Wall clock time and date at job start Mon Mar 30 2020 00:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31475 * 1 3 3 Si 1.86797 * 120.00609 * 2 1 4 4 H 1.48504 * 109.47259 * 270.00535 * 3 2 1 5 5 H 1.48507 * 109.46977 * 29.99878 * 3 2 1 6 6 H 1.48490 * 109.47571 * 149.99900 * 3 2 1 7 7 C 1.38881 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99980 * 179.97438 * 7 2 1 9 9 N 1.37075 * 119.99269 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99323 * 180.02562 * 9 7 2 11 11 S 1.71198 * 120.00090 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99768 * 180.02562 * 10 9 7 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46992 * 179.97438 * 13 12 10 15 15 C 1.38244 * 119.97486 * 269.72684 * 14 13 12 16 16 C 1.38202 * 120.02338 * 179.72838 * 15 14 13 17 17 C 1.38457 * 119.97200 * 0.56577 * 16 15 14 18 18 F 1.35099 * 120.02649 * 179.68648 * 17 16 15 19 19 C 1.38455 * 119.95159 * 359.70550 * 17 16 15 20 20 C 1.38200 * 119.97412 * 0.02562 * 19 17 16 21 21 H 0.97009 * 120.00143 * 0.02562 * 1 2 3 22 22 H 0.96992 * 120.00781 * 359.97438 * 9 7 2 23 23 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 24 24 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 25 25 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 26 26 H 1.07996 * 119.98449 * 359.97438 * 15 14 13 27 27 H 1.07995 * 120.01101 * 180.25281 * 16 15 14 28 28 H 1.08001 * 120.01453 * 179.97438 * 19 17 16 29 29 H 1.08008 * 119.98737 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2489 1.6176 0.0000 4 1 2.4964 2.0464 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5464 1.4400 0.7000 7 6 2.0091 -1.2027 -0.0005 8 1 3.0891 -1.2027 -0.0010 9 7 1.3236 -2.3898 -0.0005 10 6 1.9975 -3.5570 -0.0005 11 16 3.7095 -3.5571 -0.0012 12 7 1.3236 -4.7242 -0.0011 13 6 2.0560 -5.9929 -0.0005 14 6 1.0767 -7.1383 -0.0006 15 6 0.6317 -7.6668 1.1969 16 6 -0.2708 -8.7135 1.1979 17 6 -0.7202 -9.2405 -0.0009 18 9 -1.5975 -10.2679 -0.0011 19 6 -0.2695 -8.7142 -1.1996 20 6 0.6287 -7.6638 -1.1982 21 1 -0.4851 0.8401 -0.0004 22 1 0.3537 -2.3898 0.0002 23 1 0.3536 -4.7241 -0.0011 24 1 2.6821 -6.0507 0.8899 25 1 2.6833 -6.0507 -0.8900 26 1 0.9864 -7.2588 2.1318 27 1 -0.6214 -9.1234 2.1335 28 1 -0.6190 -9.1248 -2.1353 29 1 0.9807 -7.2534 -2.1332 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196502227.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:34 Heat of formation + Delta-G solvation = -16.668387 kcal Electronic energy + Delta-G solvation = -15350.215573 eV Core-core repulsion = 12506.360277 eV Total energy + Delta-G solvation = -2843.855296 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.05758 -39.42896 -37.62126 -35.00147 -32.38319 -31.30302 -30.65734 -26.31126 -24.59058 -23.20090 -22.29354 -21.54463 -18.73682 -17.89665 -17.45540 -16.51512 -15.78338 -15.55177 -15.35432 -14.74576 -14.15829 -14.14390 -13.72695 -13.67425 -13.66500 -13.20265 -12.34878 -11.98379 -11.88101 -11.51893 -11.21683 -11.05714 -10.78321 -10.49813 -9.86893 -9.52690 -9.27607 -8.82025 -8.38446 -6.95489 -6.68534 -6.09757 -4.24957 0.90726 1.07022 2.62185 3.08742 3.13583 3.20866 3.28137 3.55139 3.87398 4.08454 4.22622 4.56854 4.67785 4.75770 4.84120 5.10391 5.14051 5.14727 5.66410 5.79539 5.89343 5.94386 6.05957 6.19510 6.48963 6.71802 7.10816 7.24917 7.29570 8.08013 8.38782 8.88603 9.04620 10.18637 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.039233 B = 0.004181 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.512349 B = 6695.322471 C = 7103.905341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.032 3.968 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.288 4.288 8 H 0.145 0.855 9 N -0.471 5.471 10 C 0.460 3.540 11 S -0.763 6.763 12 N -0.717 5.717 13 C 0.187 3.813 14 C -0.110 4.110 15 C -0.071 4.071 16 C -0.157 4.157 17 C 0.097 3.903 18 F -0.143 7.143 19 C -0.157 4.157 20 C -0.071 4.071 21 H 0.283 0.717 22 H 0.392 0.608 23 H 0.382 0.618 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -12.904 0.012 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.176 4.176 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.423 4.423 8 H 0.162 0.838 9 N -0.074 5.074 10 C 0.098 3.902 11 S -0.638 6.638 12 N -0.356 5.356 13 C 0.063 3.937 14 C -0.111 4.111 15 C -0.090 4.090 16 C -0.176 4.176 17 C 0.077 3.923 18 F -0.121 7.121 19 C -0.176 4.176 20 C -0.090 4.090 21 H 0.093 0.907 22 H 0.228 0.772 23 H 0.217 0.783 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.382 -12.693 0.017 13.428 hybrid contribution -1.902 0.527 -0.012 1.974 sum -6.283 -12.166 0.005 13.693 Atomic orbital electron populations 1.69668 1.06585 1.29945 1.44928 1.25715 0.95771 1.01180 0.94957 0.85534 0.79588 0.78458 0.79128 1.19590 1.20530 1.18181 1.20794 0.95748 0.80032 1.45691 0.83796 1.41060 1.08916 1.03944 1.53494 1.20898 0.93865 0.80648 0.94838 1.92458 0.93605 1.95218 1.82523 1.44087 1.07555 1.03344 1.80601 1.20077 0.91162 0.77936 1.04536 1.20261 0.99224 0.98527 0.93087 1.21063 0.94936 0.94438 0.98535 1.21152 1.00330 0.99011 0.97103 1.17771 0.91843 0.87808 0.94834 1.91491 1.66689 1.56500 1.97466 1.21153 1.00380 0.98959 0.97106 1.21065 0.94964 0.94408 0.98538 0.90708 0.77175 0.78312 0.89974 0.89957 0.84596 0.84730 0.84730 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.59 13.05 55.49 0.72 -20.86 15 2 C 0.03 0.78 5.50 -17.47 -0.10 0.68 15 3 Si 0.95 19.51 29.55 -169.99 -5.02 14.48 15 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 15 7 C -0.29 -7.43 9.51 -14.97 -0.14 -7.57 15 8 H 0.14 3.99 6.22 -52.49 -0.33 3.66 15 9 N -0.47 -11.14 5.29 -12.53 -0.07 -11.21 15 10 C 0.46 10.44 7.94 -86.91 -0.69 9.75 15 11 S -0.76 -20.13 27.15 -107.50 -2.92 -23.05 15 12 N -0.72 -12.54 5.55 -63.21 -0.35 -12.89 15 13 C 0.19 2.86 5.25 -5.19 -0.03 2.83 15 14 C -0.11 -1.33 5.25 -104.62 -0.55 -1.88 15 15 C -0.07 -0.78 9.70 -39.59 -0.38 -1.16 15 16 C -0.16 -1.63 10.03 -39.51 -0.40 -2.03 15 17 C 0.10 1.07 7.30 -39.42 -0.29 0.78 15 18 F -0.14 -1.65 17.27 2.25 0.04 -1.61 15 19 C -0.16 -1.63 10.03 -39.52 -0.40 -2.03 15 20 C -0.07 -0.78 9.70 -39.59 -0.38 -1.16 15 21 H 0.28 6.54 8.31 -40.82 -0.34 6.20 15 22 H 0.39 8.78 7.91 -40.82 -0.32 8.45 15 23 H 0.38 5.84 8.48 -40.82 -0.35 5.50 15 24 H 0.08 1.35 7.93 -51.93 -0.41 0.94 15 25 H 0.08 1.35 7.93 -51.93 -0.41 0.94 15 26 H 0.14 1.36 8.06 -52.49 -0.42 0.94 15 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 15 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 15 29 H 0.14 1.36 8.06 -52.48 -0.42 0.94 15 LS Contribution 278.41 15.07 4.20 4.20 Total: -1.00 -29.61 278.41 -9.40 -39.01 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -2.65 Total: 13.71 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -3.35 Total: -1.78 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.31 Total: -44.96 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: -20.13 SS G_CDS: -2.92 Total: -23.05 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.61 -9.40 -39.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196502227.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.341 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds