Wall clock time and date at job start Sun Mar 29 2020 22:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46853 * 2 1 4 4 C 1.52998 * 109.46888 * 120.00312 * 2 1 3 5 5 C 1.53004 * 109.47221 * 296.10181 * 4 2 1 6 6 C 1.50697 * 109.47127 * 185.84713 * 5 4 2 7 7 H 1.08001 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00180 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00271 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99694 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47396 * 90.00077 * 10 8 6 12 12 H 1.48506 * 109.46974 * 210.00003 * 10 8 6 13 13 H 1.48500 * 109.47276 * 329.99927 * 10 8 6 14 14 N 1.46898 * 109.46824 * 240.00160 * 2 1 3 15 15 C 1.46900 * 110.99556 * 187.51128 * 14 2 1 16 16 C 1.46903 * 111.00011 * 63.56076 * 14 2 1 17 17 C 1.52995 * 109.47211 * 196.17198 * 16 14 2 18 18 C 1.52999 * 109.47435 * 183.21377 * 17 16 14 19 19 C 1.52997 * 109.47399 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47436 * 59.99847 * 19 18 17 21 21 C 1.53005 * 109.46741 * 300.00211 * 20 19 18 22 22 C 1.52997 * 109.47085 * 60.00025 * 21 20 19 23 23 H 1.08999 * 109.47267 * 299.99395 * 1 2 3 24 24 H 1.09003 * 109.47344 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47512 * 59.99569 * 1 2 3 26 26 H 1.08998 * 109.47746 * 56.10332 * 4 2 1 27 27 H 1.09005 * 109.47125 * 176.10437 * 4 2 1 28 28 H 1.09005 * 109.46870 * 305.84648 * 5 4 2 29 29 H 1.08994 * 109.46987 * 65.84153 * 5 4 2 30 30 H 0.96996 * 120.00376 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47213 * 65.57290 * 15 14 2 32 32 H 1.09003 * 109.46956 * 185.56440 * 15 14 2 33 33 H 1.08991 * 109.47537 * 305.56760 * 15 14 2 34 34 H 1.08999 * 109.47204 * 316.17985 * 16 14 2 35 35 H 1.09005 * 109.46809 * 76.17591 * 16 14 2 36 36 H 1.08999 * 109.47606 * 303.21766 * 17 16 14 37 37 H 1.09009 * 109.46848 * 300.00222 * 18 17 16 38 38 H 1.08994 * 109.46988 * 59.99783 * 18 17 16 39 39 H 1.09000 * 109.47038 * 299.99566 * 19 18 17 40 40 H 1.08999 * 109.46961 * 179.97438 * 19 18 17 41 41 H 1.08995 * 109.47357 * 180.02562 * 20 19 18 42 42 H 1.09000 * 109.47236 * 59.99841 * 20 19 18 43 43 H 1.09000 * 109.46953 * 299.99804 * 21 20 19 44 44 H 1.09005 * 109.46829 * 179.97438 * 21 20 19 45 45 H 1.09003 * 109.47177 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.47406 * 60.00056 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6115 0.0543 2.4966 6 6 2.2330 -0.5744 3.7170 7 1 2.8695 -1.4407 3.6134 8 6 1.9891 -0.0436 4.9660 9 7 2.5310 -0.5925 6.0311 10 14 0.8876 1.4544 5.1452 11 1 -0.5189 1.0154 5.3303 12 1 1.3181 2.2471 6.3249 13 1 0.9880 2.2917 3.9229 14 7 2.0196 -0.6925 -1.1995 15 6 3.4770 -0.8693 -1.1471 16 6 1.6193 0.0211 -2.4196 17 6 1.7807 -0.9038 -3.6275 18 6 1.4405 -0.1364 -4.9066 19 6 1.6012 -1.0615 -6.1146 20 6 0.6571 -2.2569 -5.9707 21 6 0.9974 -3.0244 -4.6916 22 6 0.8366 -2.0992 -3.4837 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.6207 -1.7268 1.2848 27 1 3.1277 -0.7822 1.2150 28 1 1.9428 1.0893 2.4124 29 1 0.5257 0.0265 2.5865 30 1 2.3591 -0.2193 6.9097 31 1 3.7322 -1.5418 -0.3282 32 1 3.8254 -1.2945 -2.0884 33 1 3.9547 0.0970 -0.9861 34 1 0.5774 0.3297 -2.3347 35 1 2.2495 0.9011 -2.5490 36 1 2.8103 -1.2579 -3.6792 37 1 0.4108 0.2176 -4.8550 38 1 2.1128 0.7154 -5.0089 39 1 2.6307 -1.4158 -6.1664 40 1 1.3584 -0.5148 -7.0257 41 1 0.7720 -2.9162 -6.8310 42 1 -0.3724 -1.9026 -5.9189 43 1 2.0269 -3.3787 -4.7434 44 1 0.3245 -3.8758 -4.5888 45 1 1.0785 -2.6461 -2.5723 46 1 -0.1930 -1.7449 -3.4318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:57 Heat of formation + Delta-G solvation = -36.827581 kcal Electronic energy + Delta-G solvation = -19523.872043 eV Core-core repulsion = 16832.775207 eV Total energy + Delta-G solvation = -2691.096835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.26435 -37.50001 -33.98995 -32.30466 -30.98341 -30.70766 -29.38767 -26.74104 -24.94588 -23.99788 -22.64511 -21.49575 -20.38124 -19.71523 -19.17118 -16.75817 -15.80013 -15.38557 -14.85626 -14.52259 -14.39014 -14.22897 -13.94978 -13.88920 -13.23949 -12.73208 -12.56292 -12.45201 -12.22696 -12.01604 -11.88975 -11.71489 -11.54257 -11.27038 -11.20053 -11.05125 -10.91195 -10.72239 -10.47138 -10.26139 -10.14739 -10.07101 -9.81970 -9.65128 -9.44677 -9.09203 -8.50191 -7.99903 -6.01209 -3.98477 3.32225 3.39435 3.43258 4.11442 4.47759 4.56806 4.68605 4.72843 5.01102 5.17710 5.29266 5.32779 5.34730 5.39813 5.42315 5.46221 5.50177 5.53578 5.61167 5.70850 5.80563 5.84047 5.85799 5.91225 5.93260 6.04336 6.05096 6.11146 6.21168 6.23243 6.25799 6.32278 6.45105 6.49354 6.52702 6.63095 6.67033 6.97115 7.34512 7.38483 7.45212 7.52661 7.84691 8.58507 9.04550 9.61751 11.12496 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.044847 B = 0.003820 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.199517 B = 7328.478474 C = 7458.806171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 H 0.033 0.967 4 C -0.096 4.096 5 C -0.012 4.012 6 C -0.517 4.517 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.534 5.534 15 C 0.022 3.978 16 C 0.053 3.947 17 C -0.080 4.080 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.104 4.104 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.011 0.989 29 H 0.014 0.986 30 H 0.262 0.738 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 -0.089 -23.699 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 H 0.051 0.949 4 C -0.134 4.134 5 C -0.050 4.050 6 C -0.555 4.555 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.545 5.545 10 Si 0.707 3.293 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.191 1.191 14 N -0.258 5.258 15 C -0.126 4.126 16 C -0.075 4.075 17 C -0.099 4.099 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.142 4.142 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.347 -0.534 -23.506 23.749 hybrid contribution -0.124 1.638 0.297 1.669 sum -3.471 1.104 -23.209 23.493 Atomic orbital electron populations 1.21891 0.94913 1.02273 1.00848 1.21816 0.95420 0.95483 0.90202 0.94890 1.21586 1.00114 0.99381 0.92335 1.19601 0.96242 0.95612 0.93558 1.21168 1.29919 1.14685 0.89773 0.91099 1.25034 0.95699 0.96934 0.95904 1.69915 1.44898 1.41254 0.98406 0.86787 0.81206 0.83649 0.77704 1.20274 1.21462 1.19072 1.62041 1.12131 1.49980 1.01667 1.22437 0.87741 1.00305 1.02140 1.22235 1.00908 0.94447 0.89949 1.21137 1.00001 0.95721 0.93010 1.21567 1.01508 0.97807 0.94417 1.21501 0.99745 0.96549 0.97660 1.21542 0.99438 0.96972 0.97738 1.21570 1.01287 0.98089 0.94908 1.21449 0.98861 0.95847 0.98030 0.91787 0.91988 0.93731 0.92162 0.92531 0.97029 0.96825 0.92812 0.90568 0.92123 0.95983 0.90651 0.95441 0.91394 0.92090 0.92406 0.92205 0.92430 0.92570 0.92209 0.92326 0.92355 0.90412 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.84 37.16 0.33 -1.87 16 2 C 0.08 1.31 2.15 -67.71 -0.15 1.17 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.10 -1.95 4.29 -26.73 -0.11 -2.06 16 5 C -0.01 -0.30 3.62 -27.88 -0.10 -0.40 16 6 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 7 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 10 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 14 N -0.53 -7.70 3.96 -234.89 -0.93 -8.63 16 15 C 0.02 0.30 8.69 60.06 0.52 0.83 16 16 C 0.05 0.64 4.26 -3.83 -0.02 0.63 16 17 C -0.08 -0.83 2.20 -90.62 -0.20 -1.03 16 18 C -0.11 -1.03 5.20 -26.73 -0.14 -1.17 16 19 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 20 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 21 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 22 C -0.10 -1.11 5.07 -26.73 -0.14 -1.25 16 23 H 0.06 1.05 6.66 -51.93 -0.35 0.71 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.60 6.19 -51.93 -0.32 0.27 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.16 6.21 -51.93 -0.32 0.83 16 28 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 29 H 0.01 0.32 6.26 -51.93 -0.33 0.00 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.08 1.14 6.47 -51.93 -0.34 0.80 16 32 H 0.06 0.73 6.38 -51.93 -0.33 0.39 16 33 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 34 H 0.08 0.92 5.80 -51.93 -0.30 0.62 16 35 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 36 H 0.07 0.74 6.52 -51.93 -0.34 0.41 16 37 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.97 7.70 -51.93 -0.40 0.57 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -29.90 338.91 -9.52 -39.42 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -8.89 Total: -3.51 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -0.91 Total: -22.18 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.16 Total: -36.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.90 -9.52 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.588 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds