 0.99634 0.97670 1.21632 0.97094 0.98629 0.97476 1.20446 0.95736 0.94691 0.94088 1.21753 0.95893 1.01625 0.99634 1.21935 0.99752 0.98166 1.00027 0.92625 0.92458 0.93435 0.93297 0.93915 0.98871 0.95365 0.92053 0.84916 0.91868 0.92265 0.92153 0.92672 0.92578 0.91918 0.92066 0.92118 0.90439 0.94201 0.93044 0.93036 0.93334 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.99 37.16 0.33 -2.05 16 2 C 0.08 1.40 2.45 -67.71 -0.17 1.23 16 3 H 0.06 1.09 7.24 -51.93 -0.38 0.72 16 4 C -0.09 -1.90 4.83 -26.73 -0.13 -2.03 16 5 C 0.02 0.43 4.17 -27.88 -0.12 0.31 16 6 C -0.60 -17.68 9.11 -34.44 -0.31 -18.00 16 7 H 0.04 1.24 7.74 -52.48 -0.41 0.83 16 8 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 9 N -0.92 -28.87 13.65 55.43 0.76 -28.12 16 10 Si 1.06 26.25 29.90 -169.99 -5.08 21.17 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.66 -10.33 4.39 -99.74 -0.44 -10.77 16 15 C 0.10 1.44 1.53 -67.71 -0.10 1.34 16 16 H 0.08 1.23 7.48 -51.93 -0.39 0.84 16 17 C -0.15 -1.76 4.70 -26.73 -0.13 -1.89 16 18 C -0.11 -1.21 5.92 -26.73 -0.16 -1.37 16 19 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 20 C -0.11 -1.32 4.73 -26.73 -0.13 -1.44 16 21 C -0.05 -0.66 0.59 -154.51 -0.09 -0.75 16 22 C -0.13 -2.19 8.31 37.16 0.31 -1.88 16 23 C -0.14 -1.71 7.48 37.15 0.28 -1.43 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.57 6.23 -51.93 -0.32 0.25 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H -0.01 -0.20 8.01 -51.93 -0.42 -0.61 16 30 H 0.03 0.77 6.81 -51.93 -0.35 0.42 16 31 H 0.27 8.45 7.22 -40.82 -0.29 8.15 16 32 H 0.33 4.68 7.05 -39.29 -0.28 4.40 16 33 H 0.06 0.70 6.42 -51.93 -0.33 0.36 16 34 H 0.06 0.70 6.19 -51.93 -0.32 0.38 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.50 6.80 -51.93 -0.35 1.14 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.56 4.81 -51.93 -0.25 0.31 16 45 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 46 H 0.06 0.79 7.10 -51.93 -0.37 0.42 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -30.55 336.43 -9.02 -39.57 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.66 Total: 2.12 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: -0.66 Total: -29.04 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.32 Total: -38.88 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.08 Total: 21.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.55 -9.02 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.528 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds