Wall clock time and date at job start Sun Mar 29 2020 23:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38297 * 119.95238 * 2 1 4 4 C 1.38265 * 120.14750 * 180.27795 * 3 2 1 5 5 C 1.38225 * 120.05644 * 359.44790 * 4 3 2 6 6 Cl 1.73598 * 120.04472 * 180.25248 * 5 4 3 7 7 C 1.38966 * 119.91050 * 0.27579 * 5 4 3 8 8 N 1.39959 * 120.07743 * 180.02562 * 7 5 4 9 9 C 1.34776 * 120.00430 * 145.28937 * 8 7 5 10 10 O 1.21588 * 119.99388 * 4.47780 * 9 8 7 11 11 N 1.34771 * 120.00134 * 184.48524 * 9 8 7 12 12 C 1.37172 * 119.99969 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99558 * 0.02562 * 12 11 9 14 14 C 1.38877 * 120.00021 * 179.97438 * 12 11 9 15 15 N 1.31477 * 119.99778 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00113 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46956 * 90.00011 * 16 14 12 18 18 H 1.48502 * 109.47217 * 209.99565 * 16 14 12 19 19 H 1.48496 * 109.46884 * 329.99647 * 16 14 12 20 20 C 1.38120 * 119.95028 * 179.72469 * 2 1 3 21 21 H 1.09001 * 109.47002 * 270.26777 * 1 2 3 22 22 H 1.08998 * 109.47254 * 30.26977 * 1 2 3 23 23 H 1.09000 * 109.46963 * 150.27843 * 1 2 3 24 24 H 1.07995 * 119.92702 * 0.02562 * 3 2 1 25 25 H 1.07991 * 119.97370 * 179.72506 * 4 3 2 26 26 H 0.97006 * 119.99657 * 325.29000 * 8 7 5 27 27 H 0.96998 * 120.00422 * 359.97438 * 11 9 8 28 28 H 0.96996 * 119.99573 * 180.02562 * 15 14 12 29 29 H 1.07999 * 120.03540 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1983 0.0000 4 6 3.5801 1.2030 -0.0058 5 6 4.2765 0.0090 -0.0001 6 17 6.0125 0.0153 -0.0008 7 6 3.5852 -1.1964 0.0057 8 7 4.2868 -2.4075 0.0120 9 6 3.7942 -3.4682 0.6818 10 8 2.7023 -3.3987 1.2121 11 7 4.5120 -4.6060 0.7637 12 6 4.0109 -5.6854 1.4459 13 1 3.0409 -5.6236 1.9168 14 6 4.7503 -6.8580 1.5299 15 7 4.2697 -7.8928 2.1833 16 14 6.4276 -6.9650 0.7146 17 1 7.4734 -6.5298 1.6750 18 1 6.6883 -8.3671 0.3008 19 1 6.4545 -6.0831 -0.4798 20 6 2.1966 -1.1967 0.0058 21 1 -0.3633 0.0048 1.0277 22 1 -0.3634 0.8875 -0.5180 23 1 -0.3633 -0.8925 -0.5095 24 1 1.6556 2.1324 0.0004 25 1 4.1165 2.1403 -0.0103 26 1 5.1277 -2.4833 -0.4657 27 1 5.3830 -4.6616 0.3404 28 1 4.7863 -8.7116 2.2423 29 1 1.6563 -2.1319 0.0098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191712940.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:45 Heat of formation + Delta-G solvation = -30.243891 kcal Electronic energy + Delta-G solvation = -16032.440531 eV Core-core repulsion = 13173.580062 eV Total energy + Delta-G solvation = -2858.860470 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59907 -39.84864 -37.50082 -36.45094 -35.70217 -33.81561 -33.13314 -30.67263 -27.76585 -26.87482 -24.00950 -22.45866 -21.76916 -20.68214 -19.17366 -18.04081 -17.38813 -16.74776 -16.69239 -15.97052 -15.38076 -15.06992 -14.83849 -14.73378 -14.49231 -14.17068 -13.80867 -13.34310 -13.08946 -12.68476 -12.46832 -12.44391 -12.18820 -12.04168 -11.90294 -11.66901 -11.30982 -10.90625 -10.34430 -9.60100 -9.07344 -8.41008 -6.03126 0.15174 0.35243 1.12372 1.27979 1.34529 1.40881 1.85267 2.11908 2.21293 2.71024 3.16276 3.50439 3.83802 3.98020 4.26120 4.33166 4.46280 4.76405 4.85751 4.89357 5.13975 5.19343 5.24823 5.39550 5.50124 5.66517 5.76342 5.99646 6.17256 6.72553 6.81897 7.39330 7.87792 8.75976 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.006278 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.507426 B = 4459.247815 C = 5426.939195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 C -0.125 4.125 4 C -0.082 4.082 5 C -0.087 4.087 6 Cl -0.066 7.066 7 C 0.170 3.830 8 N -0.681 5.681 9 C 0.663 3.337 10 O -0.631 6.631 11 N -0.599 5.599 12 C -0.315 4.315 13 H 0.063 0.937 14 C -0.011 4.011 15 N -0.934 5.934 16 Si 0.960 3.040 17 H -0.259 1.259 18 H -0.272 1.272 19 H -0.237 1.237 20 C -0.141 4.141 21 H 0.075 0.925 22 H 0.098 0.902 23 H 0.059 0.941 24 H 0.169 0.831 25 H 0.165 0.835 26 H 0.413 0.587 27 H 0.388 0.612 28 H 0.279 0.721 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 19.576 -8.682 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.101 4.101 5 C -0.116 4.116 6 Cl -0.038 7.038 7 C 0.073 3.927 8 N -0.329 5.329 9 C 0.364 3.636 10 O -0.514 6.514 11 N -0.243 5.243 12 C -0.444 4.444 13 H 0.081 0.919 14 C -0.210 4.210 15 N -0.574 5.574 16 Si 0.781 3.219 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.161 1.161 20 C -0.163 4.163 21 H 0.094 0.906 22 H 0.117 0.883 23 H 0.078 0.922 24 H 0.186 0.814 25 H 0.183 0.817 26 H 0.250 0.750 27 H 0.223 0.777 28 H 0.089 0.911 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.445 19.287 -8.112 20.974 hybrid contribution 1.414 -1.101 -0.265 1.811 sum 2.859 18.186 -8.377 20.226 Atomic orbital electron populations 1.20851 0.89029 1.03858 1.03124 1.20248 0.97872 0.92033 0.96688 1.21308 0.93103 0.98397 1.01571 1.21194 0.94535 0.96211 0.98143 1.20844 0.84691 0.93742 1.12374 1.98338 1.09414 1.98766 1.97239 1.17493 0.91429 0.83728 1.00060 1.42374 1.26734 1.09165 1.54660 1.15807 0.84777 0.80868 0.82125 1.90755 1.22543 1.83147 1.54946 1.41034 1.19351 1.10913 1.53024 1.18846 1.04387 0.90476 1.30685 0.91852 1.25913 1.03365 0.93920 0.97780 1.69798 1.40564 1.04249 1.42839 0.85426 0.77485 0.79349 0.79654 1.18353 1.19710 1.16089 1.21233 0.92232 0.99661 1.03125 0.90628 0.88311 0.92202 0.81374 0.81743 0.74972 0.77662 0.91098 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 10.01 71.24 0.71 -1.55 15 2 C -0.07 -1.76 5.88 -19.88 -0.12 -1.87 15 3 C -0.13 -2.49 9.70 22.29 0.22 -2.27 15 4 C -0.08 -1.73 9.82 22.27 0.22 -1.51 15 5 C -0.09 -2.38 6.34 22.44 0.14 -2.24 15 6 Cl -0.07 -1.62 27.96 -2.72 -0.08 -1.70 15 7 C 0.17 5.84 6.31 38.17 0.24 6.08 15 8 N -0.68 -25.22 5.06 -317.10 -1.60 -26.82 15 9 C 0.66 31.75 8.36 179.06 1.50 33.25 15 10 O -0.63 -35.43 13.33 -3.99 -0.05 -35.48 15 11 N -0.60 -29.22 5.10 -320.72 -1.63 -30.86 15 12 C -0.31 -18.53 10.16 84.01 0.85 -17.68 15 13 H 0.06 4.39 7.39 -2.91 -0.02 4.36 15 14 C -0.01 -0.62 5.50 84.90 0.47 -0.15 15 15 N -0.93 -56.28 13.96 21.65 0.30 -55.98 15 16 Si 0.96 39.49 27.74 68.60 1.90 41.39 15 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 19 H -0.24 -8.37 6.52 99.48 0.65 -7.72 15 20 C -0.14 -4.97 8.35 22.39 0.19 -4.78 15 21 H 0.08 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.10 1.33 8.09 -2.39 -0.02 1.31 15 23 H 0.06 1.31 8.08 -2.39 -0.02 1.30 15 24 H 0.17 1.99 8.06 -2.91 -0.02 1.96 15 25 H 0.17 2.37 8.06 -2.92 -0.02 2.35 15 26 H 0.41 12.68 8.09 -92.70 -0.75 11.93 15 27 H 0.39 15.95 5.78 -92.71 -0.54 15.41 15 28 H 0.28 15.41 8.31 -92.71 -0.77 14.64 15 29 H 0.12 4.94 6.20 -2.91 -0.02 4.92 15 Total: -1.00 -73.15 270.48 3.12 -70.03 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.14 Total: 32.14 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.42 Total: 7.28 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -2.94 Total: -113.66 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.05 Total: -35.48 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.39 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -73.15 3.12 -70.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191712940.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.789 kcal (2) G-P(sol) polarization free energy of solvation -73.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds