Wall clock time and date at job start Sun Mar 29 2020 23:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38297 * 119.95238 * 2 1 4 4 C 1.38265 * 120.14750 * 180.27795 * 3 2 1 5 5 C 1.38225 * 120.05644 * 359.44790 * 4 3 2 6 6 Cl 1.73598 * 120.04472 * 180.25248 * 5 4 3 7 7 C 1.38966 * 119.91050 * 0.27579 * 5 4 3 8 8 N 1.39959 * 120.07743 * 180.02562 * 7 5 4 9 9 C 1.34776 * 120.00430 * 145.28937 * 8 7 5 10 10 O 1.21588 * 119.99388 * 4.47780 * 9 8 7 11 11 N 1.34771 * 120.00134 * 184.48524 * 9 8 7 12 12 C 1.37172 * 119.99969 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99558 * 0.02562 * 12 11 9 14 14 C 1.38877 * 120.00021 * 179.97438 * 12 11 9 15 15 N 1.31477 * 119.99778 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00113 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46956 * 90.00011 * 16 14 12 18 18 H 1.48502 * 109.47217 * 209.99565 * 16 14 12 19 19 H 1.48496 * 109.46884 * 329.99647 * 16 14 12 20 20 C 1.38120 * 119.95028 * 179.72469 * 2 1 3 21 21 H 1.09001 * 109.47002 * 270.26777 * 1 2 3 22 22 H 1.08998 * 109.47254 * 30.26977 * 1 2 3 23 23 H 1.09000 * 109.46963 * 150.27843 * 1 2 3 24 24 H 1.07995 * 119.92702 * 0.02562 * 3 2 1 25 25 H 1.07991 * 119.97370 * 179.72506 * 4 3 2 26 26 H 0.97006 * 119.99657 * 325.29000 * 8 7 5 27 27 H 0.96998 * 120.00422 * 359.97438 * 11 9 8 28 28 H 0.96996 * 119.99573 * 180.02562 * 15 14 12 29 29 H 1.07999 * 120.03540 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1983 0.0000 4 6 3.5801 1.2030 -0.0058 5 6 4.2765 0.0090 -0.0001 6 17 6.0125 0.0153 -0.0008 7 6 3.5852 -1.1964 0.0057 8 7 4.2868 -2.4075 0.0120 9 6 3.7942 -3.4682 0.6818 10 8 2.7023 -3.3987 1.2121 11 7 4.5120 -4.6060 0.7637 12 6 4.0109 -5.6854 1.4459 13 1 3.0409 -5.6236 1.9168 14 6 4.7503 -6.8580 1.5299 15 7 4.2697 -7.8928 2.1833 16 14 6.4276 -6.9650 0.7146 17 1 7.4734 -6.5298 1.6750 18 1 6.6883 -8.3671 0.3008 19 1 6.4545 -6.0831 -0.4798 20 6 2.1966 -1.1967 0.0058 21 1 -0.3633 0.0048 1.0277 22 1 -0.3634 0.8875 -0.5180 23 1 -0.3633 -0.8925 -0.5095 24 1 1.6556 2.1324 0.0004 25 1 4.1165 2.1403 -0.0103 26 1 5.1277 -2.4833 -0.4657 27 1 5.3830 -4.6616 0.3404 28 1 4.7863 -8.7116 2.2423 29 1 1.6563 -2.1319 0.0098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191712940.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:45 Heat of formation + Delta-G solvation = -9.154909 kcal Electronic energy + Delta-G solvation = -16031.526044 eV Core-core repulsion = 13173.580062 eV Total energy + Delta-G solvation = -2857.945983 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09526 -38.38828 -36.40747 -34.75513 -33.89419 -32.10229 -31.73342 -29.33998 -26.72039 -24.95247 -22.68817 -21.24284 -20.03644 -18.75953 -17.57226 -16.65150 -16.02027 -15.38579 -14.90332 -14.32574 -13.88798 -13.72279 -13.57011 -13.34162 -12.92553 -12.77002 -12.36889 -12.17496 -11.67737 -11.38656 -11.28018 -11.08657 -10.80638 -10.65319 -10.09759 -10.01711 -9.60692 -9.07169 -8.44803 -8.28702 -7.78178 -6.31480 -3.85248 1.28444 1.50537 2.25040 3.01545 3.06544 3.13658 3.40363 3.69296 4.09112 4.10070 4.88003 4.96098 5.16262 5.24678 5.30032 5.39909 5.58219 5.70078 5.71687 6.04800 6.09365 6.27508 6.41471 6.64361 6.84085 7.13794 7.26385 7.72080 8.18331 8.65533 8.88234 9.37506 9.75245 10.81316 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.006278 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.507426 B = 4459.247815 C = 5426.939195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.089 4.089 5 C -0.085 4.085 6 Cl -0.078 7.078 7 C 0.206 3.794 8 N -0.695 5.695 9 C 0.657 3.343 10 O -0.592 6.592 11 N -0.598 5.598 12 C -0.296 4.296 13 H 0.122 0.878 14 C 0.042 3.958 15 N -0.883 5.883 16 Si 0.879 3.121 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.271 1.271 20 C -0.114 4.114 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.400 0.600 27 H 0.371 0.629 28 H 0.274 0.726 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 16.546 -7.188 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.065 4.065 3 C -0.162 4.162 4 C -0.108 4.108 5 C -0.115 4.115 6 Cl -0.049 7.049 7 C 0.107 3.893 8 N -0.342 5.342 9 C 0.358 3.642 10 O -0.472 6.472 11 N -0.239 5.239 12 C -0.425 4.425 13 H 0.140 0.860 14 C -0.160 4.160 15 N -0.523 5.523 16 Si 0.705 3.295 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.197 1.197 20 C -0.135 4.135 21 H 0.091 0.909 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.144 0.856 25 H 0.148 0.852 26 H 0.235 0.765 27 H 0.204 0.796 28 H 0.084 0.916 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.324 16.188 -6.584 17.479 hybrid contribution 2.112 -0.328 -0.755 2.266 sum 1.787 15.860 -7.339 17.567 Atomic orbital electron populations 1.20779 0.90846 1.02650 1.02612 1.19915 0.96397 0.92525 0.97686 1.20821 0.93081 0.97710 1.04596 1.20715 0.94104 0.95872 1.00140 1.20713 0.83914 0.94026 1.12874 1.98335 1.10483 1.98799 1.97304 1.17248 0.91159 0.83566 0.97325 1.42754 1.26320 1.09808 1.55311 1.15600 0.85495 0.80300 0.82787 1.90775 1.20738 1.82240 1.53476 1.41366 1.18560 1.11518 1.52488 1.19285 1.05733 0.88229 1.29225 0.86010 1.24928 0.98282 0.95262 0.97562 1.69628 1.38133 1.03319 1.41256 0.86688 0.84534 0.78584 0.79658 1.19615 1.20097 1.19681 1.21357 0.91834 0.99557 1.00705 0.90875 0.91659 0.91235 0.85621 0.85188 0.76545 0.79596 0.91579 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.01 0.36 -0.87 15 2 C -0.06 -0.89 5.88 -104.64 -0.62 -1.50 15 3 C -0.14 -1.71 9.70 -39.55 -0.38 -2.09 15 4 C -0.09 -1.12 9.82 -39.58 -0.39 -1.50 15 5 C -0.09 -1.26 6.34 -39.32 -0.25 -1.51 15 6 Cl -0.08 -1.05 27.96 -51.86 -1.45 -2.50 15 7 C 0.21 3.56 6.31 -83.65 -0.53 3.03 15 8 N -0.69 -12.80 5.06 -14.20 -0.07 -12.87 15 9 C 0.66 15.16 8.36 -86.92 -0.73 14.43 15 10 O -0.59 -15.58 13.33 5.29 0.07 -15.51 15 11 N -0.60 -14.28 5.10 -15.34 -0.08 -14.36 15 12 C -0.30 -8.30 10.16 -14.93 -0.15 -8.45 15 13 H 0.12 3.87 7.39 -52.48 -0.39 3.48 15 14 C 0.04 1.16 5.50 -17.47 -0.10 1.06 15 15 N -0.88 -25.67 13.96 55.49 0.77 -24.89 15 16 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 15 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 15 19 H -0.27 -5.46 6.52 56.52 0.37 -5.10 15 20 C -0.11 -1.95 8.35 -39.40 -0.33 -2.28 15 21 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 22 H 0.06 0.56 8.09 -51.93 -0.42 0.14 15 23 H 0.07 0.76 8.08 -51.93 -0.42 0.34 15 24 H 0.13 1.14 8.06 -52.49 -0.42 0.71 15 25 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 26 H 0.40 6.31 8.09 -40.82 -0.33 5.98 15 27 H 0.37 7.83 5.78 -40.82 -0.24 7.60 15 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 29 H 0.15 3.00 6.20 -52.49 -0.33 2.68 15 LS Contribution 270.48 15.07 4.08 4.08 Total: -1.00 -31.11 270.48 -7.06 -38.16 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -2.55 Total: 12.89 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -3.11 Total: 0.32 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.62 Total: -52.12 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.07 Total: -15.51 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.45 Total: -2.50 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.11 -7.06 -38.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191712940.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.007 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds