Wall clock time and date at job start Sun Mar 29 2020 22:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46853 * 2 1 4 4 C 1.52998 * 109.46888 * 120.00312 * 2 1 3 5 5 C 1.53004 * 109.47221 * 296.10181 * 4 2 1 6 6 C 1.50697 * 109.47127 * 185.84713 * 5 4 2 7 7 H 1.08001 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00180 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00271 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99694 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47396 * 90.00077 * 10 8 6 12 12 H 1.48506 * 109.46974 * 210.00003 * 10 8 6 13 13 H 1.48500 * 109.47276 * 329.99927 * 10 8 6 14 14 N 1.46898 * 109.46824 * 240.00160 * 2 1 3 15 15 C 1.46900 * 110.99556 * 187.51128 * 14 2 1 16 16 C 1.46903 * 111.00011 * 63.56076 * 14 2 1 17 17 C 1.52995 * 109.47211 * 196.17198 * 16 14 2 18 18 C 1.52999 * 109.47435 * 183.21377 * 17 16 14 19 19 C 1.52997 * 109.47399 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47436 * 59.99847 * 19 18 17 21 21 C 1.53005 * 109.46741 * 300.00211 * 20 19 18 22 22 C 1.52997 * 109.47085 * 60.00025 * 21 20 19 23 23 H 1.08999 * 109.47267 * 299.99395 * 1 2 3 24 24 H 1.09003 * 109.47344 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47512 * 59.99569 * 1 2 3 26 26 H 1.08998 * 109.47746 * 56.10332 * 4 2 1 27 27 H 1.09005 * 109.47125 * 176.10437 * 4 2 1 28 28 H 1.09005 * 109.46870 * 305.84648 * 5 4 2 29 29 H 1.08994 * 109.46987 * 65.84153 * 5 4 2 30 30 H 0.96996 * 120.00376 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47213 * 65.57290 * 15 14 2 32 32 H 1.09003 * 109.46956 * 185.56440 * 15 14 2 33 33 H 1.08991 * 109.47537 * 305.56760 * 15 14 2 34 34 H 1.08999 * 109.47204 * 316.17985 * 16 14 2 35 35 H 1.09005 * 109.46809 * 76.17591 * 16 14 2 36 36 H 1.08999 * 109.47606 * 303.21766 * 17 16 14 37 37 H 1.09009 * 109.46848 * 300.00222 * 18 17 16 38 38 H 1.08994 * 109.46988 * 59.99783 * 18 17 16 39 39 H 1.09000 * 109.47038 * 299.99566 * 19 18 17 40 40 H 1.08999 * 109.46961 * 179.97438 * 19 18 17 41 41 H 1.08995 * 109.47357 * 180.02562 * 20 19 18 42 42 H 1.09000 * 109.47236 * 59.99841 * 20 19 18 43 43 H 1.09000 * 109.46953 * 299.99804 * 21 20 19 44 44 H 1.09005 * 109.46829 * 179.97438 * 21 20 19 45 45 H 1.09003 * 109.47177 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.47406 * 60.00056 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6115 0.0543 2.4966 6 6 2.2330 -0.5744 3.7170 7 1 2.8695 -1.4407 3.6134 8 6 1.9891 -0.0436 4.9660 9 7 2.5310 -0.5925 6.0311 10 14 0.8876 1.4544 5.1452 11 1 -0.5189 1.0154 5.3303 12 1 1.3181 2.2471 6.3249 13 1 0.9880 2.2917 3.9229 14 7 2.0196 -0.6925 -1.1995 15 6 3.4770 -0.8693 -1.1471 16 6 1.6193 0.0211 -2.4196 17 6 1.7807 -0.9038 -3.6275 18 6 1.4405 -0.1364 -4.9066 19 6 1.6012 -1.0615 -6.1146 20 6 0.6571 -2.2569 -5.9707 21 6 0.9974 -3.0244 -4.6916 22 6 0.8366 -2.0992 -3.4837 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.6207 -1.7268 1.2848 27 1 3.1277 -0.7822 1.2150 28 1 1.9428 1.0893 2.4124 29 1 0.5257 0.0265 2.5865 30 1 2.3591 -0.2193 6.9097 31 1 3.7322 -1.5418 -0.3282 32 1 3.8254 -1.2945 -2.0884 33 1 3.9547 0.0970 -0.9861 34 1 0.5774 0.3297 -2.3347 35 1 2.2495 0.9011 -2.5490 36 1 2.8103 -1.2579 -3.6792 37 1 0.4108 0.2176 -4.8550 38 1 2.1128 0.7154 -5.0089 39 1 2.6307 -1.4158 -6.1664 40 1 1.3584 -0.5148 -7.0257 41 1 0.7720 -2.9162 -6.8310 42 1 -0.3724 -1.9026 -5.9189 43 1 2.0269 -3.3787 -4.7434 44 1 0.3245 -3.8758 -4.5888 45 1 1.0785 -2.6461 -2.5723 46 1 -0.1930 -1.7449 -3.4318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:56 Heat of formation + Delta-G solvation = -52.898049 kcal Electronic energy + Delta-G solvation = -19524.568910 eV Core-core repulsion = 16832.775207 eV Total energy + Delta-G solvation = -2691.793703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.23115 -38.57978 -35.69981 -34.07816 -32.07781 -31.49275 -30.91756 -28.08673 -26.42846 -25.19286 -23.43911 -22.95553 -21.51520 -20.61848 -20.50097 -18.91576 -17.01016 -16.35944 -16.17090 -15.96190 -15.64631 -15.38912 -14.92432 -14.80641 -14.68204 -14.37545 -14.06921 -13.74183 -13.20597 -13.08535 -12.95392 -12.93176 -12.80739 -12.63826 -12.43685 -12.20568 -12.06624 -11.91610 -11.77099 -11.54064 -11.46207 -11.43034 -11.16040 -11.09548 -10.83782 -10.75418 -10.74546 -9.16374 -8.29642 -6.33573 1.34987 1.36946 1.49087 2.35950 2.97793 3.05645 3.77879 3.94732 3.97752 4.04094 4.11396 4.25738 4.41604 4.43114 4.50741 4.53947 4.60139 4.66780 4.72562 4.73816 4.76103 4.81510 4.87375 4.88126 4.90714 4.95269 5.01277 5.13198 5.13813 5.16942 5.25907 5.33610 5.35314 5.37504 5.40446 5.50217 5.52113 5.63010 5.64799 5.67253 5.69050 6.18692 6.27704 6.32378 6.74703 7.30853 8.87532 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.044847 B = 0.003820 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.199517 B = 7328.478474 C = 7458.806171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.030 0.970 4 C -0.087 4.087 5 C -0.006 4.006 6 C -0.532 4.532 7 H 0.028 0.972 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.952 3.048 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.247 1.247 14 N -0.537 5.537 15 C 0.024 3.976 16 C 0.054 3.946 17 C -0.074 4.074 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.101 4.101 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.014 0.986 29 H 0.023 0.977 30 H 0.266 0.734 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.019 0.981 34 H 0.079 0.921 35 H 0.030 0.970 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 1.456 -25.991 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.048 0.952 4 C -0.125 4.125 5 C -0.044 4.044 6 C -0.570 4.570 7 H 0.046 0.954 8 C -0.194 4.194 9 N -0.594 5.594 10 Si 0.775 3.225 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.170 1.170 14 N -0.262 5.262 15 C -0.125 4.125 16 C -0.073 4.073 17 C -0.093 4.093 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.139 4.139 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.746 1.002 -25.827 26.278 hybrid contribution 0.393 1.050 1.009 1.509 sum -4.353 2.053 -24.817 25.280 Atomic orbital electron populations 1.21849 0.93646 1.02367 1.01674 1.21610 0.96361 0.94682 0.89527 0.95223 1.21412 0.99507 0.98723 0.92884 1.19518 0.96266 0.95609 0.93010 1.21525 1.29579 1.13777 0.92169 0.95355 1.26052 0.97417 1.00635 0.95323 1.70073 1.46786 1.43375 0.99188 0.85633 0.79145 0.79278 0.78463 1.18889 1.20950 1.17003 1.62020 1.12352 1.50080 1.01706 1.22418 0.87580 0.99879 1.02579 1.22307 1.01012 0.94707 0.89312 1.21085 0.99698 0.95427 0.93054 1.21540 1.01751 0.97895 0.93774 1.21499 0.99712 0.96389 0.97710 1.21532 0.99519 0.97073 0.97367 1.21550 1.01265 0.98003 0.94888 1.21388 0.98747 0.95987 0.97762 0.92633 0.92274 0.91216 0.93271 0.93556 0.96748 0.95865 0.92506 0.92314 0.90086 0.96239 0.90271 0.95218 0.91818 0.91820 0.91945 0.92253 0.91215 0.91581 0.92068 0.92529 0.92190 0.92587 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.84 71.98 0.64 -3.36 16 2 C 0.09 2.79 2.15 44.91 0.10 2.89 16 3 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.09 -3.56 4.29 30.59 0.13 -3.43 16 5 C -0.01 -0.30 3.62 29.85 0.11 -0.19 16 6 C -0.53 -31.70 9.66 25.60 0.25 -31.45 16 7 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 8 C 0.00 0.13 5.47 84.66 0.46 0.59 16 9 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 10 Si 0.95 45.00 27.47 68.60 1.88 46.89 16 11 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 14 N -0.54 -14.90 3.96 -897.06 -3.55 -18.45 16 15 C 0.02 0.64 8.69 127.69 1.11 1.75 16 16 C 0.05 1.21 4.26 86.30 0.37 1.58 16 17 C -0.07 -1.39 2.20 -10.80 -0.02 -1.42 16 18 C -0.11 -1.71 5.20 30.59 0.16 -1.55 16 19 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 20 C -0.12 -1.64 5.92 30.60 0.18 -1.45 16 21 C -0.12 -1.99 5.92 30.59 0.18 -1.81 16 22 C -0.10 -2.00 5.07 30.59 0.16 -1.85 16 23 H 0.05 1.70 6.66 -2.39 -0.02 1.68 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 1.66 6.19 -2.38 -0.01 1.65 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 1.95 6.21 -2.38 -0.01 1.94 16 28 H 0.01 0.68 7.20 -2.38 -0.02 0.66 16 29 H 0.02 1.07 6.26 -2.39 -0.01 1.06 16 30 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.06 1.78 6.47 -2.39 -0.02 1.77 16 32 H 0.08 1.84 6.38 -2.39 -0.02 1.83 16 33 H 0.02 0.53 8.12 -2.39 -0.02 0.51 16 34 H 0.08 1.72 5.80 -2.39 -0.01 1.71 16 35 H 0.03 0.66 8.05 -2.38 -0.02 0.64 16 36 H 0.06 1.27 6.52 -2.39 -0.02 1.25 16 37 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.06 1.35 7.70 -2.39 -0.02 1.33 16 46 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -65.07 338.91 3.47 -61.60 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.84 Total: 11.93 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 3.99 Total: -41.10 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -3.25 Total: -79.31 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Total: -65.07 3.47 -61.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.701 kcal (2) G-P(sol) polarization free energy of solvation -65.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds